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Lag0005045 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005045
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr6:9956268..9956660
RNA-Seq ExpressionLag0005045
SyntenyLag0005045
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7539157.1 Ribonuclease H domain [Arabidopsis suecica]6.7e-0733.33Show/hide
Query:  WVDVAWNKSSLNTSYGWYMWFPNSNTSEDGSRRGGNSLNSLHAEGNALIWGLECAENKGIREMWVKSDSLRLVNIVNDKECYHVDFEPIQDAIQMMYERF
        +VD +W +S   +   W+   PN  T + G+     SL SLH E  ALIW + C   +  RE+   +D   LV +V   + +        +AIQ   E F
Subjt:  WVDVAWNKSSLNTSYGWYMWFPNSNTSEDGSRRGGNSLNSLHAEGNALIWGLECAENKGIREMWVKSDSLRLVNIVNDKECYHVDFEPIQDAIQMMYERF

Query:  NSCNLSFVRREHNGKAHCLARSVASQSSI
        +  +LS V R  N KA  LAR+V +Q  +
Subjt:  NSCNLSFVRREHNGKAHCLARSVASQSSI

KAG7571790.1 Reverse transcriptase domain [Arabidopsis suecica]1.0e-0733.61Show/hide
Query:  VDVAWNKSSLNTSYGWYMWFPNSNTSEDGSRRGGNSLNSLHAEGNALIWGLECAENKGIREMWVKSDSLRLVNIVNDKECYHVDFEPIQDAIQMMYERFN
        +D +W +S   +  GW+  +PN    + G+     SL SLH E  ALIW + C   +  RE+   +D   LV +V+  + + V F    +AIQ   E F+
Subjt:  VDVAWNKSSLNTSYGWYMWFPNSNTSEDGSRRGGNSLNSLHAEGNALIWGLECAENKGIREMWVKSDSLRLVNIVNDKECYHVDFEPIQDAIQMMYERFN

Query:  SCNLSFVRREHNGKAHCLARSV
          +L  + R  N KA  LAR+V
Subjt:  SCNLSFVRREHNGKAHCLARSV

KAG7585995.1 Reverse transcriptase zinc-binding domain [Arabidopsis thaliana x Arabidopsis arenosa]5.2e-0732.52Show/hide
Query:  WVDVAWNKSSLNTSYGWYMWFPNSNTSEDGSRRGGNSLNSLHAEGNALIWGLECAENKGIREMWVKSDSLRLVNIVNDKECYHVDFEPIQDAIQMMYERF
        ++D +W ++   +  GW+  +PN    + G+     SL SLH E  ALIW + C   +  RE+   +D   LV +V+    +   F    +AIQ   E F
Subjt:  WVDVAWNKSSLNTSYGWYMWFPNSNTSEDGSRRGGNSLNSLHAEGNALIWGLECAENKGIREMWVKSDSLRLVNIVNDKECYHVDFEPIQDAIQMMYERF

Query:  NSCNLSFVRREHNGKAHCLARSV
        +  +LS + R  N KA  LAR+V
Subjt:  NSCNLSFVRREHNGKAHCLARSV

KAG7593976.1 Ribonuclease H domain [Arabidopsis thaliana x Arabidopsis arenosa]2.7e-0834.88Show/hide
Query:  WVDVAWNKSSLNTSYGWYMWFPNSNTSEDGSRRGGNSLNSLHAEGNALIWGLECAENKGIREMWVKSDSLRLVNIVNDKECYHVDFEPIQDAIQMMYERF
        +VD +W +S   +  GW+   PN  T + G+     SL SLH E  ALIW + C   +  RE+   +D   LV +V+  + +   F    +AIQ   E F
Subjt:  WVDVAWNKSSLNTSYGWYMWFPNSNTSEDGSRRGGNSLNSLHAEGNALIWGLECAENKGIREMWVKSDSLRLVNIVNDKECYHVDFEPIQDAIQMMYERF

