CuGenDBv2

Gene ID	Lag0005075
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr6:10278141..10278698
RNA-Seq Expression	Lag0005075
Synteny	Lag0005075
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

7.0e-42

53.45

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Query:  DSSSSTNQIINPGNKISTVKLTNDNFLVWKVQIEFALNSHDLGDFINKDSVIPPKQIPSAEGSTVMRN---NPDYAKWKQQDSLISFWLLGSMTESLLEQ
        ++SS  NQI   GNKIS VKL +D FL+WK QI  AL ++DL +F+  +S  P K + S E S+       NP Y  WK+QD LIS WLLGSM+E +L Q
Subjt:  DSSSSTNQIINPGNKISTVKLTNDNFLVWKVQIEFALNSHDLGDFINKDSVIPPKQIPSAEGSTVMRN---NPDYAKWKQQDSLISFWLLGSMTESLLEQ

Query:  VIHCKSAKEIWKCLLLIFNSRNRAHIMRMKNKLQTLQKGSMLLNEYFAQIKKCIDALAAVGKEVDAEDHILYIL
        ++HCKSAKEIW+ L  IF+SR  A  M+ KNKL  ++KGSM L EYF +I +C+DALA++ K V ++DHILYIL
Subjt:  VIHCKSAKEIWKCLLLIFNSRNRAHIMRMKNKLQTLQKGSMLLNEYFAQIKKCIDALAAVGKEVDAEDHILYIL

KAA0053143.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]

1.2e-38

51.81

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Query:  IINPGNKISTVKLTNDNFLVWKVQIEFALNSHDLGDFINKDSVIPPKQIPSAEGSTVMRN---NPDYAKWKQQDSLISFWLLGSMTESLLEQVIHCKSAK
        I   GNKIS VKL++DNFL+WK QI  AL ++DL +F   +   P K + S   S+       NP+Y  WK+ + LIS WLLGSM+E +L Q++HCKSAK
Subjt:  IINPGNKISTVKLTNDNFLVWKVQIEFALNSHDLGDFINKDSVIPPKQIPSAEGSTVMRN---NPDYAKWKQQDSLISFWLLGSMTESLLEQVIHCKSAK

Query:  EIWKCLLLIFNSRNRAHIMRMKNKLQTLQKGSMLLNEYFAQIKKCIDALAAVGKEVDAEDHILYIL
        EIW  L  IF+SR  A  M+ KNKL  ++KGSM L EYF +I++C+DALA++ K V ++DHILYIL
Subjt:  EIWKCLLLIFNSRNRAHIMRMKNKLQTLQKGSMLLNEYFAQIKKCIDALAAVGKEVDAEDHILYIL

KAA0067213.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]

5.6e-39

51.72

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Query:  DSSSSTNQIINPGNKISTVKLTNDNFLVWKVQIEFALNSHDLGDFINKDSVIPPKQI---PSAEGSTVMRNNPDYAKWKQQDSLISFWLLGSMTESLLEQ
        ++SS  NQI    NKIS VKL++DNFL+WK QI  AL ++DL +F+  +S  P K +    S+  S     NP Y  WK+QD LIS WLLGSM+E +L Q
Subjt:  DSSSSTNQIINPGNKISTVKLTNDNFLVWKVQIEFALNSHDLGDFINKDSVIPPKQI---PSAEGSTVMRNNPDYAKWKQQDSLISFWLLGSMTESLLEQ

Query:  VIHCKSAKEIWKCLLLIFNSRNRAHIMRMKNKLQTLQKGSMLLNEYFAQIKKCIDALAAVGKEVDAEDHILYIL
        ++HCKSAKEIW  L  IF+SR  A  M+ KNKL  ++K SM L EYF +I+  +DALA++ K V ++DHILYIL
Subjt:  VIHCKSAKEIWKCLLLIFNSRNRAHIMRMKNKLQTLQKGSMLLNEYFAQIKKCIDALAAVGKEVDAEDHILYIL

TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

7.0e-42

53.45

Show/hide

Query:  DSSSSTNQIINPGNKISTVKLTNDNFLVWKVQIEFALNSHDLGDFINKDSVIPPKQIPSAEGSTVMRN---NPDYAKWKQQDSLISFWLLGSMTESLLEQ
        ++SS  NQI   GNKIS VKL +D FL+WK QI  AL ++DL +F+  +S  P K + S E S+       NP Y  WK+QD LIS WLLGSM+E +L Q
Subjt:  DSSSSTNQIINPGNKISTVKLTNDNFLVWKVQIEFALNSHDLGDFINKDSVIPPKQIPSAEGSTVMRN---NPDYAKWKQQDSLISFWLLGSMTESLLEQ

Query:  VIHCKSAKEIWKCLLLIFNSRNRAHIMRMKNKLQTLQKGSMLLNEYFAQIKKCIDALAAVGKEVDAEDHILYIL
        ++HCKSAKEIW+ L  IF+SR  A  M+ KNKL  ++KGSM L EYF +I +C+DALA++ K V ++DHILYIL
Subjt:  VIHCKSAKEIWKCLLLIFNSRNRAHIMRMKNKLQTLQKGSMLLNEYFAQIKKCIDALAAVGKEVDAEDHILYIL

TYK18917.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]

5.6e-39

51.72

Show/hide

Query:  DSSSSTNQIINPGNKISTVKLTNDNFLVWKVQIEFALNSHDLGDFINKDSVIPPKQI---PSAEGSTVMRNNPDYAKWKQQDSLISFWLLGSMTESLLEQ
        ++SS  NQI    NKIS VKL++DNFL+WK QI  AL ++DL +F+  +S  P K +    S+  S     NP Y  WK+QD LIS WLLGSM+E +L Q
Subjt:  DSSSSTNQIINPGNKISTVKLTNDNFLVWKVQIEFALNSHDLGDFINKDSVIPPKQI---PSAEGSTVMRNNPDYAKWKQQDSLISFWLLGSMTESLLEQ

Query:  VIHCKSAKEIWKCLLLIFNSRNRAHIMRMKNKLQTLQKGSMLLNEYFAQIKKCIDALAAVGKEVDAEDHILYIL
        ++HCKSAKEIW  L  IF+SR  A  M+ KNKL  ++K SM L EYF +I+  +DALA++ K V ++DHILYIL
Subjt:  VIHCKSAKEIWKCLLLIFNSRNRAHIMRMKNKLQTLQKGSMLLNEYFAQIKKCIDALAAVGKEVDAEDHILYIL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.4e-42

53.45

Show/hide

Query:  DSSSSTNQIINPGNKISTVKLTNDNFLVWKVQIEFALNSHDLGDFINKDSVIPPKQIPSAEGSTVMRN---NPDYAKWKQQDSLISFWLLGSMTESLLEQ
        ++SS  NQI   GNKIS VKL +D FL+WK QI  AL ++DL +F+  +S  P K + S E S+       NP Y  WK+QD LIS WLLGSM+E +L Q
Subjt:  DSSSSTNQIINPGNKISTVKLTNDNFLVWKVQIEFALNSHDLGDFINKDSVIPPKQIPSAEGSTVMRN---NPDYAKWKQQDSLISFWLLGSMTESLLEQ

Query:  VIHCKSAKEIWKCLLLIFNSRNRAHIMRMKNKLQTLQKGSMLLNEYFAQIKKCIDALAAVGKEVDAEDHILYIL
        ++HCKSAKEIW+ L  IF+SR  A  M+ KNKL  ++KGSM L EYF +I +C+DALA++ K V ++DHILYIL
Subjt:  VIHCKSAKEIWKCLLLIFNSRNRAHIMRMKNKLQTLQKGSMLLNEYFAQIKKCIDALAAVGKEVDAEDHILYIL

