; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0004986 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0004986
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr6:9280792..9286413
RNA-Seq ExpressionLag0004986
SyntenyLag0004986
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_030924801.1 uncharacterized protein LOC115951796 [Quercus lobata]1.0e-1940.79Show/hide
Query:  KSEADQRPKSHRAVRNQKARFDRYTPLTASSEQVLAPIQDTNLLKRPEKLRSDPDKRNKNKYCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDR
        K   + R +          R   YTPL A   QV   I+D   LK PEK++ DP+KRNKNKYC FH DHGH T EC  L+ +IE LIR+G  K FVG DR
Subjt:  KSEADQRPKSHRAVRNQKARFDRYTPLTASSEQVLAPIQDTNLLKRPEKLRSDPDKRNKNKYCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDR

Query:  SKRPLPADQGKGGANPLFEIQTISGGSSEEGGAAHGEQKMSRECYFMALGNI
        +   L     +    PL EI+ I GG+        G+   S++ Y  A+ N+
Subjt:  SKRPLPADQGKGGANPLFEIQTISGGSSEEGGAAHGEQKMSRECYFMALGNI

XP_030950020.1 uncharacterized protein LOC115973918 [Quercus lobata]1.2e-2041.45Show/hide
Query:  KSEADQRPKSHRAVRNQKARFDRYTPLTASSEQVLAPIQDTNLLKRPEKLRSDPDKRNKNKYCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDR
        K   D+R            R  +YTPL A  EQVL  I+D   LK PEKL+ DP+KRN+NKYC FH DHGH T EC  L+ +IE LIR+G  +GF+G D+
Subjt:  KSEADQRPKSHRAVRNQKARFDRYTPLTASSEQVLAPIQDTNLLKRPEKLRSDPDKRNKNKYCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDR

Query:  SKRPLPADQGKGGANPLFEIQTISGGSSEEGGAAHGEQKMSRECYFMALGNI
                       PL EI+ I GGSS       G    S++ Y   + N+
Subjt:  SKRPLPADQGKGGANPLFEIQTISGGSSEEGGAAHGEQKMSRECYFMALGNI

XP_030955724.1 uncharacterized protein LOC115977839 [Quercus lobata]9.2e-2141.88Show/hide
Query:  SEADQRPKSHRAVRNQK---------ARFDRYTPLTASSEQVLAPIQDTNLLKRPEKLRSDPDKRNKNKYCMFHGDHGHATRECIQLRDEIEALIREGYP
        SE   RPK  R    ++          R   YTPL A   QVL  I+D   LK PEK++ DP+KRNKNKYC FH DHGH T EC  L+ +IE LIR+G  
Subjt:  SEADQRPKSHRAVRNQK---------ARFDRYTPLTASSEQVLAPIQDTNLLKRPEKLRSDPDKRNKNKYCMFHGDHGHATRECIQLRDEIEALIREGYP

Query:  KGFVGNDRSKRPLPADQGKGGANPLFEIQTISGGSSEEGGAAHGEQKMSRECYFMALGNI
        K FVG DR+   L     +    PL EI+ I GG+        G+   S++ Y  A+ N+
Subjt:  KGFVGNDRSKRPLPADQGKGGANPLFEIQTISGGSSEEGGAAHGEQKMSRECYFMALGNI

XP_030970531.1 uncharacterized protein LOC115990904 [Quercus lobata]1.3e-1937.24Show/hide
Query:  HSSANGRGRAEAQSQKKARRSSPQKTASGTYTGNNARTKSEARAKSEADQRPKSHRAVRNQKARFDRYTPLTASSEQVLAPIQDTNLLKRPEKLRSDPDK
        HS+ N     +A   KK +RS    T    +     R K     +    +  K   +VRNQ     +YTPL A  EQVL  I+D   LK P+K++ DP+K
Subjt:  HSSANGRGRAEAQSQKKARRSSPQKTASGTYTGNNARTKSEARAKSEADQRPKSHRAVRNQKARFDRYTPLTASSEQVLAPIQDTNLLKRPEKLRSDPDK