Query:  NSCNLSFVRREHNGKAHCLARSVASQSSI
        +  +LS V R  N KA  LAR+V  Q  +
Subjt:  NSCNLSFVRREHNGKAHCLARSVASQSSI

XP_010451887.1 PREDICTED: uncharacterized protein LOC104734079 [Camelina sativa]8.0e-0833.06Show/hide
Query:  VDVAWNKSSLNTSYGWYMWFPNSNTSEDGSRRGGNSLNSLHAEGNALIWGLECAENKGIREMWVKSDSLRLVNIVNDKECYHVDFEPIQDAIQMMYERFN
        VD +W  +  N+  GW+     + T   G+R    S++ LH+E  AL+W +EC  ++GI     ++DS  L+++V D E +   F  + D  Q++   F 
Subjt:  VDVAWNKSSLNTSYGWYMWFPNSNTSEDGSRRGGNSLNSLHAEGNALIWGLECAENKGIREMWVKSDSLRLVNIVNDKECYHVDFEPIQDAIQMMYERFN

Query:  SCNLSFVRREHNGKAHCLARS
           LS + R  N KA CLA S
Subjt:  SCNLSFVRREHNGKAHCLARS

TrEMBL top hitse value%identityAlignment
A0A3P6FMN1 RNase H domain-containing protein1.5e-0428.91Show/hide
Query:  WVDVAWNKSSLNTSYGWYMWFPNSNTSEDGSRRGGNSLNSLHAEGNALIWGLECAENKGIREMWVKSDSLRLVNIVNDKECYHVDFEPIQDAIQMMYERF
        + D +W ++ + +  GW       +    G+R     L+ LH E  AL+W +EC +N    ++   +D  +LV +V++ E +      ++D I+ + E F
Subjt:  WVDVAWNKSSLNTSYGWYMWFPNSNTSEDGSRRGGNSLNSLHAEGNALIWGLECAENKGIREMWVKSDSLRLVNIVNDKECYHVDFEPIQDAIQMMYERF

Query:  NSCNLSFVRREHNGKAHCLARSVASQSS
            + +V R  N +A  LARSV  QSS
Subjt:  NSCNLSFVRREHNGKAHCLARSVASQSS

A0A6J0K787 uncharacterized protein LOC1088152783.6e-0631.5Show/hide
Query:  DVAWNKSSLNTSYGWYMWFPNSNTSEDGSRRGGNSLNSLHAEGNALIWGLECAENKGIREMWVKSDSLRLVNIVNDKECYHVDFEPIQDAIQMMYERFNS
        D AW+ SS+    GW+     ++  E GS       + L AE  A+   +  A+   + ++W ++DSL L   +N K  Y V+   +   I+++   FN 
Subjt:  DVAWNKSSLNTSYGWYMWFPNSNTSEDGSRRGGNSLNSLHAEGNALIWGLECAENKGIREMWVKSDSLRLVNIVNDKECYHVDFEPIQDAIQMMYERFNS

Query:  CNLSFVRREHNGKAHCLARSVASQSSI
          +SFV REHN  A  LA+S  S  S+
Subjt:  CNLSFVRREHNGKAHCLARSVASQSSI

A0A6J0LGZ0 uncharacterized protein LOC1088303986.8e-0525.6Show/hide
Query:  VDVAWNKSSLNTSYGWYMWFPNSNTSEDGSRRGGNSLNSLHAEGNALIWGLECAENKGIREMWVKSDSLRLVNIVNDKECYHVDFEPIQDAIQMMYERFN
        VD +W +       G ++   +      G+R    ++++LHAE   L W ++    +GIR +  ++D L+LV +V   + +    E ++D I ++ + F+
Subjt:  VDVAWNKSSLNTSYGWYMWFPNSNTSEDGSRRGGNSLNSLHAEGNALIWGLECAENKGIREMWVKSDSLRLVNIVNDKECYHVDFEPIQDAIQMMYERFN

