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Lag0005006 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005006
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr6:9452488..9455705
RNA-Seq ExpressionLag0005006
SyntenyLag0005006
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023902012.1 uncharacterized protein LOC112013864 [Quercus suber]3.7e-1240.37Show/hide
Query:  DPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRLLLADQGKGGANPLFEIQTILGGSSEEGGATHGEQKMSRECYVMALGNI
        DP++RN+NK C FH DHGH T EC  L+ +IE LIR+G  K F+G D     L A   +    PL EI+ ILGGSS       G+   S++ Y+ A+ ++
Subjt:  DPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRLLLADQGKGGANPLFEIQTILGGSSEEGGATHGEQKMSRECYVMALGNI

Query:  DRKAQATSA
            ++ +A
Subjt:  DRKAQATSA

XP_023921045.1 uncharacterized protein LOC112032513 [Quercus suber]1.3e-1241.28Show/hide
Query:  DPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRLLLADQGKGGANPLFEIQTILGGSSEEGGATHGEQKMSRECYVMALGNI
        DP++RN+NK C FH DHGH T EC  L+ +IE LIR+G  K F+G D     L A   +    PL EI+ ILGGSS       G+   S++ Y+ A+ ++
Subjt:  DPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRLLLADQGKGGANPLFEIQTILGGSSEEGGATHGEQKMSRECYVMALGNI

Query:  DRKAQATSA
            ++ SA
Subjt:  DRKAQATSA

XP_030923408.1 uncharacterized protein LOC115950338 [Quercus lobata]1.1e-1142Show/hide
Query:  DPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRLLLADQGKGGANPLFEIQTILGGSSEEGGATHGEQKMSRECYVMALGNI
        DP++RNKNK C FH DHGH T EC  L+ +IE LIR+G  K FVG D +   L     +    PL EI+ I+GG+        G+   S++ Y+ A+ N+
Subjt:  DPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRLLLADQGKGGANPLFEIQTILGGSSEEGGATHGEQKMSRECYVMALGNI

XP_030958630.1 uncharacterized protein LOC115980537 [Quercus lobata]1.1e-1142Show/hide
Query:  DPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRLLLADQGKGGANPLFEIQTILGGSSEEGGATHGEQKMSRECYVMALGNI
        DP++RNKNK C FH DHGH T EC  L+ +IE LIR+G  K FVG D +   L     +    PL EI+ I+GG+        G+   S++ Y+ A+ N+
Subjt:  DPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRLLLADQGKGGANPLFEIQTILGGSSEEGGATHGEQKMSRECYVMALGNI

XP_030963402.1 uncharacterized protein LOC115984522 [Quercus lobata]2.8e-1240.95Show/hide
Query:  KPDSTDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRLLLADQGKGGANPLFEIQTILGGSSEEGGATHGEQKMSRECYVM
        + D  DP++RNKNK C FH DHGH T EC  L+ +IE LIR+G  K FVG D +   L     +    PL EI+ I+GG+        G+   S++ Y+ 
Subjt:  KPDSTDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRLLLADQGKGGANPLFEIQTILGGSSEEGGATHGEQKMSRECYVM

Query:  ALGNI
        A+ N+
Subjt:  ALGNI

TrEMBL top hitse value%identityAlignment
A0A2N9ERC7 Reverse transcriptase1.8e-0936.63Show/hide
Query:  TDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRLLLADQGKGGANPLFEIQTILGGSSEEGGATHGEQKMSRECYVMALGN
        +DP+ R KN  C FH DHGH T EC+ L++++EALIR+G  + +V      +            P+ EI+TI+GG      A+ G  + SR+ Y   + N
Subjt:  TDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRLLLADQGKGGANPLFEIQTILGGSSEEGGATHGEQKMSRECYVMALGN

Query:  I
        I
Subjt:  I

A0A2N9IJ88 Ribonuclease H9.2e-0937.74Show/hide
Query:  TDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRLLLADQGKGGA-----NPLFEIQTILGGSSEEGGATHGEQKMSRECYV
        +DP+ R KN  C FH DHGH T EC+ L+++IE LIR+G  + +V    + R       +  A      P+ EI+TI+GGS     A+ G  + SR+ Y 
Subjt:  TDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRLLLADQGKGGA-----NPLFEIQTILGGSSEEGGATHGEQKMSRECYV

Query:  MALGNI
          + NI
Subjt:  MALGNI

A0A6J1DV51 uncharacterized protein LOC1110246627.0e-0946.05Show/hide
Query:  PDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRLLLADQGKGGANPLFEIQTILGGSSE
        P++R+K + C+FH DHGHAT++C  L++E+E LIR GY K +V  D    L   +  K   +P+ EIQTI GG +E
Subjt:  PDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRLLLADQGKGGANPLFEIQTILGGSSE

A0A6J1DXB1 uncharacterized protein LOC1110254122.8e-1041.51Show/hide
Query:  KKPD--STDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRLLLADQGKGGANPLFEIQTILGGSSEEG-GATHGEQKMSRE
        K+P+    DP+RRNK+K C FH +HGH T  C +L+ +IE LI++GY K FVG   S   + +            +  +L  S+  G G   GEQK SRE
Subjt:  KKPD--STDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRLLLADQGKGGANPLFEIQTILGGSSEEG-GATHGEQKMSRE

