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Lag0005041 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005041
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr6:9873343..9873798
RNA-Seq ExpressionLag0005041
SyntenyLag0005041
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.2e-1034.65Show/hide
Query:  RWKPPDPNRWKLNTDASWSEISKCDGLGWIIRDSTRPLLGAGCNQVKRCGAIKYLEVEPILEGLLA----HARWIDNKGKSDIIVVESDSNDIIGAINDD
        +WKPP  N WKLNT+A+W   +   G+GWI+RD    ++ A C  ++    I YLEV  I EGL A    H R I          +ESDS + I  ++  
Subjt:  RWKPPDPNRWKLNTDASWSEISKCDGLGWIIRDSTRPLLGAGCNQVKRCGAIKYLEVEPILEGLLA----HARWIDNKGKSDIIVVESDSNDIIGAINDD

Query:  FQDRPELSLIFDEIKEVADLLNDISFQ
         QD+ E+  + +EI ++   +  +S +
Subjt:  FQDRPELSLIFDEIKEVADLLNDISFQ

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]1.5e-1047.14Show/hide
Query:  SSHLRWKPPDPNRWKLNTDASWSEISKCDGLGWIIRDSTRPLLGAGCNQVKRCGAIKYLEVEPILEGLLA
        ++  RWKPP  N WKLNTDA+W   +  DG+GWI+RD    ++  GC  ++    I YLEV  I EGL A
Subjt:  SSHLRWKPPDPNRWKLNTDASWSEISKCDGLGWIIRDSTRPLLGAGCNQVKRCGAIKYLEVEPILEGLLA

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]1.5e-1047.14Show/hide
Query:  SSHLRWKPPDPNRWKLNTDASWSEISKCDGLGWIIRDSTRPLLGAGCNQVKRCGAIKYLEVEPILEGLLA
        ++  RWKPP  N WKLNTDA+W   +  DG+GWI+RD    ++  GC  ++    I YLEV  I EGL A
Subjt:  SSHLRWKPPDPNRWKLNTDASWSEISKCDGLGWIIRDSTRPLLGAGCNQVKRCGAIKYLEVEPILEGLLA

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]4.0e-1132.19Show/hide
Query:  IDESKVCDRTRLKSNFVENQSSHLRWKPPDPNRWKLNTDASWSEISKCDGLGWIIRDSTRPLLGAGCNQVKRCGAIKYLEVEPILEGLLAHARWIDNKGK
        + ES     T L S   +  ++ L+W+PP  + W LN DASWS+ +   G+GWIIR     ++ AG   V+ C  +K LE   ILEGL    R + N G 
Subjt:  IDESKVCDRTRLKSNFVENQSSHLRWKPPDPNRWKLNTDASWSEISKCDGLGWIIRDSTRPLLGAGCNQVKRCGAIKYLEVEPILEGLLAHARWIDNKGK

Query:  SDIIVVESDSNDIIGAINDDFQDRPELSLIFDEIKEVADLLNDISF
           + +E+DS ++   +N   +D  +   + +EI  + D    ++F
Subjt:  SDIIVVESDSNDIIGAINDDFQDRPELSLIFDEIKEVADLLNDISF

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.6e-1237.01Show/hide
Query:  RWKPPDPNRWKLNTDASWSEISKCDGLGWIIRDSTRPLLGAGCNQVKRCGAIKYLEVEPILEGLLA----HARWIDNKGKSDIIVVESDSNDIIGAINDD
        RWKPP  N WKLNTDA+W   +   G+GWI+RD    ++ A C  ++    I YLEV  I EGL A    H R I  +     I +ESDS + I  ++  
Subjt:  RWKPPDPNRWKLNTDASWSEISKCDGLGWIIRDSTRPLLGAGCNQVKRCGAIKYLEVEPILEGLLA----HARWIDNKGKSDIIVVESDSNDIIGAINDD

Query:  FQDRPELSLIFDEIKEVADLLNDISFQ
         QD+ E+  + +EI ++ + +  +S +
Subjt:  FQDRPELSLIFDEIKEVADLLNDISFQ

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134125.7e-1134.65Show/hide
Query:  RWKPPDPNRWKLNTDASWSEISKCDGLGWIIRDSTRPLLGAGCNQVKRCGAIKYLEVEPILEGLLA----HARWIDNKGKSDIIVVESDSNDIIGAINDD
        +WKPP  N WKLNT+A+W   +   G+GWI+RD    ++ A C  ++    I YLEV  I EGL A    H R I          +ESDS + I  ++  
Subjt:  RWKPPDPNRWKLNTDASWSEISKCDGLGWIIRDSTRPLLGAGCNQVKRCGAIKYLEVEPILEGLLA----HARWIDNKGKSDIIVVESDSNDIIGAINDD