Query:  SCNLSFVRREHNGKAHCLARSVASQ
        S ++S + R  N +A CLA++  ++
Subjt:  SCNLSFVRREHNGKAHCLARSVASQ

A0A6J0LSP7 uncharacterized protein LOC1088341726.8e-0527.34Show/hide
Query:  VDVAWNKSSLNTSYGWYMWFPNSNTSEDGSRRGGNSLNSLHAEGNALIWGLECAENKGIREMWVKSDSLRLVNIVNDKECYHVDFEPIQDAIQMMYERFN
        +D +W  +   +  GW +          G R    SL++LHAE   L+W   C  ++GI  +   +D   LV+I  +   +   F+   + +Q ++E F 
Subjt:  VDVAWNKSSLNTSYGWYMWFPNSNTSEDGSRRGGNSLNSLHAEGNALIWGLECAENKGIREMWVKSDSLRLVNIVNDKECYHVDFEPIQDAIQMMYERFN

Query:  SCNLSFVRREHNGKAHCLARSVASQSSI
          +LS + RE NG+A  LA+   ++  I
Subjt:  SCNLSFVRREHNGKAHCLARSVASQSSI

A0A6J0NWW0 uncharacterized protein LOC1088588532.3e-0529.41Show/hide
Query:  DVAWNKSSLNTSYGWYMWFPNSNTSEDGSRRGGNSLNSLHAEGNALIWGLECAENKGIREMWVKSDSLRLVNIVNDKECYHVDFEPIQDAIQMMYERFNS
        D +W K + +    W      + T+ +G +      ++L AEG A+   L  A + GI ++W++SD L L+N ++      +D   +   I+ +Y  F+ 
Subjt:  DVAWNKSSLNTSYGWYMWFPNSNTSEDGSRRGGNSLNSLHAEGNALIWGLECAENKGIREMWVKSDSLRLVNIVNDKECYHVDFEPIQDAIQMMYERFNS

Query:  CNLSFVRREHNGKAHCLAR
        C  SFV RE NG A  L++
Subjt:  CNLSFVRREHNGKAHCLAR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G47497.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.2e-0725.89Show/hide
Query:  GWYMWFPNSNTSEDGSRRGGNSLNSLHAEGNALIWGLECAENKGIREMWVKSDSLRLVNIVNDKECYHVDFEPIQDAIQMMYERFNSCNLSFVRREHNGK
        GW +   +      G   G ++ N+L +E  AL+  ++   + G R++W + D+  ++ I+N ++     F  I+D +Q   +RF  C  +++ R+ N  
Subjt:  GWYMWFPNSNTSEDGSRRGGNSLNSLHAEGNALIWGLECAENKGIREMWVKSDSLRLVNIVNDKECYHVDFEPIQDAIQMMYERFNSCNLSFVRREHNGK

Query:  AHCLARSVASQS
        A  LA+S   Q+
Subjt:  AHCLARSVASQS

AT1G47497.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein7.2e-0725.89Show/hide
Query:  GWYMWFPNSNTSEDGSRRGGNSLNSLHAEGNALIWGLECAENKGIREMWVKSDSLRLVNIVNDKECYHVDFEPIQDAIQMMYERFNSCNLSFVRREHNGK
        GW +   +      G   G ++ N+L +E  AL+  ++   + G R++W + D+  ++ I+N ++     F  I+D +Q   +RF  C  +++ R+ N  
Subjt:  GWYMWFPNSNTSEDGSRRGGNSLNSLHAEGNALIWGLECAENKGIREMWVKSDSLRLVNIVNDKECYHVDFEPIQDAIQMMYERFNSCNLSFVRREHNGK