Query:  RNKNKYCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDRSKRPLPADQGKGGANPLFEIQTISGGSSEEGGAAHGEQKMSRECYFMALGNI
        RN+NKYC FH DHGH T EC  L+ +IE LIR+G  +GF+G D+          +    PL EI+ I GGSS       G+   S++ Y   + +I
Subjt:  RNKNKYCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDRSKRPLPADQGKGGANPLFEIQTISGGSSEEGGAAHGEQKMSRECYFMALGNI

XP_030970555.1 uncharacterized protein LOC115990928 [Quercus lobata]3.0e-1939.18Show/hide
Query:  SEADQRPKSHRAVRNQK---------ARFDRYTPLTASSEQVLAPIQDTNLLKRPEKLRSDPDKRNKNKYCMFHGDHGHATRECIQLRDEIEALIREGYP
        SE   RPK  R    ++          R   YTPL A  +QVL  I+D   LK PEK++  P+KRNKNKYC FH DHGH T EC  L+ +IE LIR+G  
Subjt:  SEADQRPKSHRAVRNQK---------ARFDRYTPLTASSEQVLAPIQDTNLLKRPEKLRSDPDKRNKNKYCMFHGDHGHATRECIQLRDEIEALIREGYP

Query:  KGFVGNDRSKRPLPADQGKGGANPLFEIQTISGGSSEEGGAAHGEQKMSRECYFMALGNI--DRKTQATSS
        + FVG D     L     +    PL EI+ I GG+S       G+   S++ Y   + N+   R++  T S
Subjt:  KGFVGNDRSKRPLPADQGKGGANPLFEIQTISGGSSEEGGAAHGEQKMSRECYFMALGNI--DRKTQATSS

TrEMBL top hitse value%identityAlignment
A0A2N9FE79 Ribonuclease H3.9e-1740.58Show/hide
Query:  RFDRYTPLTASSEQVLAPIQDTNLLKRPEKLRSDPDKRNKNKYCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDRSKRPL--PADQGKGGAN--
        +F  +TPL    +++L  IQD   L+ P K+RSDP+ R KN YC FH DHGH T EC+ L+++IE LIR+G  + +V    + RP   PA + +   N  
Subjt:  RFDRYTPLTASSEQVLAPIQDTNLLKRPEKLRSDPDKRNKNKYCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDRSKRPL--PADQGKGGAN--

Query:  -PLFEIQTISGGSSEEGGAAHGEQKMSRECYFMALGNI
         P+ EI+TI GG      A+ G  + SR+ Y   + NI
Subjt:  -PLFEIQTISGGSSEEGGAAHGEQKMSRECYFMALGNI

A0A2N9HH57 Ribonuclease H3.9e-1737.75Show/hide
Query:  RPKSHRAVRNQKARFDRYTPLTASSEQVLAPIQDTNLLKRPEKLRSDPDKRNKNKYCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDRSKRPL-
        +P++ +       +F  +TPL    +++L  IQD   L+ P K+RSDP+ R KN YC FH DHGH T EC+ L+++IE LIR+G  + +V    + RP  
Subjt:  RPKSHRAVRNQKARFDRYTPLTASSEQVLAPIQDTNLLKRPEKLRSDPDKRNKNKYCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDRSKRPL-

Query:  -PADQGKGGAN---PLFEIQTISGGSSEEGGAAHGEQKMSRECYFMALGNI
         PA + +   N   P+ EI+TI GG      A+ G  + SR+ Y   + NI
Subjt:  -PADQGKGGAN---PLFEIQTISGGSSEEGGAAHGEQKMSRECYFMALGNI

