| GenBank top hits | e value | %identity | Alignment |
|---|
| XP_008444981.1 PREDICTED: RNA polymerase sigma factor sigC [Cucumis melo] | 1.6e-242 | 79.43 | Show/hide |
Query: MGTSFRPNLKWAFQIQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDLLDLEEIEINSRAKSLNHLHYG
MGT FRPNLKW FQIQTHS K+SPSKLSPYASKGREA+FNS RLSFFS+ICEEGESI RETLKTYTCLSEAPQTS DDLL+LEEIE+NS AKSL+ LHYG
Subjt: MGTSFRPNLKWAFQIQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDLLDLEEIEINSRAKSLNHLHYG
Query: IKNTRLSKVDDNFSSCTSLPTGKASPFGI-------------------------------------------------------LALEDGGDHNLNQKTD
IK+TR SKV+DNFSS TS+PTGKASPFGI L +EDG DHN+NQKT+
Subjt: IKNTRLSKVDDNFSSCTSLPTGKASPFGI-------------------------------------------------------LALEDGGDHNLNQKTD
Query: DHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEKFRNSAILSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMS
D D+ VYSGKRAGRRSVKKRA+DNADKVAS+P+ATRA KEK +S I SRK++SNS KRRL+VARNEAEMSTG+KVVANLERI+ETLEKESGRIASMS
Subjt: DHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEKFRNSAILSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMS
Query: CWADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQI
CWA+AA VDIKDLQKQLQFGWFC+DELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQI
Subjt: CWADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQI
Query: PWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEGLES
PWSLTKAINQIQKARK LN GGRRYSDDDIA+ATGLPL+KVRVASNCLKVVGS+DQKMGDGLNMKYMEF ADTSIQSPEETVKRKLMKKDIFN+L+GLES
Subjt: PWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEGLES
Query: RERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLSHYLD
RERQVL LRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLK++ETV+NLSHYLD
Subjt: RERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLSHYLD
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| XP_022131819.1 RNA polymerase sigma factor sigC isoform X1 [Momordica charantia] | 2.7e-237 | 78.07 | Show/hide |
Query: MGTSFRPNLKWAFQIQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDLLDLEEIEINSRAKSLNHLHYG
MGTSFRPNLKWAFQ+QTHSR SPSK P+ASKGREASFNSARLSFFSAICEEGES SRETLKTYTCLSEAPQTSADDLLDL+EIEINSRA+ L+H HYG
Subjt: MGTSFRPNLKWAFQIQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDLLDLEEIEINSRAKSLNHLHYG
Query: IKNTRLSKVDDNFSSCTSLPTGKASPFGI---------------------------------------------------------LALEDGGDHNLNQK
IKNT SK++DNFSSCTSLPTGKAS FG+ L +EDGG HN+NQK
Subjt: IKNTRLSKVDDNFSSCTSLPTGKASPFGI---------------------------------------------------------LALEDGGDHNLNQK
Query: TDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEKFRNSAILSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIAS
TD +DIIVYSGK+ GRRS+K+RA D ADKVASQP AT AAKEKF NSA RKR NSR+RRL+VARNEAEMSTGVKVVANLERI+ETLEKES + AS
Subjt: TDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEKFRNSAILSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIAS
Query: MSCWADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
MSCWADAA +DIKDL KQLQFGWFCQ+ELLRSTNSLV+FLAKKYRC+GLPMEDLVQAGA+GVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Subjt: MSCWADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Query: QIPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEGL
QIPWSLTKAINQIQKARK LNNG RRYSDDDIAKATGLPL+KVRVASNCLKVVGS+DQKMGDGLNMKYMEF ADTSIQSPEETVK+KLMKKDIFNLLEGL
Subjt: QIPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEGL
Query: ESRERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLSHYLD
E RERQVLALRYGL DFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLK++ET NL HYLD
Subjt: ESRERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLSHYLD
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| XP_022131821.1 RNA polymerase sigma factor sigC isoform X2 [Momordica charantia] | 9.6e-243 | 86.71 | Show/hide |
Query: MGTSFRPNLKWAFQIQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDLLDLEEIEINSRAKSLNHLHYG
MGTSFRPNLKWAFQ+QTHSR SPSK P+ASKGREASFNSARLSFFSAICEEGES SRETLKTYTCLSEAPQTSADDLLDL+EIEINSRA+ L+H HYG
Subjt: MGTSFRPNLKWAFQIQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDLLDLEEIEINSRAKSLNHLHYG
Query: IKNTRLSKVDDNFSSCTSLPTGKASPFGILALEDGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEKFRNSAILSRKRA
IKNT SK++DNFSSCTSLPTGKAS F L +EDGG HN+NQKTD +DIIVYSGK+ GRRS+K+RA D ADKVASQP AT AAKEKF NSA RKR
Subjt: IKNTRLSKVDDNFSSCTSLPTGKASPFGILALEDGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEKFRNSAILSRKRA
Query: SNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQA
NSR+RRL+VARNEAEMSTGVKVVANLERI+ETLEKES + ASMSCWADAA +DIKDL KQLQFGWFCQ+ELLRSTNSLV+FLAKKYRC+GLPMEDLVQA
Subjt: SNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQA
Query: GALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLD
GA+GVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARK LNNG RRYSDDDIAKATGLPL+KVRVASNCLKVVGS+D
Subjt: GALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLD
Query: QKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLS
QKMGDGLNMKYMEF ADTSIQSPEETVK+KLMKKDIFNLLEGLE RERQVLALRYGL DFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLK++ET NL
Subjt: QKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLS
Query: HYLD
HYLD
Subjt: HYLD
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| XP_022996944.1 RNA polymerase sigma factor sigC-like isoform X2 [Cucurbita maxima] | 3.0e-236 | 78.21 | Show/hide |
Query: MGTSFRPNLKWAFQIQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDLLDLEEIEINSRAKSLNHLHYG
MGTSFRPNLKWAFQIQTHSR++SPSKLSPYASKGREASFNS RLSFFS+ CEEGE+ISRE LKTYTCLSEAPQT AD LLDLEE EINS AKSL+HLHYG
Subjt: MGTSFRPNLKWAFQIQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDLLDLEEIEINSRAKSLNHLHYG
Query: IKNTRLSKVDDNFSSCTSLPTGKASPF-----------------GILALED---------------------------------------GGDHNLNQKT
KN+ SKV+DNF SCTSLPTG+ASPF G+L+LE GGDHN+NQKT
Subjt: IKNTRLSKVDDNFSSCTSLPTGKASPF-----------------GILALED---------------------------------------GGDHNLNQKT
Query: DDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEKFRNSAILSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASM
DD +IIVYSGKRAGRRSVK+RA+DNADKVAS+P+ATRAAKEKFR+ SRK+ASNS+KRR IVARNEAEMSTGVKVVANLERI+ETLEKESGR ASM
Subjt: DDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEKFRNSAILSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASM
Query: SCWADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
SCWADA+ +DIKDLQKQLQFGWFCQDELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGA+GVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVAR+SRGIQ
Subjt: SCWADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
Query: IPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEGLE
IPWSLTKAINQIQKARK LNN GRRYSDDD+AKATGLPL+KVRVASNCLKVVGS+DQK+GDGLNMKYME ADTSI+SPE+TVKR+LMKKDIFNLLE LE
Subjt: IPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEGLE
Query: SRERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLSHYLD
SRERQVL LRYGLMD QPKSLEEIGKLL VSKEWVRKIE+KA TKLK++ETVRNLSHYLD
Subjt: SRERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLSHYLD
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| XP_038884658.1 RNA polymerase sigma factor sigC isoform X1 [Benincasa hispida] | 1.2e-240 | 78.51 | Show/hide |
Query: MGTSFRPNLKWAFQIQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDLLDLEEIEINSRAKSLNHLHYG
MGTSFRPNLKW FQIQTHSRK+SPSKL PYASKGREA+FNS RLSFFS+I EEGESISRETLKTYTCLSEAPQTSADDLL+LEEIE+N AKSL+ LHYG
Subjt: MGTSFRPNLKWAFQIQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDLLDLEEIEINSRAKSLNHLHYG
Query: IKNTRLSKVDDNFSSCTSLPTGKASPFGIL-----------------------------------------------------------ALEDGGDHNLN