Query:  AHCLARSVASQS
        A  LA+S   Q+
Subjt:  AHCLARSVASQS

AT2G02650.1 Ribonuclease H-like superfamily protein1.9e-0729.92Show/hide
Query:  DVAWNKSSLNTSYGWYMWFPNSNTSEDGSRRGGNSLNSLHAEGNALIWGLECAENKGIREMWVKSDSLRLVNIVNDKECYHVDFEPIQDAIQMMYERFNS
        D  + + S  T  GW +   N +    G+ +  +S  SLHAE    +  L+     G+R +W +SDS  LV ++N+ E + +    I D    M  +   
Subjt:  DVAWNKSSLNTSYGWYMWFPNSNTSEDGSRRGGNSLNSLHAEGNALIWGLECAENKGIREMWVKSDSLRLVNIVNDKECYHVDFEPIQDAIQMMYERFNS

Query:  CNLSFVRREHNGKAHCLARSVASQSSI
        C+L FV RE N  A  LA  V ++  +
Subjt:  CNLSFVRREHNGKAHCLARSVASQSSI

AT2G46460.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.2e-0725.38Show/hide
Query:  WNKSSLNTSY--------GWYMWFPNSNTSEDGSRRGGNSLNSLHAEGNALIWGLECAENKGIREMWVKSDSLRLVNIVNDKECYHVDFEPIQDAIQMMY
        W K + + SY        GW +   +      G   G ++ N+L +E  AL+  ++   + G R++W + D+  ++ I+N ++     F  I+D +Q   
Subjt:  WNKSSLNTSY--------GWYMWFPNSNTSEDGSRRGGNSLNSLHAEGNALIWGLECAENKGIREMWVKSDSLRLVNIVNDKECYHVDFEPIQDAIQMMY

Query:  ERFNSCNLSFVRREHNGKAHCLARSVASQS
        +RF  C  +++ R+ N  A  LA+S   Q+
Subjt:  ERFNSCNLSFVRREHNGKAHCLARSVASQS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGTCGACGTCGCCTGGAATAAAAGCTCCCTAAATACCAGCTATGGGTGGTATATGTGGTTCCCTAATAGCAACACGAGCGAGGATGGATCGAGAAGGGGTGGAAA
TAGCTTGAATAGCCTGCATGCTGAGGGAAACGCCTTGATTTGGGGCTTGGAATGTGCAGAGAACAAAGGAATTAGGGAAATGTGGGTGAAGTCTGATTCTTTGAGGCTGG
TGAATATTGTAAATGACAAAGAGTGCTATCATGTGGACTTTGAGCCAATCCAAGATGCTATTCAGATGATGTATGAGAGATTTAATTCTTGTAATTTGTCATTTGTGAGG
AGAGAGCATAATGGAAAAGCACACTGCTTGGCCAGATCTGTAGCCTCTCAATCTTCTATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGGGTCGACGTCGCCTGGAATAAAAGCTCCCTAAATACCAGCTATGGGTGGTATATGTGGTTCCCTAATAGCAACACGAGCGAGGATGGATCGAGAAGGGGTGGAAA
TAGCTTGAATAGCCTGCATGCTGAGGGAAACGCCTTGATTTGGGGCTTGGAATGTGCAGAGAACAAAGGAATTAGGGAAATGTGGGTGAAGTCTGATTCTTTGAGGCTGG
TGAATATTGTAAATGACAAAGAGTGCTATCATGTGGACTTTGAGCCAATCCAAGATGCTATTCAGATGATGTATGAGAGATTTAATTCTTGTAATTTGTCATTTGTGAGG
AGAGAGCATAATGGAAAAGCACACTGCTTGGCCAGATCTGTAGCCTCTCAATCTTCTATTTAA
Protein sequenceShow/hide protein sequence
MWVDVAWNKSSLNTSYGWYMWFPNSNTSEDGSRRGGNSLNSLHAEGNALIWGLECAENKGIREMWVKSDSLRLVNIVNDKECYHVDFEPIQDAIQMMYERFNSCNLSFVR
REHNGKAHCLARSVASQSSI