A0A6J1DZ52 uncharacterized protein LOC1110256121.6e-1841.38Show/hide
Query:  GNNARTKSEARAKSEADQRPKSHRAVRNQK---ARFDRYTPLTASSEQVLAPIQDTNLLKRPEKLRSDPDKRNKNKYCMFHGDHGHATRECIQLRDEIEA
        G  A  K E   +     + +    V  QK    +F++YTP T   EQVL  I+D  LLK PE +++ P+KR+K +YC+FH DHGHAT +C  L++E+E 
Subjt:  GNNARTKSEARAKSEADQRPKSHRAVRNQK---ARFDRYTPLTASSEQVLAPIQDTNLLKRPEKLRSDPDKRNKNKYCMFHGDHGHATRECIQLRDEIEA

Query:  LIREGYPKGFVGNDRSKRPLPADQGKGGANPLFEIQTISGGSSEE
        LIR+GY K +V +D    P   +  K   +P  EI+TI GGS+E+
Subjt:  LIREGYPKGFVGNDRSKRPLPADQGKGGANPLFEIQTISGGSSEE

A0A6J1E1B3 uncharacterized protein LOC1110255211.0e-1743.08Show/hide
Query:  NNARTKSEARAKSEADQRPKSHRAVRNQKARFDRYTPLTASSEQVLAPIQDT---NLLKRPEKLRSDPDKRNKNKYCMFHGDHGHATRECIQLRDEIEAL
        + ++ K  + + S+AD R     + RN+   ++RYTP T  S ++L  I++T    LLKRP+KLR DP+KRNK+KYC FH DHGH T  C +L+ +IE L
Subjt:  NNARTKSEARAKSEADQRPKSHRAVRNQKARFDRYTPLTASSEQVLAPIQDT---NLLKRPEKLRSDPDKRNKNKYCMFHGDHGHATRECIQLRDEIEAL

Query:  IREGYPKGFVGNDRSKRPLPADQGKGGANP
        I+ GY K FVG  RS      ++ K    P
Subjt:  IREGYPKGFVGNDRSKRPLPADQGKGGANP

A0A7N2N9G0 Reverse transcriptase8.7e-1735.45Show/hide
Query:  AQSQKKARRSSPQKTASGTYTGNNARTKSEARAKSEADQRPKSHRAVRNQKARFDRYTPLTASSEQVLAPIQDTNLLKRPEKLRSDPDKRNKNKYCMFHG
        A+    AR   P+K             + + R K+    R +  R  R    RF  +TPLTA  +QVL  I+D   L  P KL+SDP+KR+++KYC FH 
Subjt:  AQSQKKARRSSPQKTASGTYTGNNARTKSEARAKSEADQRPKSHRAVRNQKARFDRYTPLTASSEQVLAPIQDTNLLKRPEKLRSDPDKRNKNKYCMFHG

