| GenBank top hits | e value | %identity | Alignment |
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| GAU19483.1 hypothetical protein TSUD_77270 [Trifolium subterraneum] | 3.9e-122 | 41.3 | Show/hide |
Query: AGTTGFNNPPLNQLLNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGSESCPPKFVSSSAAETEDVSLQAQGGASSSQTGASVASRSTPVAAVNPQY
A G NN N L + + S+KLDR N+ LWK+L LP++R KL+G++ G+E CP +F++SS + N +
Subjt: AGTTGFNNPPLNQLLNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGSESCPPKFVSSSAAETEDVSLQAQGGASSSQTGASVASRSTPVAAVNPQY
Query: ESWVAVDQLLLGWLYNSMSPEVATQVMGYENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGSLKMADYLRVMKSHADNLGQAGSPVSTRSLISQVLL
W A DQ LLGW+ NSM+ E+ATQ++ E ++ LW Q L G +R++ YL+ F RKG +KM DYL MK+ D L AG+PVST LI Q L
Subjt: ESWVAVDQLLLGWLYNSMSPEVATQVMGYENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGSLKMADYLRVMKSHADNLGQAGSPVSTRSLISQVLL
Query: GLDEEFNPVVAMIQGRVGITWSEMQAELLVFEKRLELQNTLKTSLTISHGVSVNMATSKDAGGQRGSQQNFPNGSRQGNFGRGNQRG-NGNRGRGRSRGY
GLD E+NPVV + + ++W ++QA+LL FE R+E N L T+LT++ + N+A D G+ S N+ N RG G RGRG+S
Subjt: GLDEEFNPVVAMIQGRVGITWSEMQAELLVFEKRLELQNTLKTSLTISHGVSVNMATSKDAGGQRGSQQNFPNGSRQGNFGRGNQRG-NGNRGRGRSRGY
Query: GGYNNNKPTCQVCGKIGHTALMCYQRFNKEYSGPQIQNRGDGSNFRPNSQINPSQPAAFVASQNTNPFVASPDTVTDPNWYADSGASNHVTADYNNIANP
K CQVCG H A+ C+ RF+K YS + A + N F+AS ++V D +WY DSGASNHVT +
Subjt: GGYNNNKPTCQVCGKIGHTALMCYQRFNKEYSGPQIQNRGDGSNFRPNSQINPSQPAAFVASQNTNPFVASPDTVTDPNWYADSGASNHVTADYNNIANP
Query: VDYEGNECVTVGNGNKLKISCIGNTCLSDGRNSLNLENTLCVPNIAKNLVSISKLARDNDIYVEFHDSFCLVKAKGTGKVLLKGVLNDGLYCFDSVKVTP
++ G + VGNG KL I G++ L SLNL + L VPNI KNL+S+SKLA DN+I VEF ++ C VK K TGKV+LKG+L DGLY K P
Subjt: VDYEGNECVTVGNGNKLKISCIGNTCLSDGRNSLNLENTLCVPNIAKNLVSISKLARDNDIYVEFHDSFCLVKAKGTGKVLLKGVLNDGLYCFDSVKVTP
Query: VGAYKSERWSKKESVNKHGVSGVGAFVISNSVNVVVSKDVWHKRLGHPSLKVLESVLKSCNLPTKVNESVKFCDACQYGKSHALPFPNSLSQASTKFELI
AFV SV K+ WH+RLGHP+ KVL+ VL+SC + +++ FC+ACQYGK H LPF +S S A EL+
Subjt: VGAYKSERWSKKESVNKHGVSGVGAFVISNSVNVVVSKDVWHKRLGHPSLKVLESVLKSCNLPTKVNESVKFCDACQYGKSHALPFPNSLSQASTKFELI
Query: HTDLWGPAPITSTQGFKYYVLFIDDFSRFVWIYPLKQKSDTTAAFSHFLAMVKNQFGWTIR
HTD+WGPAPI ++ GFKYYV F+DDFSRF WIYPLKQKS+T AF F + +NQF I+
Subjt: HTDLWGPAPITSTQGFKYYVLFIDDFSRFVWIYPLKQKSDTTAAFSHFLAMVKNQFGWTIR
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| PNX76291.1 gag/pol polyprotein - maize retrotransposon Hopscotch, partial [Trifolium pratense] | 9.2e-124 | 42.5 | Show/hide |
Query: LNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGSESCPPKFVSSSAAETEDVSLQAQGGASSSQTGASVASRSTPVAAVNPQYESWVAVDQLLLGWL
L S+KLDR N+ LW+++ LPI+R +L+G++ G + CP +F+++ A SS+ NP++E W A DQ LLGWL
Subjt: LNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGSESCPPKFVSSSAAETEDVSLQAQGGASSSQTGASVASRSTPVAAVNPQYESWVAVDQLLLGWL
Query: YNSMSPEVATQVMGYENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGSLKMADYLRVMKSHADNLGQAGSPVSTRSLISQVLLGLDEEFNPVVAMIQ
NSM+ +ATQ++ E + LW Q L G +R++ YL+ F +RKG +KM DYL MK+ AD L AG+P+ST LI Q L GLD E+NPVV +
Subjt: YNSMSPEVATQVMGYENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGSLKMADYLRVMKSHADNLGQAGSPVSTRSLISQVLLGLDEEFNPVVAMIQ
Query: GRVGITWSEMQAELLVFEKRLELQNTLKTSLTISHGVSVNMATSKDAGGQRGSQQNFPNGSRQGNFGRGNQRG-NGNRGRGRSRGYGGYNNNKPTCQVCG
+ ++W ++QA+LL FE R+E N+L T+LT++ + N+A D G R + N GS N+ N RG G RGRGRS K TCQVCG
Subjt: GRVGITWSEMQAELLVFEKRLELQNTLKTSLTISHGVSVNMATSKDAGGQRGSQQNFPNGSRQGNFGRGNQRG-NGNRGRGRSRGYGGYNNNKPTCQVCG
Query: KIGHTALMCYQRFNKEYSGPQIQNRGDGSNFRPNSQINPSQPAAFVASQNTNPFVASPDTVTDPNWYADSGASNHVTADYNNIANPVDYEGNECVTVGNG
H A+ C+ RF+K YS R N N + + N F+AS +++ D +WY DSGASNHVT + N ++ G + VGNG
Subjt: KIGHTALMCYQRFNKEYSGPQIQNRGDGSNFRPNSQINPSQPAAFVASQNTNPFVASPDTVTDPNWYADSGASNHVTADYNNIANPVDYEGNECVTVGNG
Query: NKLKISCIGNTCLSDGRNSLNLENTLCVPNIAKNLVSISKLARDNDIYVEFHDSFCLVKAKGTGKVLLKGVLNDGLYCFDSVKVTPVGAYKSERWSKKES
KL+I G++ L SLNL + L VP I KNL+S+SKLA DN+I VEF ++ C VK K TGK +L+G+L DGLY + S+K+S
Subjt: NKLKISCIGNTCLSDGRNSLNLENTLCVPNIAKNLVSISKLARDNDIYVEFHDSFCLVKAKGTGKVLLKGVLNDGLYCFDSVKVTPVGAYKSERWSKKES
