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Lag0004976 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0004976
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionMADS-box protein SVP-like
Genome locationchr6:9213162..9215127
RNA-Seq ExpressionLag0004976
SyntenyLag0004976
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR002100 - Transcription factor, MADS-box
IPR033896 - MADS MEF2-like
IPR036879 - Transcription factor, MADS-box superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152597.1 MADS-box protein JOINTLESS [Cucumis sativus]6.8e-3386.36Show/hide
Query:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQV
        MAREKIKI+KIDNLTARQVTFSKRRRGL KKAEELSVLCDAEVAL++FSATGK FE+S+SS+KDVIARY+LHSSNLGKLEYP + LQV
Subjt:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQV

XP_023537829.1 MADS-box protein SVP-like isoform X1 [Cucurbita pepo subsp. pepo]4.0e-3387.78Show/hide
Query:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQVYN
        MAREKIKI+KI NLTARQVTFSKRRRGLFKKAEELSVLCDAEVAL++FSATGKLFEFSSSSVKDVI RY+LHSSNLG+LE P LDLQ+ N
Subjt:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQVYN

XP_023537832.1 MADS-box protein SVP-like isoform X2 [Cucurbita pepo subsp. pepo]4.0e-3387.78Show/hide
Query:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQVYN
        MAREKIKI+KI NLTARQVTFSKRRRGLFKKAEELSVLCDAEVAL++FSATGKLFEFSSSSVKDVI RY+LHSSNLG+LE P LDLQ+ N
Subjt:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQVYN

XP_023537833.1 MADS-box protein SVP-like isoform X3 [Cucurbita pepo subsp. pepo]4.0e-3387.78Show/hide
Query:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQVYN
        MAREKIKI+KI NLTARQVTFSKRRRGLFKKAEELSVLCDAEVAL++FSATGKLFEFSSSSVKDVI RY+LHSSNLG+LE P LDLQ+ N
Subjt:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQVYN

XP_038886182.1 MADS-box protein JOINTLESS-like isoform X1 [Benincasa hispida]6.8e-3386.67Show/hide
Query:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQVYN
        MAREKIKI+KIDNLTARQVTFSKRRRGL KKAEELSVLCDAEVAL+IFSATGK FE+SSSSVK+VIARY+LHS+NLGKLEYP L LQ+ N
Subjt:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQVYN

TrEMBL top hitse value%identityAlignment
A0A1S3BB15 MADS-box protein SVP isoform X14.3e-3387.36Show/hide
Query:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQ
        MAREKIKI+KIDNLTARQVTFSKRRRGL KKAEELSVLCDAEVAL++FSATGK FE+SSSS+KDVIARY+LHSSNLGKLEYP + LQ
Subjt:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQ

A0A1S3BBI3 MADS-box protein JOINTLESS isoform X24.3e-3387.36Show/hide
Query:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQ
        MAREKIKI+KIDNLTARQVTFSKRRRGL KKAEELSVLCDAEVAL++FSATGK FE+SSSS+KDVIARY+LHSSNLGKLEYP + LQ
Subjt:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQ

A0A5A7VD04 MADS-box protein SVP isoform X14.3e-3387.36Show/hide
Query:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQ
        MAREKIKI+KIDNLTARQVTFSKRRRGL KKAEELSVLCDAEVAL++FSATGK FE+SSSS+KDVIARY+LHSSNLGKLEYP + LQ
Subjt:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQ

A0A6J1GHE0 MADS-box protein SVP-like isoform X24.3e-3386.67Show/hide
Query:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQVYN
        MAREKIKI+KI NLTARQVTFSKRRRGLFKKAEELSVLCDAEVAL++FSATGKLFEFSSSSVKDVI RY+LHS+NLG+LE P LDLQ+ N
Subjt:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQVYN

A0A6J1GIF0 MADS-box protein SVP-like isoform X14.3e-3386.67Show/hide
Query:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQVYN
        MAREKIKI+KI NLTARQVTFSKRRRGLFKKAEELSVLCDAEVAL++FSATGKLFEFSSSSVKDVI RY+LHS+NLG+LE P LDLQ+ N
Subjt:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQVYN

SwissProt top hitse value%identityAlignment
O82794 MADS-box protein AGL243.3e-3079.27Show/hide
Query:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYP
        MAREKI+I+KIDN+TARQVTFSKRRRG+FKKA+ELSVLCDA+VALIIFSATGKLFEFSSS ++D++ RYSLH+SN+ KL  P
Subjt:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYP

Q5K4R0 MADS-box transcription factor 476.4e-2669.41Show/hide
Query:  REKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQ
        RE+I IR+IDNL ARQVTFSKRRRGLFKKAEELS+LCDAEV L++FSATGKLF+F+S+S++ +I RY+ HS  L + E   LDLQ
Subjt:  REKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQ

Q9FUY6 MADS-box protein JOINTLESS5.6e-3076.14Show/hide
Query:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQV
        MAREKI+I+KIDN TARQVTFSKRRRGLFKKAEELSVLCDA+VALIIFS+TGKLF++SSSS+K ++ R  LHS NL KL+ P L+LQ+
Subjt:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQV

Q9FVC1 MADS-box protein SVP1.5e-3078.41Show/hide
Query:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQV
        MAREKI+IRKIDN TARQVTFSKRRRGLFKKAEELSVLCDA+VALIIFS+TGKLFEF SSS+K+V+ R++L S NL KL+ P L+LQ+
Subjt:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQV

Q9XJ66 MADS-box transcription factor 222.2e-2667.05Show/hide
Query:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQV
        MARE+ +I++I++  ARQVTFSKRRRGLFKKAEELSVLCDA+VALI+FS+TGKL  F+SSS+ ++I +Y+ HS+NLGK E P LDL +
Subjt:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQV

Arabidopsis top hitse value%identityAlignment
AT2G22540.1 K-box region and MADS-box transcription factor family protein1.1e-3178.41Show/hide
Query:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQV
        MAREKI+IRKIDN TARQVTFSKRRRGLFKKAEELSVLCDA+VALIIFS+TGKLFEF SSS+K+V+ R++L S NL KL+ P L+LQ+
Subjt:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQV

AT2G22540.2 K-box region and MADS-box transcription factor family protein1.2e-2772.73Show/hide
Query:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQV
        MAREKI+IRKIDN TARQVTFSKRRRGLFKKAEELSVLCDA+VALIIFS+TGKLF+     +K+V+ R++L S NL KL+ P L+LQ+
Subjt:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQV

AT3G57230.1 AGAMOUS-like 168.4e-2156.18Show/hide
Query:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQVY
        M R KI I++I+N T+RQVTFSKRR GL KKA+EL++LCDAEV +IIFS+TG+L++FSSSS+K VI RYS           P  ++Q +
Subjt:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQVY

AT4G24540.1 AGAMOUS-like 242.3e-3179.27Show/hide
Query:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYP
        MAREKI+I+KIDN+TARQVTFSKRRRG+FKKA+ELSVLCDA+VALIIFSATGKLFEFSSS ++D++ RYSLH+SN+ KL  P
Subjt:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYP

AT5G13790.1 AGAMOUS-like 158.4e-2156.18Show/hide
Query:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLH-SSNLGKLEYPLLDLQV
        M R KI+I++I+N  +RQVTFSKRR GL KKA ELSVLCDAEVA+I+FS +GKLFE+SS+ +K  ++RY  H SS+  K E    ++ +
Subjt:  MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLH-SSNLGKLEYPLLDLQV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAGAGAGAAGATCAAGATAAGGAAGATCGATAACTTGACGGCGAGGCAGGTGACGTTCTCGAAGCGACGGCGAGGGCTCTTCAAGAAGGCGGAGGAGCTGTCAGT
GCTCTGCGATGCTGAGGTGGCACTGATCATCTTCTCCGCCACCGGAAAGCTCTTCGAGTTTTCCAGTTCGAGCGTCAAGGATGTTATAGCGAGGTACAGTTTGCACTCCA
GTAACCTTGGAAAATTGGAATATCCATTGCTCGACTTGCAGGTCTATAATCTTTTCGACGCTTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGAGAGAGAAGATCAAGATAAGGAAGATCGATAACTTGACGGCGAGGCAGGTGACGTTCTCGAAGCGACGGCGAGGGCTCTTCAAGAAGGCGGAGGAGCTGTCAGT
GCTCTGCGATGCTGAGGTGGCACTGATCATCTTCTCCGCCACCGGAAAGCTCTTCGAGTTTTCCAGTTCGAGCGTCAAGGATGTTATAGCGAGGTACAGTTTGCACTCCA
GTAACCTTGGAAAATTGGAATATCCATTGCTCGACTTGCAGGTCTATAATCTTTTCGACGCTTTCTAA
Protein sequenceShow/hide protein sequence
MAREKIKIRKIDNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALIIFSATGKLFEFSSSSVKDVIARYSLHSSNLGKLEYPLLDLQVYNLFDAF