IKNT SKV+DNFSSCTS P+GKASPFG+L ED GDHN+N
Subjt: IKNTRLSKVDDNFSSCTSLPTGKASPFGIL-----------------------------------------------------------ALEDGGDHNLN
Query: QKTDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEKFRNSAILSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRI
QKT D +DIIVYSGKRA RRSVKKRA+D+ADKV SQP+ATRAAKEK +SAI+SRK+ASNSRKRRLI+ARNEAEMSTGVKVVANLERI+ETLEKESGR+
Subjt: QKTDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEKFRNSAILSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRI
Query: ASMSCWADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSR
SMSCWA+AA VDIKDL+KQLQFGWFCQDELLRSTNSL++FLA+KYRCSGLPMEDLVQAG+LGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARN+R
Subjt: ASMSCWADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSR
Query: GIQIPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLE
GIQIPWSLTKAINQIQKARK LNNGGRRYSDDDIAKATGLPL+KVRVASNCLKVVGS+DQKMGDGLNMKYMEF AD SIQSPEETVK+KLMKKDIFN+LE
Subjt: GIQIPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLE
Query: GLESRERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLSHYLD
GLESRERQVL LRYGL+DFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKL+ +ETVRN SHYLD
Subjt: GLESRERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLSHYLD
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A1S3BBM8 RNA polymerase sigma factor sigC | 7.9e-243 | 79.43 | Show/hide |
Query: MGTSFRPNLKWAFQIQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDLLDLEEIEINSRAKSLNHLHYG
MGT FRPNLKW FQIQTHS K+SPSKLSPYASKGREA+FNS RLSFFS+ICEEGESI RETLKTYTCLSEAPQTS DDLL+LEEIE+NS AKSL+ LHYG
Subjt: MGTSFRPNLKWAFQIQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDLLDLEEIEINSRAKSLNHLHYG
Query: IKNTRLSKVDDNFSSCTSLPTGKASPFGI-------------------------------------------------------LALEDGGDHNLNQKTD
IK+TR SKV+DNFSS TS+PTGKASPFGI L +EDG DHN+NQKT+
Subjt: IKNTRLSKVDDNFSSCTSLPTGKASPFGI-------------------------------------------------------LALEDGGDHNLNQKTD
Query: DHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEKFRNSAILSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMS
D D+ VYSGKRAGRRSVKKRA+DNADKVAS+P+ATRA KEK +S I SRK++SNS KRRL+VARNEAEMSTG+KVVANLERI+ETLEKESGRIASMS
Subjt: DHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEKFRNSAILSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMS
Query: CWADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQI
CWA+AA VDIKDLQKQLQFGWFC+DELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQI
Subjt: CWADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQI
Query: PWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEGLES
PWSLTKAINQIQKARK LN GGRRYSDDDIA+ATGLPL+KVRVASNCLKVVGS+DQKMGDGLNMKYMEF ADTSIQSPEETVKRKLMKKDIFN+L+GLES
Subjt: PWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEGLES
Query: RERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLSHYLD
RERQVL LRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLK++ETV+NLSHYLD
Subjt: RERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLSHYLD
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| A0A6J1BQJ7 RNA polymerase sigma factor sigC isoform X2 | 4.6e-243 | 86.71 | Show/hide |
Query: MGTSFRPNLKWAFQIQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDLLDLEEIEINSRAKSLNHLHYG
MGTSFRPNLKWAFQ+QTHSR SPSK P+ASKGREASFNSARLSFFSAICEEGES SRETLKTYTCLSEAPQTSADDLLDL+EIEINSRA+ L+H HYG
Subjt: MGTSFRPNLKWAFQIQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDLLDLEEIEINSRAKSLNHLHYG
Query: IKNTRLSKVDDNFSSCTSLPTGKASPFGILALEDGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEKFRNSAILSRKRA
IKNT SK++DNFSSCTSLPTGKAS F L +EDGG HN+NQKTD +DIIVYSGK+ GRRS+K+RA D ADKVASQP AT AAKEKF NSA RKR
Subjt: IKNTRLSKVDDNFSSCTSLPTGKASPFGILALEDGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEKFRNSAILSRKRA
Query: SNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQA
NSR+RRL+VARNEAEMSTGVKVVANLERI+ETLEKES + ASMSCWADAA +DIKDL KQLQFGWFCQ+ELLRSTNSLV+FLAKKYRC+GLPMEDLVQA
Subjt: SNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQA
Query: GALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLD
GA+GVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARK LNNG RRYSDDDIAKATGLPL+KVRVASNCLKVVGS+D
Subjt: GALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLD
Query: QKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLS
QKMGDGLNMKYMEF ADTSIQSPEETVK+KLMKKDIFNLLEGLE RERQVLALRYGL DFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLK++ET NL
Subjt: QKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLS
Query: HYLD
HYLD
Subjt: HYLD
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| A0A6J1BRC1 RNA polymerase sigma factor sigC isoform X1 | 1.3e-237 | 78.07 | Show/hide |
Query: MGTSFRPNLKWAFQIQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDLLDLEEIEINSRAKSLNHLHYG
MGTSFRPNLKWAFQ+QTHSR SPSK P+ASKGREASFNSARLSFFSAICEEGES SRETLKTYTCLSEAPQTSADDLLDL+EIEINSRA+ L+H HYG
Subjt: MGTSFRPNLKWAFQIQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDLLDLEEIEINSRAKSLNHLHYG
Query: IKNTRLSKVDDNFSSCTSLPTGKASPFGI---------------------------------------------------------LALEDGGDHNLNQK
IKNT SK++DNFSSCTSLPTGKAS FG+ L +EDGG HN+NQK
Subjt: IKNTRLSKVDDNFSSCTSLPTGKASPFGI---------------------------------------------------------LALEDGGDHNLNQK
Query: TDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEKFRNSAILSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIAS
TD +DIIVYSGK+ GRRS+K+RA D ADKVASQP AT AAKEKF NSA RKR NSR+RRL+VARNEAEMSTGVKVVANLERI+ETLEKES + AS
Subjt: TDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEKFRNSAILSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIAS
Query: MSCWADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
MSCWADAA +DIKDL KQLQFGWFCQ+ELLRSTNSLV+FLAKKYRC+GLPMEDLVQAGA+GVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Subjt: MSCWADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGI
Query: QIPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEGL
QIPWSLTKAINQIQKARK LNNG RRYSDDDIAKATGLPL+KVRVASNCLKVVGS+DQKMGDGLNMKYMEF ADTSIQSPEETVK+KLMKKDIFNLLEGL
Subjt: QIPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEGL
Query: ESRERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLSHYLD
E RERQVLALRYGL DFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLK++ET NL HYLD
Subjt: ESRERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLSHYLD
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| A0A6J1KA34 RNA polymerase sigma factor sigC-like isoform X2 | 1.4e-236 | 78.21 | Show/hide |
Query: MGTSFRPNLKWAFQIQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDLLDLEEIEINSRAKSLNHLHYG
MGTSFRPNLKWAFQIQTHSR++SPSKLSPYASKGREASFNS RLSFFS+ CEEGE+ISRE LKTYTCLSEAPQT AD LLDLEE EINS AKSL+HLHYG
Subjt: MGTSFRPNLKWAFQIQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDLLDLEEIEINSRAKSLNHLHYG
Query: IKNTRLSKVDDNFSSCTSLPTGKASPF-----------------GILALED---------------------------------------GGDHNLNQKT
KN+ SKV+DNF SCTSLPTG+ASPF G+L+LE GGDHN+NQKT
Subjt: IKNTRLSKVDDNFSSCTSLPTGKASPF-----------------GILALED---------------------------------------GGDHNLNQKT
Query: DDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEKFRNSAILSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASM
DD +IIVYSGKRAGRRSVK+RA+DNADKVAS+P+ATRAAKEKFR+ SRK+ASNS+KRR IVARNEAEMSTGVKVVANLERI+ETLEKESGR ASM
Subjt: DDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEKFRNSAILSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASM
Query: SCWADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