Query: VNKHGVSGVGAFVISNSVNVVVSKDVWHKRLGHPSLKVLESVLKSCNLPTKVNESVKFCDACQYGKSHALPFPNSLSQASTKFELIHTDLWGPAPITSTQ
S V++ K+ WH++LGHP+ KVL+ VLKSCN+ ++ FC+ACQYGK H LPF S S A EL+HTD+WGPAPI S+
Subjt: VNKHGVSGVGAFVISNSVNVVVSKDVWHKRLGHPSLKVLESVLKSCNLPTKVNESVKFCDACQYGKSHALPFPNSLSQASTKFELIHTDLWGPAPITSTQ
Query: GFKYYVLFIDDFSRFVWIYPLKQKSDTTAAFSHFLAMVKNQFGWTIR
GFKYYV FIDDF+RF WIYPLKQKSDT AF F MV+NQF I+
Subjt: GFKYYVLFIDDFSRFVWIYPLKQKSDTTAAFSHFLAMVKNQFGWTIR
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| PNX78574.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Trifolium pratense] | 7.1e-116 | 40.46 | Show/hide |
Query: NQLLNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGSESCPPKFVSSSAAETEDVSLQAQGGASSSQTGASVASRSTPVAAVNPQYESWVAVDQLLL
N L ++I S+ LDR NF LWK+L LPI+R +L+G++ G++ CP +F++S+ A + +NP + W A DQ +L
Subjt: NQLLNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGSESCPPKFVSSSAAETEDVSLQAQGGASSSQTGASVASRSTPVAAVNPQYESWVAVDQLLL
Query: GWLYNSMSPEVATQVMGYENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGSLKMADYLRVMKSHADNLGQAGSPVSTRSLISQVLLGLDEEFNPVVA
GWL N+M+ A+Q++ E ++ LW Q L +R+ YLR F +RKG KM DYL MK AD L AGSP++ LI Q L GLD ++NP+V
Subjt: GWLYNSMSPEVATQVMGYENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGSLKMADYLRVMKSHADNLGQAGSPVSTRSLISQVLLGLDEEFNPVVA
Query: MIQGRVGITWSEMQAELLVFEKRLELQNTLKTSLTISHGVSVNMATSKDAGGQRGSQQNFPNGSRQGNFGRGNQRGNGNRGRGRSRGYGGYNNNKPTCQV
+ ++ ++W ++QA+LL FE RL+ N+ ++ + N+A RG+ N RG+ RG+ R RG G +N+ CQV
Subjt: MIQGRVGITWSEMQAELLVFEKRLELQNTLKTSLTISHGVSVNMATSKDAGGQRGSQQNFPNGSRQGNFGRGNQRGNGNRGRGRSRGYGGYNNNKPTCQV
Query: CGKIGHTALMCYQRFNKEYSGPQIQNRGDGSNFRPNSQINPSQPAAFVASQNT-NPFVASPDTVTDPNWYADSGASNHVTADYNNIANPVDYEGNECVTV
C K GHTA+ C R++K Y+G N A V Q T N F+AS D WY DSGASNHVT + + G + V
Subjt: CGKIGHTALMCYQRFNKEYSGPQIQNRGDGSNFRPNSQINPSQPAAFVASQNT-NPFVASPDTVTDPNWYADSGASNHVTADYNNIANPVDYEGNECVTV
Query: GNGNKLKISCIGNTCLSDGRNSLNLENTLCVPNIAKNLVSISKLARDNDIYVEFHDSFCLVKAKGTGKVLLKGVLNDGLYCFDSVKVTPVGAYKSERWSK
GNG KLKI G++ L +LNL + L VP I KNL+S+SKL DN+I VEF + C VK K TGKVLL+G+L DGLY + S + +K
Subjt: GNGNKLKISCIGNTCLSDGRNSLNLENTLCVPNIAKNLVSISKLARDNDIYVEFHDSFCLVKAKGTGKVLLKGVLNDGLYCFDSVKVTPVGAYKSERWSK
Query: KESVNKHGVSGVGAFVISNSVNVVVSKDVWHKRLGHPSLKVLESVLKSCNLPTKVNESVKFCDACQYGKSHALPFPNSLSQASTKFELIHTDLWGPAPIT
V + K+ WH++LGHPS VL+ VLK CN+ T ++ KFC+ACQ GKSH LPF +S S A ELIHTD+WGPAPI
Subjt: KESVNKHGVSGVGAFVISNSVNVVVSKDVWHKRLGHPSLKVLESVLKSCNLPTKVNESVKFCDACQYGKSHALPFPNSLSQASTKFELIHTDLWGPAPIT
Query: STQGFKYYVLFIDDFSRFVWIYPLKQKSDTTAAFSHFLAMVKNQFGWTIR
S GFKYYV FIDD SRF WIYPLKQKSDT AF F MV+NQF I+
Subjt: STQGFKYYVLFIDDFSRFVWIYPLKQKSDTTAAFSHFLAMVKNQFGWTIR
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| PNX94503.1 putative retrotransposon Ty1-copia subclass protein, partial [Trifolium pratense] | 1.6e-120 | 41.02 | Show/hide |
Query: LNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGSESCPPKFVSSSAAETEDVSLQAQGGASSSQTGASVASRSTPVAAVNPQYESWVAVDQLLLGWL
L S+KLDR NF LWK+L LP++R K +G++ G++ CP +FV +S TE +NP Y+ W A DQ LLGWL
Subjt: LNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGSESCPPKFVSSSAAETEDVSLQAQGGASSSQTGASVASRSTPVAAVNPQYESWVAVDQLLLGWL
Query: YNSMSPEVATQVMGYENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGSLKMADYLRVMKSHADNLGQAGSPVSTRSLISQVLLGLDEEFNPVVAMIQ
NSM+ ++ATQV+ E ++ LW Q L G +R+ YL+ F + K +KM YL MK+ AD L AGSP+S+ L+ Q L GLD E+NPVV +
Subjt: YNSMSPEVATQVMGYENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGSLKMADYLRVMKSHADNLGQAGSPVSTRSLISQVLLGLDEEFNPVVAMIQ
Query: GRVGITWSEMQAELLVFEKRLELQNTLKTSLTISHGVSVNMATSKDAGGQRGSQQNFPNGSRQGNFGRGNQRGNGNRGRGRSRGYGGYNNNKPTCQVCGK
+ I+W + QA+LL FE RL+ N I+ S N A+ ++GG + GSR G G ++ G RGR R +P CQ+CGK
Subjt: GRVGITWSEMQAELLVFEKRLELQNTLKTSLTISHGVSVNMATSKDAGGQRGSQQNFPNGSRQGNFGRGNQRGNGNRGRGRSRGYGGYNNNKPTCQVCGK
Query: IGHTALMCYQRFNKEYSGPQIQNRGDGSNFRPNSQINPSQPAAFVASQNTNPFVASPDTVTDPNWYADSGASNHVTADYNNIANPVDYEGNECVTVGNGN
GHTA CY RF+K Y+ G+GS+ + FVASP D WY DSGASNHVT + + + G + VGNG
Subjt: IGHTALMCYQRFNKEYSGPQIQNRGDGSNFRPNSQINPSQPAAFVASQNTNPFVASPDTVTDPNWYADSGASNHVTADYNNIANPVDYEGNECVTVGNGN