Query:  CYVMAL
        CY  AL
Subjt:  CYVMAL

A0A7J0G924 Retrotrans_gag domain-containing protein4.1e-0938.61Show/hide
Query:  TDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGN---DISKRLLLADQGKGGANPLFEIQTILGGSSEEGGATHGEQKMSRECYVMA
        TDP +RN+NK C FH DHGH T +C QL+++I  LI+ GY + ++ +     S      D      N    IQTI GG     G   G+QK++R+C++ A
Subjt:  TDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGN---DISKRLLLADQGKGGANPLFEIQTILGGSSEEGGATHGEQKMSRECYVMA

Query:  L
        +
Subjt:  L

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCAATTTTGGACCACCCCGATGTACGAGGAGCTGACGAGGACAATCGGACAGGAAGATGGACCAAGGAGGCAAAACCGGCAAGTGAGACGGGCCAAGACCGAAG
GGGTCGGGTTTTAGGCCCGACCCCCTGGTCGGCCTCGGCCATGTGCCAAGGCCGACAGCCCGTTCGGTCTCGTCTGGTCCCCACTGCCTCTGGATGCCCCGGTTTCGCCC
GGTTTGACCTAAAACGCCTCCGAAACCCTAAAAAGGCTAGGAGGATGTACAGCATCGGAGCCAGTGTGGCGAGCACCACACCGGTGCGCAGGTTTACTGTCTTGCAGGCC
ACGTCTTCCCCTTCATCTACAAATTTACCGTTGATGGCACGTGGAGACCGCGCATCGGTGTTGGTCTACAGGATGGATCGGGTTCAGAAACCAGAAAGAAACCTCGGGTA
TGAGCAGAAAACACTGAACAAGACTGGGCTCGACCTCGGTATGGAAAAGGCCGACCCTAACTTCGGAGATTGTTGTAAGGTTCCGTGTGCCCACGATGCTGTGAACCAGA
CTGGGATCGACCTTGGTATGGAAAAGGCCGACCCAAACTTCGGAGATTGTTGTAAGGTTCCGTGTGCCCACGACGCTGTGGACCTGACCCAAGAGGGCAACCAGCAGAAG
GAGAGAGAGAACCGGGAAGCTGCTATATCCGACCAGCATCAAGAAGACAAAGGAAAAGGATGTCGGGTAGAAGATGTAGGCCAGATCCGACATGAGCACCCCTCGGCCAA
TGGCCGAGGCCGAGCAGAAGTCCAATCGCAAAAAAAAAAAAAAAAGCTCGCAGAAGTTTGCCGCAAAAGACAGCGTCGGGTACATACACAGGAAATAATGCTAGGAAAAA
GTCAGAGGCTCGGGCAAAGTCCGAGGCCGACCAGAGGCCAAGGAGCCACAGGGCTGTGCGGAACCAAAAAGCCAGATTCGACAGACCCCGATAGGAGGAACAAAAACAAA
TGCTGCATGTTCCACGGAGACCACGGTCATGCAACCCGGGAATGCATACAGTTGAGGGACGAGATAGAAGCCCTAATCCGAGAAGGTTACCCCAAGGGGTTCGTGGGGAA
CGACATAAGCAAGAGGCTACTGCTGGCAGATCAAGGTAAGGGCGGTGCCAACCCGCTATTTGAGATACAAACAATTTTAGGAGGATCATCCGAAGAAGGTGGAGCAACGC
ATGGCGAGCAAAAAATGTCGAGGGAATGTTACGTTATGGCGCTCGGGAACATCGACAGGAAGGCTCAAGCAACGTCGGCCTTGGGAGATAGCCGAGGCCGAGCCTTTGAG
GGCGCTTGCAGAGAGACTCGGGAGATTCCCAGGCCTCCCAAAGCTTTTCCCCAGAGGAATGTACGCACCCCTGGGAAGACCACAACACTTGACCTGTTATCAGGAGTTGG
TCGGCCTCATGCCAAGGCCGAGGCCGACCACCTAGAGGCTAAGGCCAAACACCACCTTCAAGAGCTCGGTCACGAACTTGAAGAGAGGCTTGGGAAATTCCCAGGCCTCC
CCAAGCTTTTTCCCCAGAAGAGTGTACGCACCCCTGGGATGACCACCACGCTTGAAGAGAGGCCTGGGAAATTCCTAAGCCTCCCCAAGCTTTTTCCCCAGAAGAGTGTA
CGCACCTCTGGGATGACCATGCAGCTTGAAGAGAGGCTCGGGAAATTCCTAGGCCTCCCCAAGCTTTTCCCCAGAAGAGTGTACGCACCCCTGGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGCAATTTTGGACCACCCCGATGTACGAGGAGCTGACGAGGACAATCGGACAGGAAGATGGACCAAGGAGGCAAAACCGGCAAGTGAGACGGGCCAAGACCGAAG