SCWADA+ +DIKDLQKQLQFGWFCQDELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGA+GVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVAR+SRGIQ
Subjt: SCWADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQ
Query: IPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEGLE
IPWSLTKAINQIQKARK LNN GRRYSDDD+AKATGLPL+KVRVASNCLKVVGS+DQK+GDGLNMKYME ADTSI+SPE+TVKR+LMKKDIFNLLE LE
Subjt: IPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEGLE
Query: SRERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLSHYLD
SRERQVL LRYGLMD QPKSLEEIGKLL VSKEWVRKIE+KA TKLK++ETVRNLSHYLD
Subjt: SRERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLSHYLD
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| A0A6J1KCF5 RNA polymerase sigma factor sigC-like isoform X1 | 9.4e-236 | 77.94 | Show/hide |
Query: MGTSFRPNLKWAFQIQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDLLDLE--EIEINSRAKSLNHLH
MGTSFRPNLKWAFQIQTHSR++SPSKLSPYASKGREASFNS RLSFFS+ CEEGE+ISRE LKTYTCLSEAPQT AD LLDLE E+EINS AKSL+HLH
Subjt: MGTSFRPNLKWAFQIQTHSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDLLDLE--EIEINSRAKSLNHLH
Query: YGIKNTRLSKVDDNFSSCTSLPTGKASPF-----------------GILALED---------------------------------------GGDHNLNQ
YG KN+ SKV+DNF SCTSLPTG+ASPF G+L+LE GGDHN+NQ
Subjt: YGIKNTRLSKVDDNFSSCTSLPTGKASPF-----------------GILALED---------------------------------------GGDHNLNQ
Query: KTDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEKFRNSAILSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIA
KTDD +IIVYSGKRAGRRSVK+RA+DNADKVAS+P+ATRAAKEKFR+ SRK+ASNS+KRR IVARNEAEMSTGVKVVANLERI+ETLEKESGR A
Subjt: KTDDHKEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEKFRNSAILSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIA
Query: SMSCWADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRG
SMSCWADA+ +DIKDLQKQLQFGWFCQDELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGA+GVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVAR+SRG
Subjt: SMSCWADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRG
Query: IQIPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEG
IQIPWSLTKAINQIQKARK LNN GRRYSDDD+AKATGLPL+KVRVASNCLKVVGS+DQK+GDGLNMKYME ADTSI+SPE+TVKR+LMKKDIFNLLE
Subjt: IQIPWSLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEG
Query: LESRERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLSHYLD
LESRERQVL LRYGLMD QPKSLEEIGKLL VSKEWVRKIE+KA TKLK++ETVRNLSHYLD
Subjt: LESRERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLSHYLD
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| SwissProt top hits | e value | %identity | Alignment |
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| O22056 RNA polymerase sigma factor sigB | 6.6e-53 | 28.63 | Show/hide |
Query: THSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKT---YTCLSEAPQT------SADDLLDLEEIEINSRAKSLNHLHYGIKNTRLS
T++R PS + Y + ++ + A E +++R +K T + T +AD ++ RA L HL
Subjt: THSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKT---YTCLSEAPQT------SADDLLDLEEIEINSRAKSLNHLHYGIKNTRLS
Query: KVDDNFSSCTSLPTGKASPFGILALEDGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRALDN------ADKVASQPIATRAAKEKFRNSAILSRKRAS
V DN + ++ I LE + + + V S ++ R++ + + L+ + K S P R ++ ++ L R +
Subjt: KVDDNFSSCTSLPTGKASPFGILALEDGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRALDN------ADKVASQPIATRAAKEKFRNSAILSRKRAS
Query: NSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAG
S +L+ R E E+S G++ + LER++ L + SGR + + WA AA VD K L++++ G C+D++++S LV+ +AK Y+ +G+ ++DLVQ G
Subjt: NSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAG
Query: ALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTL-NNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLD
G+++G E+FD +GF+FSTY +WI++++ + ++ SR I++P+ + +A ++++ARK L + G+ +++IA+ATGL + ++ K SLD
Subjt: ALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTL-NNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLD
Query: QKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLS
QK+G N+K E AD + E+ + ++ M++D+ +L+ L +RE+QV+ R+G+ D + K+L+EIG+++ VS+E VR+IE A KLK+K+ +L
Subjt: QKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLS
Query: HYL
YL
Subjt: HYL
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| O24621 RNA polymerase sigma factor sigC | 1.5e-102 | 44.22 | Show/hide |
Query: SARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDLL-----DLEEIEINSRAKSLNH---LHYGIKNTRLSKVDDNFSSCTS--------LPTGK-
+ R SF S++ EE ++LK C S +P T+ +++ E I + S +S + L Y + L +++ F + S L GK
Subjt: SARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDLL-----DLEEIEINSRAKSLNH---LHYGIKNTRLSKVDDNFSSCTS--------LPTGK-
Query: -ASPFGILALEDGGDHNLNQKTDDHKEDIIVYSGKR---AGRRSVKKRA------LDNADKVASQPIATRAAKEKFRNSAILSRKRASNSRKRRLIVARN
A+ L ++ D E + ++ + RR VKK+A +N D+ +S PI R + N + +R RK+R ++RN
Subjt: -ASPFGILALEDGGDHNLNQKTDDHKEDIIVYSGKR---AGRRSVKKRA------LDNADKVASQPIATRAAKEKFRNSAILSRKRASNSRKRRLIVARN
Query: EAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFD
E EMSTGVK+VA++ERI+ LE+ESG++AS+SCWA AA ++ K L + L +GW+C+DEL++ST SLV+FLA+ YR G+ EDL+QAG +GVLQG ERFD
Subjt: EAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFD
Query: PKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTL--NNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLNMKY
RG++FSTY+QYWIRKSMS +V+R++RG+ IP S+ + IN IQKARKTL ++G + +D++IAK TG + K+R A+ CLKVVGS+D+K+GD K+
Subjt: PKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTL--NNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLNMKY
Query: MEFAADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLSHYLD
+EF DT+++SPEE V R+ ++DI +LLEGLE RE+QV+ LRYGL D++PKSLEEIGKLL VSKEW+RKIE++AM KL+D+ +L +YL+
Subjt: MEFAADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLSHYLD
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| P26683 RNA polymerase sigma factor SigA | 1.9e-44 | 32.63 | Show/hide |
Query: KVASQPIATRAAKEKFRNSAILSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAARVDIKDLQKQLQFGWFCQDELL
K A T++ K+ + +I R + RL+ A E E++ + + LER++E L ++ R S WA+A ++ + + +L G +D+++
Subjt: KVASQPIATRAAKEKFRNSAILSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAARVDIKDLQKQLQFGWFCQDELL
Query: RSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNNG-GRRYSD
+S LVV +AKKY GL +DL+Q G+LG+++ E+FD ++G++FSTY +WIR++++R +A SR I++P L + I++I+K K L+ GR+ ++
Subjt: RSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNNG-GRRYSD
Query: DDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVLALRYGLMDFQPKSLEEIGKLL
++IA + + K+R + ++ SL+ +G + + +F ++ ++PE+ V + L+++D+ +L+ L RER VL LRYGL D + K+LEEIG++
Subjt: DDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVLALRYGLMDFQPKSLEEIGKLL
Query: HVSKEWVRKIEKKAMTKLKDKETVRNLSHYL
+V++E +R+IE KA+ KL+ L Y+
Subjt: HVSKEWVRKIEKKAMTKLKDKETVRNLSHYL
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| P38023 RNA polymerase sigma factor SigA1 | 1.5e-44 | 33.33 | Show/hide |
Query: ALDNADKVASQPIATRAAKEKFRNSAILS--RKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAARVDIKDLQKQLQFG
A+D+ D V A AK K R + R + RL+ A E E++ + + LERI++ L ++ R+ S + WA A + + +++L G
Subjt: ALDNADKVASQPIATRAAKEKFRNSAILS--RKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAARVDIKDLQKQLQFG
Query: WFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNN
+D++++S LVV +AKKY GL +DL+Q G+LG+++ E+FD ++G++FSTY +WIR++++R +A SR I++P L + I++I+K K L+
Subjt: WFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNN
Query: G-GRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVLALRYGLMDFQPKS
GR+ ++++IA + + K+R + ++ SL+ +G + + +F + ++PE+ V + L+++D+ +L L RER VL LRYGL D + K+
Subjt: G-GRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVLALRYGLMDFQPKS
Query: LEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLSHYL
LEEIG+L +V++E +R+IE KA+ KL+ L Y+
Subjt: LEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLSHYL
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| Q9LD95 RNA polymerase sigma factor sigF, chloroplastic | 5.8e-41 | 29.81 | Show/hide |
Query: IVYSGKRAGRRSVKKRA--LDNADKVASQPIATRAAKEKFRNSA---ILSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSC
IV S ++ RR+ +RA ++ D P T +AK+K++ A + ++L+ A+ EAE+ + ++ + LE++K LE ++G ++
Subjt: IVYSGKRAGRRSVKKRA--LDNADKVASQPIATRAAKEKFRNSA---ILSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSC
Query: WADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIP
WA+A + L+ + G +++L+ + LVV +AK+Y+ GL +DL+Q G++G+++ VE+F P+ G RF+TY +WIR+S+ + + +NSR I++P
Subjt: WADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIP
Query: WSLTKAINQIQKARKT-LNNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEGLES
++ + ++ +ARKT + G R S +++A G+ K+ + S+ Q + + + E D+ I++P +V ++LM+ + NLL L
Subjt: WSLTKAINQIQKARKT-LNNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEGLES
Query: RERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLSHYLD
+ER+++ LR+G+ + +SL EIG++ +SKE VR++E +A+ +LK L Y D
Subjt: RERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLSHYLD
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT1G08540.1 RNApolymerase sigma subunit 2 | 4.7e-54 | 28.63 | Show/hide |
Query: THSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKT---YTCLSEAPQT------SADDLLDLEEIEINSRAKSLNHLHYGIKNTRLS
T++R PS + Y + ++ + A E +++R +K T + T +AD ++ RA L HL
Subjt: THSRKSSPSKLSPYASKGREASFNSARLSFFSAICEEGESISRETLKT---YTCLSEAPQT------SADDLLDLEEIEINSRAKSLNHLHYGIKNTRLS
Query: KVDDNFSSCTSLPTGKASPFGILALEDGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRALDN------ADKVASQPIATRAAKEKFRNSAILSRKRAS
V DN + ++ I LE + + + V S ++ R++ + + L+ + K S P R ++ ++ L R +
Subjt: KVDDNFSSCTSLPTGKASPFGILALEDGGDHNLNQKTDDHKEDIIVYSGKRAGRRSVKKRALDN------ADKVASQPIATRAAKEKFRNSAILSRKRAS
Query: NSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAG
S +L+ R E E+S G++ + LER++ L + SGR + + WA AA VD K L++++ G C+D++++S LV+ +AK Y+ +G+ ++DLVQ G
Subjt: NSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAG
Query: ALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTL-NNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLD
G+++G E+FD +GF+FSTY +WI++++ + ++ SR I++P+ + +A ++++ARK L + G+ +++IA+ATGL + ++ K SLD
Subjt: ALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTL-NNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLD
Query: QKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLS
QK+G N+K E AD + E+ + ++ M++D+ +L+ L +RE+QV+ R+G+ D + K+L+EIG+++ VS+E VR+IE A KLK+K+ +L
Subjt: QKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLS
Query: HYL
YL
Subjt: HYL
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| AT1G64860.1 sigma factor A | 2.0e-28 | 28.21 | Show/hide |
Query: KEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEKFRNSAILSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCW
K +I SG A +R + + N V + + + + ++S S+ + V R ++ +G+++ + R+K+ L G S
Subjt: KEDIIVYSGKRAGRRSVKKRALDNADKVASQPIATRAAKEKFRNSAILSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSCW
Query: ADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPW
A + ++ +LQ L +++L S LV+ +A++Y G M DLVQ G +G+L+G+E+FD +GFR STY+ +WIR+ +SR + NSR +++P
Subjt: ADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPW
Query: SLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLN----MKYMEFAADTSIQ-SPEETVKRKLMKKDIFNLLEG
L + + I+ A+ L G S D IA++ + KVR A+ + V SLD+ LN + + ADT ++ +P +K+++ L+
Subjt: SLTKAINQIQKARKTLNNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLN----MKYMEFAADTSIQ-SPEETVKRKLMKKDIFNLLEG