Query: KLKISCIGNTCLSDGRNSLNLENTLCVPNIAKNLVSISKLARDNDIYVEFHDSFCLVKAKGTGKVLLKGVLNDGLYCFDSVKVTPVGAYKSERWSKKESV
KLKI G+T L+D +NL N L VP I KNL+S+SKL DN+ VEF +++C VK K TGK LLKG L DGLY + K P
Subjt: KLKISCIGNTCLSDGRNSLNLENTLCVPNIAKNLVSISKLARDNDIYVEFHDSFCLVKAKGTGKVLLKGVLNDGLYCFDSVKVTPVGAYKSERWSKKESV
Query: NKHGVSGVGAFVISNSVNVVVSKDVWHKRLGHPSLKVLESVLKSCNLPTKVNESVKFCDACQYGKSHALPFPNSLSQASTKFELIHTDLWGPAPITSTQG
NK + + K++WH++LGHP+ KVLE VLK N+ ++ FC+ACQ+GK H LPF S S A +LIHTD+WGPAPI S
Subjt: NKHGVSGVGAFVISNSVNVVVSKDVWHKRLGHPSLKVLESVLKSCNLPTKVNESVKFCDACQYGKSHALPFPNSLSQASTKFELIHTDLWGPAPITSTQG
Query: FKYYVLFIDDFSRFVWIYPLKQKSDTTAAFSHFLAMVKNQFGWTIR
FKYYV F+DDFSRF WI+PLKQKS+T AF+ F +V+NQF I+
Subjt: FKYYVLFIDDFSRFVWIYPLKQKSDTTAAFSHFLAMVKNQFGWTIR
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| PNY01489.1 copia-like polyprotein, partial [Trifolium pratense] | 2.1e-115 | 40.03 | Show/hide |
Query: LNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGSESCPPKFVSSSAAETEDVSLQAQGGASSSQTGASVASRSTPVAAVNPQYESWVAVDQLLLGWL
L I S+KLDR N+ LWK+L LP++R K +G++ G++ CP +FV+S+ + VNP ++ W+A DQ LLGWL
Subjt: LNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGSESCPPKFVSSSAAETEDVSLQAQGGASSSQTGASVASRSTPVAAVNPQYESWVAVDQLLLGWL
Query: YNSMSPEVATQVMGYENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGSLKMADYLRVMKSHADNLGQAGSPVSTRSLISQVLLGLDEEFNPVVAMIQ
NSM+ ++ATQ++ E ++ LW Q L G +++ YL+ F +RKG +KM +YL MK+ +D L +GSP+S L+ Q L GLD E+NPVV +
Subjt: YNSMSPEVATQVMGYENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGSLKMADYLRVMKSHADNLGQAGSPVSTRSLISQVLLGLDEEFNPVVAMIQ
Query: GRVGITWSEMQAELLVFEKRLELQNTLKTSLTISHGVSVNMATSKDAGGQRGSQQNFPNGSRQGNFGRGNQRG-NGNRGRGRSRGYGGYNNNKPTCQVCG
++ ++W ++QA+LL FE RL+ N + LT++ S N A + G + +GN+ R N RG G RG+GR +N K CQVC
Subjt: GRVGITWSEMQAELLVFEKRLELQNTLKTSLTISHGVSVNMATSKDAGGQRGSQQNFPNGSRQGNFGRGNQRG-NGNRGRGRSRGYGGYNNNKPTCQVCG
Query: KIGHTALMCYQRFNKEYSGPQIQNRGDGSNFRPNSQINPSQPAAFVASQNTNPFVASPDTVTDPNWYADSGASNHVTADYNNIANPVDYEGNECVTVGNG
GHTA+ C RF++ Y+G D + + FVASP D WY DSGASNHVT + ++ G + VGNG
Subjt: KIGHTALMCYQRFNKEYSGPQIQNRGDGSNFRPNSQINPSQPAAFVASQNTNPFVASPDTVTDPNWYADSGASNHVTADYNNIANPVDYEGNECVTVGNG
Query: NKLKISCIGNTCLSDGRNSLNLENTLCVPNIAKNLVSISKLARDNDIYVEFHDSFCLVKAKGTGKVLLKGVLNDGLYCFDSVKVTPVGAYKSERWSKKES
KLKI G+T L N+LNL + L VP I KNL+S+SKL DN+I+VEF + C VK K TG+ LLKG L DGLY V S + +K
Subjt: NKLKISCIGNTCLSDGRNSLNLENTLCVPNIAKNLVSISKLARDNDIYVEFHDSFCLVKAKGTGKVLLKGVLNDGLYCFDSVKVTPVGAYKSERWSKKES
Query: VNKHGVSGVGAFVISNSVNVVVSKDVWHKRLGHPSLKVLESVLKSCNLPTKVNESVKFCDACQYGKSHALPFPNSLSQASTKFELIHTDLWGPAPITSTQ
V + K+ WH++LGHP+ KVLE VLK CN+ ++ FC+ACQ+GK H LPF +S S LIH+D+WGPAPI S
Subjt: VNKHGVSGVGAFVISNSVNVVVSKDVWHKRLGHPSLKVLESVLKSCNLPTKVNESVKFCDACQYGKSHALPFPNSLSQASTKFELIHTDLWGPAPITSTQ
Query: GFKYYVLFIDDFSRFVWIYPLKQKSDTTAAFSHFLAMVKNQFGWTIR
GFKYYV FIDDFSRF WI+PLKQKSDT AF F + +NQF I+
Subjt: GFKYYVLFIDDFSRFVWIYPLKQKSDTTAAFSHFLAMVKNQFGWTIR
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| TrEMBL top hits | e value | %identity | Alignment |
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| A0A2K3LCM1 Gag/pol polyprotein-maize retrotransposon Hopscotch (Fragment) | 4.4e-124 | 42.5 | Show/hide |
Query: LNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGSESCPPKFVSSSAAETEDVSLQAQGGASSSQTGASVASRSTPVAAVNPQYESWVAVDQLLLGWL
L S+KLDR N+ LW+++ LPI+R +L+G++ G + CP +F+++ A SS+ NP++E W A DQ LLGWL
Subjt: LNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGSESCPPKFVSSSAAETEDVSLQAQGGASSSQTGASVASRSTPVAAVNPQYESWVAVDQLLLGWL
Query: YNSMSPEVATQVMGYENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGSLKMADYLRVMKSHADNLGQAGSPVSTRSLISQVLLGLDEEFNPVVAMIQ
NSM+ +ATQ++ E + LW Q L G +R++ YL+ F +RKG +KM DYL MK+ AD L AG+P+ST LI Q L GLD E+NPVV +
Subjt: YNSMSPEVATQVMGYENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGSLKMADYLRVMKSHADNLGQAGSPVSTRSLISQVLLGLDEEFNPVVAMIQ
Query: GRVGITWSEMQAELLVFEKRLELQNTLKTSLTISHGVSVNMATSKDAGGQRGSQQNFPNGSRQGNFGRGNQRG-NGNRGRGRSRGYGGYNNNKPTCQVCG
+ ++W ++QA+LL FE R+E N+L T+LT++ + N+A D G R + N GS N+ N RG G RGRGRS K TCQVCG