Query:  DHGHATRECIQLRDEIEALIREGYPKGFVGNDRSKRPL----PADQGKGGANPLFEIQTISGGSSEEGGAAHGEQKMSRECYFMALGNI
        DHGH T +C  L+ +IEALIR+G  + FV  +R+  P     P    +    P+ +I+ I GG+     AA G  K +R+ Y   + N+
Subjt:  DHGHATRECIQLRDEIEALIREGYPKGFVGNDRSKRPL----PADQGKGGANPLFEIQTISGGSSEEGGAAHGEQKMSRECYFMALGNI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAAGTCAGCAAGCATAACGGTAGGGCGTGGAAAAGTCAAACCAGGCGAAACCGGGGTATCCAGAGGCGGTGGGGACCAGACGGGACCAAACGAGCTCGGCCTCGG
CCCATGGCCGAGGCCGAGCATGGGGTCGGGTCAAAAACCCGACCCCTTCGACCTTGGCCCGTCCCGCTTACCGGCTCCGCCTCCTTGGCCCGGTTTCCAGCCCGATTTCT
CCCCGATTGTCCTCGTCAGCTCCTCCGCCGCACCCGCCGCCGCACCCACCGCCGCTCAGCGGATGTTGATGGCTCCGGCAAAGCCTTTTTCATTTGTGCTTATGTGTCGA
CAGTCGACAGACAATGGCCGTCCAAAGTCAACCGCCCAAGGGAAGAAGAAAACGTACGAGGAGCTGACGGGACAACCGGGAGGAGATAGAACCAAGAAAGGGACCCAGAG
GGAGACCATACCGACGGGTAGGGCCAACGTGGCCCGACCCGTACGGTCGGCCTCGGCCTTGGGCCGAGCCCGACCACTCGGCCCGTTTGCGCGGGCCGAGTCCGTTTGCC
TCCGCTCGGCCCCTACCGCTTCCAGCTGCCTCGGTCCAGCCTGCTTCGTCCCAGAACGCCTCCAAACCCTAGGAGTCCGAGCAGCTTCTACAAATTCACTGTTGGTGTCA
CGTGAAGGCCAGGTGAATCCCCTGTCCGGATTTTGGCATCAACAGTTGGCGCCGTCTATGGGGAAGAATGCTTGCCAGATCGGATCGCACATCGGTGGTGGTCTGCACGA
TGGATCGGGTTCAGAAACCAGAGGGAAGCCTCGGGCCGACCTTGACTTCGGAGACTGTTGTAAGGATCCGTGTGCCCACGATGCTACGGACCTAACCCAAGAGGACAACC
AGCAGAAGGAGAGAGAGAACCGGGAAGCTGTTATATCCGACCAGCATCAAGAAGACAAAGGAAAAGGATGTCGGGTAGAAGATGTAGGCCAGATCCGACATGAGCACTCC
TCGGCCAATGGCCGAGGCCGAGCAGAAGCCCAATCGCAAAAAAAAGCCCGCAGAAGTTCGCCGCAAAAGACAGCGTCGGGTACGTACACAGGAAATAATGCCAGGACAAA
GTCAGAGGCTCGGGCAAAGTCCGAGGCCGACCAGAGGCCAAAGAGCCACAGGGCTGTGCGGAACCAAAAAGCCAGATTCGACAGGTATACACCACTAACAGCTTCGTCTG
AACAGGTCTTGGCCCCAATACAGGACACAAATCTGTTGAAACGCCCAGAAAAGTTGAGGTCAGACCCCGATAAGAGGAACAAAAACAAATACTGCATGTTCCACGGAGAC
CACGGTCATGCAACCCGGGAATGCATACAGTTGAGGGACGAGATAGAAGCCCTAATCCGAGAAGGTTACCCCAAGGGGTTCGTGGGGAACGACAGAAGCAAGAGGCCACT
GCCGGCAGATCAAGGTAAGGGCGGTGCCAACCCGCTATTCGAGATACAAACAATTTCAGGAGGATCATCCGAAGAAGGTGGAGCAGCGCATGGCGAGCAAAAAATGTCGA
GGGAATGTTACTTTATGGCGCTCGGGAACATCGACAGGAAGACTCAAGCAACGTCGTCCTCGGGAGATGGCCGAGGCCGAGCCTTTGAGGGGTCAAGCTATCTCCTTCCA
ATGAAACATTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTAAGTCAGCAAGCATAACGGTAGGGCGTGGAAAAGTCAAACCAGGCGAAACCGGGGTATCCAGAGGCGGTGGGGACCAGACGGGACCAAACGAGCTCGGCCTCGG