Query: -LESRERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNL
L RE++++ L YGL D + + E+I K + +S+E VR++ A+ KLK R +
Subjt: -LESRERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNL
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| AT2G36990.1 RNApolymerase sigma-subunit F | 4.1e-42 | 29.81 | Show/hide |
Query: IVYSGKRAGRRSVKKRA--LDNADKVASQPIATRAAKEKFRNSA---ILSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSC
IV S ++ RR+ +RA ++ D P T +AK+K++ A + ++L+ A+ EAE+ + ++ + LE++K LE ++G ++
Subjt: IVYSGKRAGRRSVKKRA--LDNADKVASQPIATRAAKEKFRNSA---ILSRKRASNSRKRRLIVARNEAEMSTGVKVVANLERIKETLEKESGRIASMSC
Query: WADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIP
WA+A + L+ + G +++L+ + LVV +AK+Y+ GL +DL+Q G++G+++ VE+F P+ G RF+TY +WIR+S+ + + +NSR I++P
Subjt: WADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIP
Query: WSLTKAINQIQKARKT-LNNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEGLES
++ + ++ +ARKT + G R S +++A G+ K+ + S+ Q + + + E D+ I++P +V ++LM+ + NLL L
Subjt: WSLTKAINQIQKARKT-LNNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEGLES
Query: RERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLSHYLD
+ER+++ LR+G+ + +SL EIG++ +SKE VR++E +A+ +LK L Y D
Subjt: RERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLSHYLD
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| AT3G53920.1 RNApolymerase sigma-subunit C | 1.1e-103 | 44.22 | Show/hide |
Query: SARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDLL-----DLEEIEINSRAKSLNH---LHYGIKNTRLSKVDDNFSSCTS--------LPTGK-
+ R SF S++ EE ++LK C S +P T+ +++ E I + S +S + L Y + L +++ F + S L GK
Subjt: SARLSFFSAICEEGESISRETLKTYTCLSEAPQTSADDLL-----DLEEIEINSRAKSLNH---LHYGIKNTRLSKVDDNFSSCTS--------LPTGK-
Query: -ASPFGILALEDGGDHNLNQKTDDHKEDIIVYSGKR---AGRRSVKKRA------LDNADKVASQPIATRAAKEKFRNSAILSRKRASNSRKRRLIVARN
A+ L ++ D E + ++ + RR VKK+A +N D+ +S PI R + N + +R RK+R ++RN
Subjt: -ASPFGILALEDGGDHNLNQKTDDHKEDIIVYSGKR---AGRRSVKKRA------LDNADKVASQPIATRAAKEKFRNSAILSRKRASNSRKRRLIVARN
Query: EAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFD
E EMSTGVK+VA++ERI+ LE+ESG++AS+SCWA AA ++ K L + L +GW+C+DEL++ST SLV+FLA+ YR G+ EDL+QAG +GVLQG ERFD
Subjt: EAEMSTGVKVVANLERIKETLEKESGRIASMSCWADAARVDIKDLQKQLQFGWFCQDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFD
Query: PKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTL--NNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLNMKY
RG++FSTY+QYWIRKSMS +V+R++RG+ IP S+ + IN IQKARKTL ++G + +D++IAK TG + K+R A+ CLKVVGS+D+K+GD K+
Subjt: PKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTL--NNGGRRYSDDDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLNMKY
Query: MEFAADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLSHYLD
+EF DT+++SPEE V R+ ++DI +LLEGLE RE+QV+ LRYGL D++PKSLEEIGKLL VSKEW+RKIE++AM KL+D+ +L +YL+
Subjt: MEFAADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVLALRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLSHYLD
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| AT5G13730.1 sigma factor 4 | 5.8e-36 | 37.45 | Show/hide |
Query: QDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNNGGR
++++ R LVV +A Y+ GL ++DL+Q G++G+L+G ERFDP RG++ STY+ +WI++++ R +A SR +++P S+ + ++ +A L R
Subjt: QDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRFSTYIQYWIRKSMSRVVARNSRGIQIPWSLTKAINQIQKARKTLNNGGR
Query: RY-SDDDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVLALRYGLMDFQPKSLEE
R S ++IA+ L +S VR+A + SLD+ M E PEE VKR+ MK +I LL L +RE +VL L +GL P S EE
Subjt: RY-SDDDIAKATGLPLSKVRVASNCLKVVGSLDQKMGDGLNMKYMEFAADTSIQSPEETVKRKLMKKDIFNLLEGLESRERQVLALRYGLMDFQPKSLEE
Query: IGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLSHY
IGK L +S+E VR+I A+ KL++ V +L Y
Subjt: IGKLLHVSKEWVRKIEKKAMTKLKDKETVRNLSHY
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