Subjt: GRVGITWSEMQAELLVFEKRLELQNTLKTSLTISHGVSVNMATSKDAGGQRGSQQNFPNGSRQGNFGRGNQRG-NGNRGRGRSRGYGGYNNNKPTCQVCG
Query: KIGHTALMCYQRFNKEYSGPQIQNRGDGSNFRPNSQINPSQPAAFVASQNTNPFVASPDTVTDPNWYADSGASNHVTADYNNIANPVDYEGNECVTVGNG
H A+ C+ RF+K YS R N N + + N F+AS +++ D +WY DSGASNHVT + N ++ G + VGNG
Subjt: KIGHTALMCYQRFNKEYSGPQIQNRGDGSNFRPNSQINPSQPAAFVASQNTNPFVASPDTVTDPNWYADSGASNHVTADYNNIANPVDYEGNECVTVGNG
Query: NKLKISCIGNTCLSDGRNSLNLENTLCVPNIAKNLVSISKLARDNDIYVEFHDSFCLVKAKGTGKVLLKGVLNDGLYCFDSVKVTPVGAYKSERWSKKES
KL+I G++ L SLNL + L VP I KNL+S+SKLA DN+I VEF ++ C VK K TGK +L+G+L DGLY + S+K+S
Subjt: NKLKISCIGNTCLSDGRNSLNLENTLCVPNIAKNLVSISKLARDNDIYVEFHDSFCLVKAKGTGKVLLKGVLNDGLYCFDSVKVTPVGAYKSERWSKKES
Query: VNKHGVSGVGAFVISNSVNVVVSKDVWHKRLGHPSLKVLESVLKSCNLPTKVNESVKFCDACQYGKSHALPFPNSLSQASTKFELIHTDLWGPAPITSTQ
S V++ K+ WH++LGHP+ KVL+ VLKSCN+ ++ FC+ACQYGK H LPF S S A EL+HTD+WGPAPI S+
Subjt: VNKHGVSGVGAFVISNSVNVVVSKDVWHKRLGHPSLKVLESVLKSCNLPTKVNESVKFCDACQYGKSHALPFPNSLSQASTKFELIHTDLWGPAPITSTQ
Query: GFKYYVLFIDDFSRFVWIYPLKQKSDTTAAFSHFLAMVKNQFGWTIR
GFKYYV FIDDF+RF WIYPLKQKSDT AF F MV+NQF I+
Subjt: GFKYYVLFIDDFSRFVWIYPLKQKSDTTAAFSHFLAMVKNQFGWTIR
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| A0A2K3LJ49 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 3.4e-116 | 40.46 | Show/hide |
Query: NQLLNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGSESCPPKFVSSSAAETEDVSLQAQGGASSSQTGASVASRSTPVAAVNPQYESWVAVDQLLL
N L ++I S+ LDR NF LWK+L LPI+R +L+G++ G++ CP +F++S+ A + +NP + W A DQ +L
Subjt: NQLLNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGSESCPPKFVSSSAAETEDVSLQAQGGASSSQTGASVASRSTPVAAVNPQYESWVAVDQLLL
Query: GWLYNSMSPEVATQVMGYENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGSLKMADYLRVMKSHADNLGQAGSPVSTRSLISQVLLGLDEEFNPVVA
GWL N+M+ A+Q++ E ++ LW Q L +R+ YLR F +RKG KM DYL MK AD L AGSP++ LI Q L GLD ++NP+V
Subjt: GWLYNSMSPEVATQVMGYENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGSLKMADYLRVMKSHADNLGQAGSPVSTRSLISQVLLGLDEEFNPVVA
Query: MIQGRVGITWSEMQAELLVFEKRLELQNTLKTSLTISHGVSVNMATSKDAGGQRGSQQNFPNGSRQGNFGRGNQRGNGNRGRGRSRGYGGYNNNKPTCQV
+ ++ ++W ++QA+LL FE RL+ N+ ++ + N+A RG+ N RG+ RG+ R RG G +N+ CQV
Subjt: MIQGRVGITWSEMQAELLVFEKRLELQNTLKTSLTISHGVSVNMATSKDAGGQRGSQQNFPNGSRQGNFGRGNQRGNGNRGRGRSRGYGGYNNNKPTCQV
Query: CGKIGHTALMCYQRFNKEYSGPQIQNRGDGSNFRPNSQINPSQPAAFVASQNT-NPFVASPDTVTDPNWYADSGASNHVTADYNNIANPVDYEGNECVTV
C K GHTA+ C R++K Y+G N A V Q T N F+AS D WY DSGASNHVT + + G + V
Subjt: CGKIGHTALMCYQRFNKEYSGPQIQNRGDGSNFRPNSQINPSQPAAFVASQNT-NPFVASPDTVTDPNWYADSGASNHVTADYNNIANPVDYEGNECVTV
Query: GNGNKLKISCIGNTCLSDGRNSLNLENTLCVPNIAKNLVSISKLARDNDIYVEFHDSFCLVKAKGTGKVLLKGVLNDGLYCFDSVKVTPVGAYKSERWSK
GNG KLKI G++ L +LNL + L VP I KNL+S+SKL DN+I VEF + C VK K TGKVLL+G+L DGLY + S + +K
Subjt: GNGNKLKISCIGNTCLSDGRNSLNLENTLCVPNIAKNLVSISKLARDNDIYVEFHDSFCLVKAKGTGKVLLKGVLNDGLYCFDSVKVTPVGAYKSERWSK
Query: KESVNKHGVSGVGAFVISNSVNVVVSKDVWHKRLGHPSLKVLESVLKSCNLPTKVNESVKFCDACQYGKSHALPFPNSLSQASTKFELIHTDLWGPAPIT
V + K+ WH++LGHPS VL+ VLK CN+ T ++ KFC+ACQ GKSH LPF +S S A ELIHTD+WGPAPI
Subjt: KESVNKHGVSGVGAFVISNSVNVVVSKDVWHKRLGHPSLKVLESVLKSCNLPTKVNESVKFCDACQYGKSHALPFPNSLSQASTKFELIHTDLWGPAPIT
Query: STQGFKYYVLFIDDFSRFVWIYPLKQKSDTTAAFSHFLAMVKNQFGWTIR
S GFKYYV FIDD SRF WIYPLKQKSDT AF F MV+NQF I+
Subjt: STQGFKYYVLFIDDFSRFVWIYPLKQKSDTTAAFSHFLAMVKNQFGWTIR
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| A0A2K3MUJ9 Putative retrotransposon Ty1-copia subclass protein (Fragment) | 7.9e-121 | 41.02 | Show/hide |
Query: LNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGSESCPPKFVSSSAAETEDVSLQAQGGASSSQTGASVASRSTPVAAVNPQYESWVAVDQLLLGWL
L S+KLDR NF LWK+L LP++R K +G++ G++ CP +FV +S TE +NP Y+ W A DQ LLGWL
Subjt: LNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGSESCPPKFVSSSAAETEDVSLQAQGGASSSQTGASVASRSTPVAAVNPQYESWVAVDQLLLGWL
Query: YNSMSPEVATQVMGYENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGSLKMADYLRVMKSHADNLGQAGSPVSTRSLISQVLLGLDEEFNPVVAMIQ
NSM+ ++ATQV+ E ++ LW Q L G +R+ YL+ F + K +KM YL MK+ AD L AGSP+S+ L+ Q L GLD E+NPVV +
Subjt: YNSMSPEVATQVMGYENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGSLKMADYLRVMKSHADNLGQAGSPVSTRSLISQVLLGLDEEFNPVVAMIQ
Query: GRVGITWSEMQAELLVFEKRLELQNTLKTSLTISHGVSVNMATSKDAGGQRGSQQNFPNGSRQGNFGRGNQRGNGNRGRGRSRGYGGYNNNKPTCQVCGK
+ I+W + QA+LL FE RL+ N I+ S N A+ ++GG + GSR G G ++ G RGR R +P CQ+CGK
Subjt: GRVGITWSEMQAELLVFEKRLELQNTLKTSLTISHGVSVNMATSKDAGGQRGSQQNFPNGSRQGNFGRGNQRGNGNRGRGRSRGYGGYNNNKPTCQVCGK
Query: IGHTALMCYQRFNKEYSGPQIQNRGDGSNFRPNSQINPSQPAAFVASQNTNPFVASPDTVTDPNWYADSGASNHVTADYNNIANPVDYEGNECVTVGNGN
GHTA CY RF+K Y+ G+GS+ + FVASP D WY DSGASNHVT + + + G + VGNG
Subjt: IGHTALMCYQRFNKEYSGPQIQNRGDGSNFRPNSQINPSQPAAFVASQNTNPFVASPDTVTDPNWYADSGASNHVTADYNNIANPVDYEGNECVTVGNGN
Query: KLKISCIGNTCLSDGRNSLNLENTLCVPNIAKNLVSISKLARDNDIYVEFHDSFCLVKAKGTGKVLLKGVLNDGLYCFDSVKVTPVGAYKSERWSKKESV
KLKI G+T L+D +NL N L VP I KNL+S+SKL DN+ VEF +++C VK K TGK LLKG L DGLY + K P
Subjt: KLKISCIGNTCLSDGRNSLNLENTLCVPNIAKNLVSISKLARDNDIYVEFHDSFCLVKAKGTGKVLLKGVLNDGLYCFDSVKVTPVGAYKSERWSKKESV
Query: NKHGVSGVGAFVISNSVNVVVSKDVWHKRLGHPSLKVLESVLKSCNLPTKVNESVKFCDACQYGKSHALPFPNSLSQASTKFELIHTDLWGPAPITSTQG
NK + + K++WH++LGHP+ KVLE VLK N+ ++ FC+ACQ+GK H LPF S S A +LIHTD+WGPAPI S
Subjt: NKHGVSGVGAFVISNSVNVVVSKDVWHKRLGHPSLKVLESVLKSCNLPTKVNESVKFCDACQYGKSHALPFPNSLSQASTKFELIHTDLWGPAPITSTQG
Query: FKYYVLFIDDFSRFVWIYPLKQKSDTTAAFSHFLAMVKNQFGWTIR
FKYYV F+DDFSRF WI+PLKQKS+T AF+ F +V+NQF I+
Subjt: FKYYVLFIDDFSRFVWIYPLKQKSDTTAAFSHFLAMVKNQFGWTIR
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| A0A2Z6MBG6 Integrase catalytic domain-containing protein | 1.9e-122 | 41.3 | Show/hide |
Query: AGTTGFNNPPLNQLLNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGSESCPPKFVSSSAAETEDVSLQAQGGASSSQTGASVASRSTPVAAVNPQY
A G NN N L + + S+KLDR N+ LWK+L LP++R KL+G++ G+E CP +F++SS + N +
Subjt: AGTTGFNNPPLNQLLNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGSESCPPKFVSSSAAETEDVSLQAQGGASSSQTGASVASRSTPVAAVNPQY
Query: ESWVAVDQLLLGWLYNSMSPEVATQVMGYENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGSLKMADYLRVMKSHADNLGQAGSPVSTRSLISQVLL
W A DQ LLGW+ NSM+ E+ATQ++ E ++ LW Q L G +R++ YL+ F RKG +KM DYL MK+ D L AG+PVST LI Q L
Subjt: ESWVAVDQLLLGWLYNSMSPEVATQVMGYENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGSLKMADYLRVMKSHADNLGQAGSPVSTRSLISQVLL
Query: GLDEEFNPVVAMIQGRVGITWSEMQAELLVFEKRLELQNTLKTSLTISHGVSVNMATSKDAGGQRGSQQNFPNGSRQGNFGRGNQRG-NGNRGRGRSRGY
GLD E+NPVV + + ++W ++QA+LL FE R+E N L T+LT++ + N+A D G+ S N+ N RG G RGRG+S
Subjt: GLDEEFNPVVAMIQGRVGITWSEMQAELLVFEKRLELQNTLKTSLTISHGVSVNMATSKDAGGQRGSQQNFPNGSRQGNFGRGNQRG-NGNRGRGRSRGY
Query: GGYNNNKPTCQVCGKIGHTALMCYQRFNKEYSGPQIQNRGDGSNFRPNSQINPSQPAAFVASQNTNPFVASPDTVTDPNWYADSGASNHVTADYNNIANP
K CQVCG H A+ C+ RF+K YS + A + N F+AS ++V D +WY DSGASNHVT +
Subjt: GGYNNNKPTCQVCGKIGHTALMCYQRFNKEYSGPQIQNRGDGSNFRPNSQINPSQPAAFVASQNTNPFVASPDTVTDPNWYADSGASNHVTADYNNIANP
Query: VDYEGNECVTVGNGNKLKISCIGNTCLSDGRNSLNLENTLCVPNIAKNLVSISKLARDNDIYVEFHDSFCLVKAKGTGKVLLKGVLNDGLYCFDSVKVTP
++ G + VGNG KL I G++ L SLNL + L VPNI KNL+S+SKLA DN+I VEF ++ C VK K TGKV+LKG+L DGLY K P
Subjt: VDYEGNECVTVGNGNKLKISCIGNTCLSDGRNSLNLENTLCVPNIAKNLVSISKLARDNDIYVEFHDSFCLVKAKGTGKVLLKGVLNDGLYCFDSVKVTP
Query: VGAYKSERWSKKESVNKHGVSGVGAFVISNSVNVVVSKDVWHKRLGHPSLKVLESVLKSCNLPTKVNESVKFCDACQYGKSHALPFPNSLSQASTKFELI
AFV SV K+ WH+RLGHP+ KVL+ VL+SC + +++ FC+ACQYGK H LPF +S S A EL+
Subjt: VGAYKSERWSKKESVNKHGVSGVGAFVISNSVNVVVSKDVWHKRLGHPSLKVLESVLKSCNLPTKVNESVKFCDACQYGKSHALPFPNSLSQASTKFELI
Query: HTDLWGPAPITSTQGFKYYVLFIDDFSRFVWIYPLKQKSDTTAAFSHFLAMVKNQFGWTIR
HTD+WGPAPI ++ GFKYYV F+DDFSRF WIYPLKQKS+T AF F + +NQF I+
Subjt: HTDLWGPAPITSTQGFKYYVLFIDDFSRFVWIYPLKQKSDTTAAFSHFLAMVKNQFGWTIR
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| A0A803PEH4 Uncharacterized protein | 3.0e-128 | 41.51 | Show/hide |
Query: MASANSTGISALSAGTTGFNNPPLNQL--------LNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGSESCPPKFVSSSAAETEDVSLQAQGGASS
+++A+S S+++ ++ N +QL LNQ S+KLDR N+ LWK + I+R ++L G+LSG+ CPP+FV +T+