Query:  FQDRPELSLIFDEIKEVADLLNDISFQ
         QD+ E+  + +EI ++   +  +S +
Subjt:  FQDRPELSLIFDEIKEVADLLNDISFQ

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X17.4e-1147.14Show/hide
Query:  SSHLRWKPPDPNRWKLNTDASWSEISKCDGLGWIIRDSTRPLLGAGCNQVKRCGAIKYLEVEPILEGLLA
        ++  RWKPP  N WKLNTDA+W   +  DG+GWI+RD    ++  GC  ++    I YLEV  I EGL A
Subjt:  SSHLRWKPPDPNRWKLNTDASWSEISKCDGLGWIIRDSTRPLLGAGCNQVKRCGAIKYLEVEPILEGLLA

A0A6J1DNV9 uncharacterized protein LOC1110224031.9e-1132.19Show/hide
Query:  IDESKVCDRTRLKSNFVENQSSHLRWKPPDPNRWKLNTDASWSEISKCDGLGWIIRDSTRPLLGAGCNQVKRCGAIKYLEVEPILEGLLAHARWIDNKGK
        + ES     T L S   +  ++ L+W+PP  + W LN DASWS+ +   G+GWIIR     ++ AG   V+ C  +K LE   ILEGL    R + N G 
Subjt:  IDESKVCDRTRLKSNFVENQSSHLRWKPPDPNRWKLNTDASWSEISKCDGLGWIIRDSTRPLLGAGCNQVKRCGAIKYLEVEPILEGLLAHARWIDNKGK

Query:  SDIIVVESDSNDIIGAINDDFQDRPELSLIFDEIKEVADLLNDISF
           + +E+DS ++   +N   +D  +   + +EI  + D    ++F
Subjt:  SDIIVVESDSNDIIGAINDDFQDRPELSLIFDEIKEVADLLNDISF

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X27.4e-1147.14Show/hide
Query:  SSHLRWKPPDPNRWKLNTDASWSEISKCDGLGWIIRDSTRPLLGAGCNQVKRCGAIKYLEVEPILEGLLA
        ++  RWKPP  N WKLNTDA+W   +  DG+GWI+RD    ++  GC  ++    I YLEV  I EGL A
Subjt:  SSHLRWKPPDPNRWKLNTDASWSEISKCDGLGWIIRDSTRPLLGAGCNQVKRCGAIKYLEVEPILEGLLA

A0A6J1DSV1 uncharacterized protein LOC1110236087.9e-1337.01Show/hide
Query:  RWKPPDPNRWKLNTDASWSEISKCDGLGWIIRDSTRPLLGAGCNQVKRCGAIKYLEVEPILEGLLA----HARWIDNKGKSDIIVVESDSNDIIGAINDD
        RWKPP  N WKLNTDA+W   +   G+GWI+RD    ++ A C  ++    I YLEV  I EGL A    H R I  +     I +ESDS + I  ++  
Subjt:  RWKPPDPNRWKLNTDASWSEISKCDGLGWIIRDSTRPLLGAGCNQVKRCGAIKYLEVEPILEGLLA----HARWIDNKGKSDIIVVESDSNDIIGAINDD

Query:  FQDRPELSLIFDEIKEVADLLNDISFQ
         QD+ E+  + +EI ++ + +  +S +
Subjt:  FQDRPELSLIFDEIKEVADLLNDISFQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.8e-0928.35Show/hide
Query:  LRWKPPDPNRW-KLNTDASWSEISKCDGLGWIIRDSTRPLLGAGCNQVKRCGAIKYLEVEPILEGLLAHARWIDNKGKSDIIVVESDSNDIIGAIN-DDF
        ++WK P P +W K NTDA+W   +   G+GWI+R+ +  +L  G   + R   +   E+E +   +L  +R+   +     I+ ESD+  ++  +N DDF
Subjt:  LRWKPPDPNRW-KLNTDASWSEISKCDGLGWIIRDSTRPLLGAGCNQVKRCGAIKYLEVEPILEGLLAHARWIDNKGKSDIIVVESDSNDIIGAIN-DDF