GGGTCGGGTTTTAGGCCCGACCCCCTGGTCGGCCTCGGCCATGTGCCAAGGCCGACAGCCCGTTCGGTCTCGTCTGGTCCCCACTGCCTCTGGATGCCCCGGTTTCGCCC
GGTTTGACCTAAAACGCCTCCGAAACCCTAAAAAGGCTAGGAGGATGTACAGCATCGGAGCCAGTGTGGCGAGCACCACACCGGTGCGCAGGTTTACTGTCTTGCAGGCC
ACGTCTTCCCCTTCATCTACAAATTTACCGTTGATGGCACGTGGAGACCGCGCATCGGTGTTGGTCTACAGGATGGATCGGGTTCAGAAACCAGAAAGAAACCTCGGGTA
TGAGCAGAAAACACTGAACAAGACTGGGCTCGACCTCGGTATGGAAAAGGCCGACCCTAACTTCGGAGATTGTTGTAAGGTTCCGTGTGCCCACGATGCTGTGAACCAGA
CTGGGATCGACCTTGGTATGGAAAAGGCCGACCCAAACTTCGGAGATTGTTGTAAGGTTCCGTGTGCCCACGACGCTGTGGACCTGACCCAAGAGGGCAACCAGCAGAAG
GAGAGAGAGAACCGGGAAGCTGCTATATCCGACCAGCATCAAGAAGACAAAGGAAAAGGATGTCGGGTAGAAGATGTAGGCCAGATCCGACATGAGCACCCCTCGGCCAA
TGGCCGAGGCCGAGCAGAAGTCCAATCGCAAAAAAAAAAAAAAAAGCTCGCAGAAGTTTGCCGCAAAAGACAGCGTCGGGTACATACACAGGAAATAATGCTAGGAAAAA
GTCAGAGGCTCGGGCAAAGTCCGAGGCCGACCAGAGGCCAAGGAGCCACAGGGCTGTGCGGAACCAAAAAGCCAGATTCGACAGACCCCGATAGGAGGAACAAAAACAAA
TGCTGCATGTTCCACGGAGACCACGGTCATGCAACCCGGGAATGCATACAGTTGAGGGACGAGATAGAAGCCCTAATCCGAGAAGGTTACCCCAAGGGGTTCGTGGGGAA
CGACATAAGCAAGAGGCTACTGCTGGCAGATCAAGGTAAGGGCGGTGCCAACCCGCTATTTGAGATACAAACAATTTTAGGAGGATCATCCGAAGAAGGTGGAGCAACGC
ATGGCGAGCAAAAAATGTCGAGGGAATGTTACGTTATGGCGCTCGGGAACATCGACAGGAAGGCTCAAGCAACGTCGGCCTTGGGAGATAGCCGAGGCCGAGCCTTTGAG
GGCGCTTGCAGAGAGACTCGGGAGATTCCCAGGCCTCCCAAAGCTTTTCCCCAGAGGAATGTACGCACCCCTGGGAAGACCACAACACTTGACCTGTTATCAGGAGTTGG
TCGGCCTCATGCCAAGGCCGAGGCCGACCACCTAGAGGCTAAGGCCAAACACCACCTTCAAGAGCTCGGTCACGAACTTGAAGAGAGGCTTGGGAAATTCCCAGGCCTCC
CCAAGCTTTTTCCCCAGAAGAGTGTACGCACCCCTGGGATGACCACCACGCTTGAAGAGAGGCCTGGGAAATTCCTAAGCCTCCCCAAGCTTTTTCCCCAGAAGAGTGTA
CGCACCTCTGGGATGACCATGCAGCTTGAAGAGAGGCTCGGGAAATTCCTAGGCCTCCCCAAGCTTTTCCCCAGAAGAGTGTACGCACCCCTGGGATGA
Protein sequenceShow/hide protein sequence
MEAILDHPDVRGADEDNRTGRWTKEAKPASETGQDRRGRVLGPTPWSASAMCQGRQPVRSRLVPTASGCPGFARFDLKRLRNPKKARRMYSIGASVASTTPVRRFTVLQA
TSSPSSTNLPLMARGDRASVLVYRMDRVQKPERNLGYEQKTLNKTGLDLGMEKADPNFGDCCKVPCAHDAVNQTGIDLGMEKADPNFGDCCKVPCAHDAVDLTQEGNQQK
ERENREAAISDQHQEDKGKGCRVEDVGQIRHEHPSANGRGRAEVQSQKKKKKLAEVCRKRQRRVHTQEIMLGKSQRLGQSPRPTRGQGATGLCGTKKPDSTDPDRRNKNK
CCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRLLLADQGKGGANPLFEIQTILGGSSEEGGATHGEQKMSRECYVMALGNIDRKAQATSALGDSRGRAFE
GACRETREIPRPPKAFPQRNVRTPGKTTTLDLLSGVGRPHAKAEADHLEAKAKHHLQELGHELEERLGKFPGLPKLFPQKSVRTPGMTTTLEERPGKFLSLPKLFPQKSV
RTSGMTMQLEERLGKFLGLPKLFPRRVYAPLG