CCCATGGCCGAGGCCGAGCATGGGGTCGGGTCAAAAACCCGACCCCTTCGACCTTGGCCCGTCCCGCTTACCGGCTCCGCCTCCTTGGCCCGGTTTCCAGCCCGATTTCT
CCCCGATTGTCCTCGTCAGCTCCTCCGCCGCACCCGCCGCCGCACCCACCGCCGCTCAGCGGATGTTGATGGCTCCGGCAAAGCCTTTTTCATTTGTGCTTATGTGTCGA
CAGTCGACAGACAATGGCCGTCCAAAGTCAACCGCCCAAGGGAAGAAGAAAACGTACGAGGAGCTGACGGGACAACCGGGAGGAGATAGAACCAAGAAAGGGACCCAGAG
GGAGACCATACCGACGGGTAGGGCCAACGTGGCCCGACCCGTACGGTCGGCCTCGGCCTTGGGCCGAGCCCGACCACTCGGCCCGTTTGCGCGGGCCGAGTCCGTTTGCC
TCCGCTCGGCCCCTACCGCTTCCAGCTGCCTCGGTCCAGCCTGCTTCGTCCCAGAACGCCTCCAAACCCTAGGAGTCCGAGCAGCTTCTACAAATTCACTGTTGGTGTCA
CGTGAAGGCCAGGTGAATCCCCTGTCCGGATTTTGGCATCAACAGTTGGCGCCGTCTATGGGGAAGAATGCTTGCCAGATCGGATCGCACATCGGTGGTGGTCTGCACGA
TGGATCGGGTTCAGAAACCAGAGGGAAGCCTCGGGCCGACCTTGACTTCGGAGACTGTTGTAAGGATCCGTGTGCCCACGATGCTACGGACCTAACCCAAGAGGACAACC
AGCAGAAGGAGAGAGAGAACCGGGAAGCTGTTATATCCGACCAGCATCAAGAAGACAAAGGAAAAGGATGTCGGGTAGAAGATGTAGGCCAGATCCGACATGAGCACTCC
TCGGCCAATGGCCGAGGCCGAGCAGAAGCCCAATCGCAAAAAAAAGCCCGCAGAAGTTCGCCGCAAAAGACAGCGTCGGGTACGTACACAGGAAATAATGCCAGGACAAA
GTCAGAGGCTCGGGCAAAGTCCGAGGCCGACCAGAGGCCAAAGAGCCACAGGGCTGTGCGGAACCAAAAAGCCAGATTCGACAGGTATACACCACTAACAGCTTCGTCTG
AACAGGTCTTGGCCCCAATACAGGACACAAATCTGTTGAAACGCCCAGAAAAGTTGAGGTCAGACCCCGATAAGAGGAACAAAAACAAATACTGCATGTTCCACGGAGAC
CACGGTCATGCAACCCGGGAATGCATACAGTTGAGGGACGAGATAGAAGCCCTAATCCGAGAAGGTTACCCCAAGGGGTTCGTGGGGAACGACAGAAGCAAGAGGCCACT
GCCGGCAGATCAAGGTAAGGGCGGTGCCAACCCGCTATTCGAGATACAAACAATTTCAGGAGGATCATCCGAAGAAGGTGGAGCAGCGCATGGCGAGCAAAAAATGTCGA
GGGAATGTTACTTTATGGCGCTCGGGAACATCGACAGGAAGACTCAAGCAACGTCGTCCTCGGGAGATGGCCGAGGCCGAGCCTTTGAGGGGTCAAGCTATCTCCTTCCA
ATGAAACATTGA
Protein sequenceShow/hide protein sequence
MLKSASITVGRGKVKPGETGVSRGGGDQTGPNELGLGPWPRPSMGSGQKPDPFDLGPSRLPAPPPWPGFQPDFSPIVLVSSSAAPAAAPTAAQRMLMAPAKPFSFVLMCR
QSTDNGRPKSTAQGKKKTYEELTGQPGGDRTKKGTQRETIPTGRANVARPVRSASALGRARPLGPFARAESVCLRSAPTASSCLGPACFVPERLQTLGVRAASTNSLLVS
REGQVNPLSGFWHQQLAPSMGKNACQIGSHIGGGLHDGSGSETRGKPRADLDFGDCCKDPCAHDATDLTQEDNQQKERENREAVISDQHQEDKGKGCRVEDVGQIRHEHS
SANGRGRAEAQSQKKARRSSPQKTASGTYTGNNARTKSEARAKSEADQRPKSHRAVRNQKARFDRYTPLTASSEQVLAPIQDTNLLKRPEKLRSDPDKRNKNKYCMFHGD
HGHATRECIQLRDEIEALIREGYPKGFVGNDRSKRPLPADQGKGGANPLFEIQTISGGSSEEGGAAHGEQKMSRECYFMALGNIDRKTQATSSSGDGRGRAFEGSSYLLP
MKH