Subjt: MASANSTGISALSAGTTGFNNPPLNQL--------LNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGSESCPPKFVSSSAAETEDVSLQAQGGASS
Query: SQTGASVASRSTPVAAVNPQYESWVAVDQLLLGWLYNSMSPEVATQVMGYENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGSLKMADYLRVMKSHA
NP+YE+W+ DQLL+GWLY+SM+ +AT+VMG +A +L ++ L+G S+++ D R + Q +RKGS M++YLR K+ +
Subjt: SQTGASVASRSTPVAAVNPQYESWVAVDQLLLGWLYNSMSPEVATQVMGYENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGSLKMADYLRVMKSHA
Query: DNLGQAGSPVSTRSLISQVLLGLDEEFNPVVAMIQGRVGITWSEMQAELLVFEKRLE-LQN-TLKTSLTISHGVSVNMATSKDAGGQ-RGSQQNFPNGSR
+ L AG P L++ VL GLD E+ +V I+ R TW E+Q LL F+ ++E LQN TL ++ S NMA + G+ RG Q + +
Subjt: DNLGQAGSPVSTRSLISQVLLGLDEEFNPVVAMIQGRVGITWSEMQAELLVFEKRLE-LQN-TLKTSLTISHGVSVNMATSKDAGGQ-RGSQQNFPNGSR
Query: QGNFGRGNQRGNGNRGRGRSRGYGGYNNNKPTCQVCGKIGHTALMCYQRFNKEYSGPQIQNRGDGSNFRPNSQINPSQPAAFVASQNTNPFVASPDTVTD
G F N RG NR RGR RG G + ++PTCQV GK GHTA +CY RF++ Y G N P++Q Q + N + FVA+P+ +
Subjt: QGNFGRGNQRGNGNRGRGRSRGYGGYNNNKPTCQVCGKIGHTALMCYQRFNKEYSGPQIQNRGDGSNFRPNSQINPSQPAAFVASQNTNPFVASPDTVTD
Query: PNWYADSGASNHVTADYNNIANPVDYEGNECVTVGNGNKLKISCIGNTCLS-DGRNSLNLENTLCVPNIAKNLVSISKLARDNDIYVEFHDSFCLVKAKG
W+ADSGASNH+T+D N+ DY G E V VGNG+KL+I+ IGN L+ + N L L++ L VP IAKNLVS+SKLA DN++ +EF+ +FCLVK K
Subjt: PNWYADSGASNHVTADYNNIANPVDYEGNECVTVGNGNKLKISCIGNTCLS-DGRNSLNLENTLCVPNIAKNLVSISKLARDNDIYVEFHDSFCLVKAKG
Query: TGKVLLKGVLNDGLYCFDSVKVTPVGAYKSERWSKKESVNKHGVSGVGAFVISNSVNV---------VVSKDVWHKRLGHPSLKVLESVLKSCNLPTKVN
T KVLL GVL D LY DS Y+ + + AF IS NV + DV H+RLGHPS+KVL VL+S N+ N
Subjt: TGKVLLKGVLNDGLYCFDSVKVTPVGAYKSERWSKKESVNKHGVSGVGAFVISNSVNV---------VVSKDVWHKRLGHPSLKVLESVLKSCNLPTKVN
Query: ESVKFCDACQYGKSHALPFPNSLSQASTKFELIHTDLWGPAPITSTQGFKYYVLFIDDFSRFVWIYPLKQKSDTTAAFSHFLAMVKNQF
CDACQYGK+HALPF +S ++A + +LIHTDLWGPAPI S YY+ F+DD+SR+ W+YPLK KSD AAF F A+V+NQF
Subjt: ESVKFCDACQYGKSHALPFPNSLSQASTKFELIHTDLWGPAPITSTQGFKYYVLFIDDFSRFVWIYPLKQKSDTTAAFSHFLAMVKNQF
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| SwissProt top hits | e value | %identity | Alignment |
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| P04146 Copia protein | 5.8e-12 | 24.33 | Show/hide |
Query: NRGRGRSRGYGGYNNNKPTCQVCGKIGHTALMCYQRFNKEYSGPQIQNRGDGSNFRPNSQINPSQPAAFVASQNTNPFVASPDTVTDPNWYADSGASNHV
NR + + G + K C CG+ GH C+ +I N + N Q S AF+ + N V + + + DSGAS+H+
Subjt: NRGRGRSRGYGGYNNNKPTCQVCGKIGHTALMCYQRFNKEYSGPQIQNRGDGSNFRPNSQINPSQPAAFVASQNTNPFVASPDTVTDPNWYADSGASNHV
Query: TADYNNIANPVDYEGNECVTVGNGNKLKISCIGNTCLSDGRNSLNLENTLCVPNIAKNLVSISKLARDNDIYVEFHDSFCLVKAKGTGKVLLKGVLNDGL
D + + V+ + V + + + + LE+ L A NL+S+ +L ++ + +EF S + G V G+LN
Subjt: TADYNNIANPVDYEGNECVTVGNGNKLKISCIGNTCLSDGRNSLNLENTLCVPNIAKNLVSISKLARDNDIYVEFHDSFCLVKAKGTGKVLLKGVLNDGL
Query: YCFDSVKVTPVGAYKSERWSKKESVN-KHGVSGVGAFVISNSVNVVVSKDVWHKRLGHPS-LKVLE----SVLKSCNLPTKVNESVKFCDACQYGKSHAL
+V V AY S+N KH N+ +WH+R GH S K+LE ++ +L + S + C+ C GK L
Subjt: YCFDSVKVTPVGAYKSERWSKKESVN-KHGVSGVGAFVISNSVNVVVSKDVWHKRLGHPS-LKVLE----SVLKSCNLPTKVNESVKFCDACQYGKSHAL
Query: PFPNSLSQASTKFEL--IHTDLWGPAPITSTQGFKYYVLFIDDFSRFVWIYPLKQKSDTTAAFSHFLAMVKNQF
PF + K L +H+D+ GP + Y+V+F+D F+ + Y +K KSD + F F+A + F
Subjt: PFPNSLSQASTKFEL--IHTDLWGPAPITSTQGFKYYVLFIDDFSRFVWIYPLKQKSDTTAAFSHFLAMVKNQF
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 8.3e-27 | 25.27 | Show/hide |
Query: ESWVAVDQLLLGWLYNSMSPEVATQVMGYENAQDLWAAVQELFGVQSRAEEDYL-RQVFQQSRKGSLKMADYLRVMKSHADNLGQAGSPVSTRSLISQVL
E W +D+ + +S +V ++ + A+ +W ++ L+ ++ + YL +Q++ +L V L G + +L
Subjt: ESWVAVDQLLLGWLYNSMSPEVATQVMGYENAQDLWAAVQELFGVQSRAEEDYL-RQVFQQSRKGSLKMADYLRVMKSHADNLGQAGSPVSTRSLISQVL
Query: LGLDEEF-NPVVAMIQGRVGITWSEMQAELLVFEK-RLELQNTLKTSLTISHGVSVNMATSKDAGGQRGSQQNFPNGSRQGNFGRGNQRGNGNRGRGRSR
L + N ++ G+ I ++ + LL+ EK R + +N + +T G S QR S N+GR RG ++ R +SR
Subjt: LGLDEEF-NPVVAMIQGRVGITWSEMQAELLVFEK-RLELQNTLKTSLTISHGVSVNMATSKDAGGQRGSQQNFPNGSRQGNFGRGNQRGNGNRGRGRSR
Query: GYGGYNNNKPTCQVCGKIGHTALMCYQRFNKEYSGPQIQNRGDGSNFRPNSQINPSQPAAFVA-SQNTNPFVASPD-----TVTDPNWYADSGASNHVTA
YN N+P GH F ++ P+ +G G + Q N AA V + N F+ + + + W D+ AS+H T