Query:  QDRPELSLIFDEIKEVADLLNDISFQF
           P L    ++I+++     ++ F+F
Subjt:  QDRPELSLIFDEIKEVADLLNDISFQF

AT4G29090.1 Ribonuclease H-like superfamily protein2.1e-1029.1Show/hide
Query:  NQSSHLRWKPPDPNRW-KLNTDASWSEISKCDGLGWIIRDSTRPLLGAGCNQVKRCGAIKYLEVEPILEGLLAHARWID---NKGKSDIIVVESDSNDII
        N+SS  RW+PP P++W K NTDA+W+  ++  G+GW++R+           +VK  GA    +++ +LE  L   RW     ++ + + ++ ESDS  +I
Subjt:  NQSSHLRWKPPDPNRW-KLNTDASWSEISKCDGLGWIIRDSTRPLLGAGCNQVKRCGAIKYLEVEPILEGLLAHARWID---NKGKSDIIVVESDSNDII

Query:  GAINDDFQDRPELSLIFDEIKEVADLLNDISFQF
          +N+D +  P L     +++ +     ++ F F
Subjt:  GAINDDFQDRPELSLIFDEIKEVADLLNDISFQF

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.1e-0625.78Show/hide
Query:  SSHLRWKPPDPNRWKLNTDASWSEISKCDGLGWIIRDSTRPLLGAGCNQVKRCGAIKYLEVEPILEGLLAHARWIDNKGKSDIIVVESDSNDIIGAINDD
        S + +W PP  ++ K N DAS  E +   GLGWI+R+S   ++  G  + +     +  E   ++  + A   +   K     ++ E D+  I   IN  
Subjt:  SSHLRWKPPDPNRWKLNTDASWSEISKCDGLGWIIRDSTRPLLGAGCNQVKRCGAIKYLEVEPILEGLLAHARWIDNKGKSDIIVVESDSNDIIGAINDD

Query:  FQDRPELSLIFDEIKEVADLLNDISFQF
            P L    D I+        I F F
Subjt:  FQDRPELSLIFDEIKEVADLLNDISFQF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAGATGAATCAAAAGTTTGCGATAGGACTCGTCTGAAGTCCAATTTTGTGGAGAACCAGTCGAGTCACCTTCGGTGGAAGCCGCCTGATCCAAACCGTTGGAAGCT
CAACACGGATGCGTCCTGGAGTGAAATATCCAAGTGTGACGGGTTGGGTTGGATCATTCGTGACTCAACGAGGCCTTTGTTAGGAGCAGGATGCAATCAGGTGAAGAGAT
GTGGAGCGATAAAATATTTAGAAGTTGAACCCATTCTTGAAGGGCTATTAGCGCATGCAAGATGGATTGACAACAAAGGGAAAAGTGATATAATTGTTGTTGAATCAGAT
TCCAATGATATAATTGGAGCTATCAATGACGACTTTCAAGACCGACCAGAACTCTCCCTGATCTTCGATGAAATCAAGGAGGTGGCTGATCTTCTTAATGATATTTCTTT
TCAATTTTTTTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATAGATGAATCAAAAGTTTGCGATAGGACTCGTCTGAAGTCCAATTTTGTGGAGAACCAGTCGAGTCACCTTCGGTGGAAGCCGCCTGATCCAAACCGTTGGAAGCT
CAACACGGATGCGTCCTGGAGTGAAATATCCAAGTGTGACGGGTTGGGTTGGATCATTCGTGACTCAACGAGGCCTTTGTTAGGAGCAGGATGCAATCAGGTGAAGAGAT
GTGGAGCGATAAAATATTTAGAAGTTGAACCCATTCTTGAAGGGCTATTAGCGCATGCAAGATGGATTGACAACAAAGGGAAAAGTGATATAATTGTTGTTGAATCAGAT
TCCAATGATATAATTGGAGCTATCAATGACGACTTTCAAGACCGACCAGAACTCTCCCTGATCTTCGATGAAATCAAGGAGGTGGCTGATCTTCTTAATGATATTTCTTT
TCAATTTTTTTTTTAA
Protein sequenceShow/hide protein sequence
MIDESKVCDRTRLKSNFVENQSSHLRWKPPDPNRWKLNTDASWSEISKCDGLGWIIRDSTRPLLGAGCNQVKRCGAIKYLEVEPILEGLLAHARWIDNKGKSDIIVVESD
SNDIIGAINDDFQDRPELSLIFDEIKEVADLLNDISFQFFF