Subjt: GYGGYNNNKPTCQVCGKIGHTALMCYQRFNKEYSGPQIQNRGDGSNFRPNSQINPSQPAAFVA-SQNTNPFVASPD-----TVTDPNWYADSGASNHVTA
Query: DYNNIANPVDYEGNECVTVGNGNKLKISCIGNTCLSDGRN-SLNLENTLCVPNIAKNLVSISKLARDNDIYVEFHDSFCLVKAKGTGKVLLKGVLNDGLY
+ V + V +GN + KI+ IG+ C+ +L L++ VP++ NL IS +A D D Y + + KG+ V+ KGV LY
Subjt: DYNNIANPVDYEGNECVTVGNGNKLKISCIGNTCLSDGRN-SLNLENTLCVPNIAKNLVSISKLARDNDIYVEFHDSFCLVKAKGTGKVLLKGVLNDGLY
Query: CFDSVKVTPVGAYKSERWSKKESVNKHGVSGVGAFVISNSVNVVVSKDVWHKRLGHPSLKVLESVLKSCNLPTKVNESVKFCDACQYGKSHALPFPNSLS
N G N+ +S D+WHKR+GH S K L+ + K + +VK CD C +GK H + F S
Subjt: CFDSVKVTPVGAYKSERWSKKESVNKHGVSGVGAFVISNSVNVVVSKDVWHKRLGHPSLKVLESVLKSCNLPTKVNESVKFCDACQYGKSHALPFPNSLS
Query: QASTKFELIHTDLWGPAPITSTQGFKYYVLFIDDFSRFVWIYPLKQKSDTTAAFSHFLAMVKNQFG
+ +L+++D+ GP I S G KY+V FIDD SR +W+Y LK K F F A+V+ + G
Subjt: QASTKFELIHTDLWGPAPITSTQGFKYYVLFIDDFSRFVWIYPLKQKSDTTAAFSHFLAMVKNQFG
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| Q12337 Transposon Ty2-GR1 Gag-Pol polyprotein | 5.8e-12 | 23.83 | Show/hide |
Query: SRGYGGYNNNKPTCQVCGKIGHTALMCYQRFNKEY---SGPQIQNRGDGSNFRPNSQINPSQPAAFVASQNTNPFVASPDTVTDPNWYADSGASNHV--T
+R Y N++KP I ++ + R N ++ S Q D Q S+P + S + P + DSGAS + +
Subjt: SRGYGGYNNNKPTCQVCGKIGHTALMCYQRFNKEY---SGPQIQNRGDGSNFRPNSQINPSQPAAFVASQNTNPFVASPDTVTDPNWYADSGASNHV--T
Query: ADYNNIANPVDYEGNECVTVGNGNK--LKISCIGNTCLSDGRNSLNLENTLCVPNIAKNLVSISKLARDNDIYVEFHDSFCLVK---AKGTGKVLLKGVL
A Y + A P N + + + K + I+ IGN + + L PNIA +L+S+S+LA N + C + + G VL V
Subjt: ADYNNIANPVDYEGNECVTVGNGNK--LKISCIGNTCLSDGRNSLNLENTLCVPNIAKNLVSISKLARDNDIYVEFHDSFCLVK---AKGTGKVLLKGVL
Query: NDGLYCFDSVKVTP--VGAYKSERWSKKESVNKHGVSGVGAFVISNSVNVVVSKDVWHKRLGHPSLKVLESVLKSCNLPTKV--------NESVKFCDAC
+ Y + P + +K +SVNK+ + H+ LGH + + ++ LK N T + N S C C
Subjt: NDGLYCFDSVKVTP--VGAYKSERWSKKESVNKHGVSGVGAFVISNSVNVVVSKDVWHKRLGHPSLKVLESVLKSCNLPTKV--------NESVKFCDAC
Query: QYGKS----HALPFPNSLSQASTKFELIHTDLWGPAPITSTQGFKYYVLFIDDFSRFVWIYPLKQKSDTTA--AFSHFLAMVKNQF
GKS H ++ F+ +HTD++GP Y++ F D+ +RF W+YPL + + + F+ LA +KNQF
Subjt: QYGKS----HALPFPNSLSQASTKFELIHTDLWGPAPITSTQGFKYYVLFIDDFSRFVWIYPLKQKSDTTA--AFSHFLAMVKNQF
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 1.1e-63 | 29.18 | Show/hide |
Query: NNPPLNQLLNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGSESCPPKFVSSSAAETEDVSLQAQGGASSSQTGASVASRSTPVAAVNPQYESWVAV
N LN ++ +T KL N+L+W + Y+L G L GS + PP + + AA VNP Y W
Subjt: NNPPLNQLLNQITSIKLDRGNFLLWKNLALPILRSYKLEGHLSGSESCPPKFVSSSAAETEDVSLQAQGGASSSQTGASVASRSTPVAAVNPQYESWVAV
Query: DQLLLGWLYNSMSPEVATQVMGYENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGSLKMADYLRVMKSHADNLGQAGSPVSTRSLISQVLLGLDEEF
D+L+ + ++S V V A +W +++++ S LR +Q KG+ + DY++ + + D L G P+ + +VL L EE+
Subjt: DQLLLGWLYNSMSPEVATQVMGYENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGSLKMADYLRVMKSHADNLGQAGSPVSTRSLISQVLLGLDEEF
Query: NPVVAMIQGR-VGITWSEMQAELLVFEKRLELQNTLKTSLTISHGVSVNMATSKDAGGQRGSQQNFPNGSRQGNFGRGNQRGNGNRGRGRSRGYGGYNN-
PV+ I + T +E+ LL E ++ L +S + + + + + N NG+R + N N + S + NN
Subjt: NPVVAMIQGR-VGITWSEMQAELLVFEKRLELQNTLKTSLTISHGVSVNMATSKDAGGQRGSQQNFPNGSRQGNFGRGNQRGNGNRGRGRSRGYGGYNN-
Query: NKP---TCQVCGKIGHTALMC--YQRFNKEYSGPQIQNRGDGSNFRPNSQINPSQPAAFVASQNTNPFVASPDTVTDPNWYADSGASNHVTADYNNIANP
+KP CQ+CG GH+A C Q F + Q P S P QP A +A + SP + NW DSGA++H+T+D+NN++
Subjt: NKP---TCQVCGKIGHTALMC--YQRFNKEYSGPQIQNRGDGSNFRPNSQINPSQPAAFVASQNTNPFVASPDTVTDPNWYADSGASNHVTADYNNIANP
Query: VDYEGNECVTVGNGNKLKISCIGNTCLSDGRNSLNLENTLCVPNIAKNLVSISKLARDNDIYVEFHDSFCLVKAKGTGKVLLKGVLNDGLYCFDSVKVTP
Y G + V V +G+ + IS G+T LS LNL N L VPNI KNL+S+ +L N + VEF + VK TG LL+G D LY + P
Subjt: VDYEGNECVTVGNGNKLKISCIGNTCLSDGRNSLNLENTLCVPNIAKNLVSISKLARDNDIYVEFHDSFCLVKAKGTGKVLLKGVLNDGLYCFDSVKVTP
Query: VGAYKSERWSKKESVNKHGVSGVGAFVISNSVNVVVSKDVWHKRLGHPSLKVLESVLKSCNLPTKVNESVKF--CDACQYGKSHALPFPNSLSQASTKFE
V + S S K + WH RLGHP+ +L SV+ + +L + +N S KF C C KS+ +PF S ++ E
Subjt: VGAYKSERWSKKESVNKHGVSGVGAFVISNSVNVVVSKDVWHKRLGHPSLKVLESVLKSCNLPTKVNESVKF--CDACQYGKSHALPFPNSLSQASTKFE
Query: LIHTDLWGPAPITSTQGFKYYVLFIDDFSRFVWIYPLKQKSDTTAAFSHFLAMVKNQF
I++D+W +PI S ++YYV+F+D F+R+ W+YPLKQKS F F +++N+F
Subjt: LIHTDLWGPAPITSTQGFKYYVLFIDDFSRFVWIYPLKQKSDTTAAFSHFLAMVKNQF
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 6.7e-53 | 28.62 | Show/hide |
Query: VAAVNPQYESWVAVDQLLLGWLYNSMSPEVATQVMGYENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGSLKMADYLRVMKSHADNLGQAGSPVSTR
V VNP Y W D+L+ + ++S V V A +W +++++ S LR + + D L G P+
Subjt: VAAVNPQYESWVAVDQLLLGWLYNSMSPEVATQVMGYENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGSLKMADYLRVMKSHADNLGQAGSPVSTR
Query: SLISQVLLGLDEEFNPVVAMIQGR-VGITWSEMQAELLVFEKRLELQNTLKTSLTISHGVSVNMATSKDAGGQRGSQQNFPNGSRQGNFGRGNQRGNGNR
+ +VL L +++ PV+ I + + +E+ L+ E +L N+ + ++ V+ + RG +N+ N + + N + + G+ +
Subjt: SLISQVLLGLDEEFNPVVAMIQGR-VGITWSEMQAELLVFEKRLELQNTLKTSLTISHGVSVNMATSKDAGGQRGSQQNFPNGSRQGNFGRGNQRGNGNR
Query: GRGRSRGYGGYNNNKPTCQVCGKIGHTALMCYQRFNKEYSGPQIQNRGDGSNFRPNSQINPSQPAAFVASQNTNPFVASPDTVTDPNWYADSGASNHVTA
R + + Y G CQ+C GH+A C Q + + Q Q+ S P QP A +A +P+ A+ NW DSGA++H+T+
Subjt: GRGRSRGYGGYNNNKPTCQVCGKIGHTALMCYQRFNKEYSGPQIQNRGDGSNFRPNSQINPSQPAAFVASQNTNPFVASPDTVTDPNWYADSGASNHVTA
Query: DYNNIANPVDYEGNECVTVGNGNKLKISCIGNTCLSDGRNSLNLENTLCVPNIAKNLVSISKLARDNDIYVEFHDSFCLVKAKGTGKVLLKGVLNDGLYC
D+NN++ Y G + V + +G+ + I+ G+ L SL+L L VPNI KNL+S+ +L N + VEF + VK TG LL+G D LY
Subjt: DYNNIANPVDYEGNECVTVGNGNKLKISCIGNTCLSDGRNSLNLENTLCVPNIAKNLVSISKLARDNDIYVEFHDSFCLVKAKGTGKVLLKGVLNDGLYC
Query: FDSVKVTPVGAYKSERWSKKESVNKHGVSGVGAFVISNSVNVVVSKDVWHKRLGHPSLKVLESVLKSCNLPTKVNESVKF--CDACQYGKSHALPFPNSL
+ V + S SK + WH RLGHPSL +L SV+ + +LP +N S K C C KSH +PF NS
Subjt: FDSVKVTPVGAYKSERWSKKESVNKHGVSGVGAFVISNSVNVVVSKDVWHKRLGHPSLKVLESVLKSCNLPTKVNESVKF--CDACQYGKSHALPFPNSL
Query: SQASTKFELIHTDLWGPAPITSTQGFKYYVLFIDDFSRFVWIYPLKQKSDTTAAFSHFLAMVKNQF
+S E I++D+W +PI S ++YYV+F+D F+R+ W+YPLKQKS F F ++V+N+F
Subjt: SQASTKFELIHTDLWGPAPITSTQGFKYYVLFIDDFSRFVWIYPLKQKSDTTAAFSHFLAMVKNQF
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162) | 9.2e-05 | 26.96 | Show/hide |
Query: SWVAVDQLLLGWLYNSMSP-EVATQVMGYENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGSLKMADYLRVMKSHADNLGQAGSPVSTRSLISQVLL
+W D ++ LY +++P + + ++D+W ++ F A L + G +++ADY R MK AD+L PV+ R+L+ VL
Subjt: SWVAVDQLLLGWLYNSMSP-EVATQVMGYENAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGSLKMADYLRVMKSHADNLGQAGSPVSTRSLISQVLL
Query: GLDEEFNPVVAMIQGRVGITWSEMQAELLVFEKRLELQNTLKTSLT-ISHGVSVNMATSKDAGGQRGSQQNFPNGSRQGNFGRGNQRGNGNRGRGRSRGY
GL+ +F+ ++ +I+ R S A ++ E+ L+ +K + T + H S + +A Q++ G++ G GRG RGN N RGR +
Subjt: GLDEEFNPVVAMIQGRVGITWSEMQAELLVFEKRLELQNTLKTSLT-ISHGVSVNMATSKDAGGQRGSQQNFPNGSRQGNFGRGNQRGNGNRGRGRSRGY
Query: GGYN
YN
Subjt: GGYN
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| AT5G48050.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162) | 2.9e-06 | 24.19 | Show/hide |
Query: WVAVDQLLLGWLYNSMSPEVATQVMGYE-NAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGSLKMADYLRVMKSHADNLGQAGSPVSTRSLISQVLLG
W D L+ W+Y +++ + ++ A+DLW +++ LF A + + L + +Y + +KS +D L SP+S R L+ +L G
Subjt: WVAVDQLLLGWLYNSMSPEVATQVMGYE-NAQDLWAAVQELFGVQSRAEEDYLRQVFQQSRKGSLKMADYLRVMKSHADNLGQAGSPVSTRSLISQVLLG
Query: LDEEFNPVVAMIQGRVGI-TWSEMQAELLVFEKRLELQNTLKTSLTISHGVSVNMATSKDAGGQRGSQQNFPNGSRQGNFGRGNQRGNGNRGRGRSRGYG
L E+++ ++ +I+ + +++E ++ LL+ E R L N K+SL+ ++ S++ Q Q + N + N GRG + NRG G S G
Subjt: LDEEFNPVVAMIQGRVGI-TWSEMQAELLVFEKRLELQNTLKTSLTISHGVSVNMATSKDAGGQRGSQQNFPNGSRQGNFGRGNQRGNGNRGRGRSRGYG
Query: GYNNNKPTCQVCGKIGHTALMCYQRFNKEYSGPQIQNRGDGSNFRPNSQINPSQPAAFVASQNTNPFVASPDTVTDP
NNN ++ Y Y P G F P QP +++ + P SP ++ +P
Subjt: GYNNNKPTCQVCGKIGHTALMCYQRFNKEYSGPQIQNRGDGSNFRPNSQINPSQPAAFVASQNTNPFVASPDTVTDP
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| ATMG00300.1 Gag-Pol-related retrotransposon family protein | 1.4e-08 | 35.82 | Show/hide |
Query: VWHKRLGHPSLKVLESVLKSCNLPTKVNESVKFCDACQYGKSHALPFPNSLSQASTKFELIHTDLWG
+WH RL H S + +E ++K L + S+KFC+ C YGK+H + F + +H+DLWG
Subjt: VWHKRLGHPSLKVLESVLKSCNLPTKVNESVKFCDACQYGKSHALPFPNSLSQASTKFELIHTDLWG
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