A0A5A7UB21 Keratin, type II cytoskeletal 1-like

6.0e-39

51.81

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Query:  IINPGNKISTVKLTNDNFLVWKVQIEFALNSHDLGDFINKDSVIPPKQIPSAEGSTVMRN---NPDYAKWKQQDSLISFWLLGSMTESLLEQVIHCKSAK
        I   GNKIS VKL++DNFL+WK QI  AL ++DL +F   +   P K + S   S+       NP+Y  WK+ + LIS WLLGSM+E +L Q++HCKSAK
Subjt:  IINPGNKISTVKLTNDNFLVWKVQIEFALNSHDLGDFINKDSVIPPKQIPSAEGSTVMRN---NPDYAKWKQQDSLISFWLLGSMTESLLEQVIHCKSAK

Query:  EIWKCLLLIFNSRNRAHIMRMKNKLQTLQKGSMLLNEYFAQIKKCIDALAAVGKEVDAEDHILYIL
        EIW  L  IF+SR  A  M+ KNKL  ++KGSM L EYF +I++C+DALA++ K V ++DHILYIL
Subjt:  EIWKCLLLIFNSRNRAHIMRMKNKLQTLQKGSMLLNEYFAQIKKCIDALAAVGKEVDAEDHILYIL

A0A5A7VGJ8 Keratin, type II cytoskeletal 1-like

2.7e-39

51.72

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Query:  DSSSSTNQIINPGNKISTVKLTNDNFLVWKVQIEFALNSHDLGDFINKDSVIPPKQI---PSAEGSTVMRNNPDYAKWKQQDSLISFWLLGSMTESLLEQ
        ++SS  NQI    NKIS VKL++DNFL+WK QI  AL ++DL +F+  +S  P K +    S+  S     NP Y  WK+QD LIS WLLGSM+E +L Q
Subjt:  DSSSSTNQIINPGNKISTVKLTNDNFLVWKVQIEFALNSHDLGDFINKDSVIPPKQI---PSAEGSTVMRNNPDYAKWKQQDSLISFWLLGSMTESLLEQ

Query:  VIHCKSAKEIWKCLLLIFNSRNRAHIMRMKNKLQTLQKGSMLLNEYFAQIKKCIDALAAVGKEVDAEDHILYIL
        ++HCKSAKEIW  L  IF+SR  A  M+ KNKL  ++K SM L EYF +I+  +DALA++ K V ++DHILYIL
Subjt:  VIHCKSAKEIWKCLLLIFNSRNRAHIMRMKNKLQTLQKGSMLLNEYFAQIKKCIDALAAVGKEVDAEDHILYIL

A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.4e-42

53.45

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Query:  DSSSSTNQIINPGNKISTVKLTNDNFLVWKVQIEFALNSHDLGDFINKDSVIPPKQIPSAEGSTVMRN---NPDYAKWKQQDSLISFWLLGSMTESLLEQ
        ++SS  NQI   GNKIS VKL +D FL+WK QI  AL ++DL +F+  +S  P K + S E S+       NP Y  WK+QD LIS WLLGSM+E +L Q
Subjt:  DSSSSTNQIINPGNKISTVKLTNDNFLVWKVQIEFALNSHDLGDFINKDSVIPPKQIPSAEGSTVMRN---NPDYAKWKQQDSLISFWLLGSMTESLLEQ

Query:  VIHCKSAKEIWKCLLLIFNSRNRAHIMRMKNKLQTLQKGSMLLNEYFAQIKKCIDALAAVGKEVDAEDHILYIL
        ++HCKSAKEIW+ L  IF+SR  A  M+ KNKL  ++KGSM L EYF +I +C+DALA++ K V ++DHILYIL
Subjt:  VIHCKSAKEIWKCLLLIFNSRNRAHIMRMKNKLQTLQKGSMLLNEYFAQIKKCIDALAAVGKEVDAEDHILYIL

A0A5D3D5T2 Keratin, type II cytoskeletal 1-like

2.7e-39

51.72

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Query:  DSSSSTNQIINPGNKISTVKLTNDNFLVWKVQIEFALNSHDLGDFINKDSVIPPKQI---PSAEGSTVMRNNPDYAKWKQQDSLISFWLLGSMTESLLEQ
        ++SS  NQI    NKIS VKL++DNFL+WK QI  AL ++DL +F+  +S  P K +    S+  S     NP Y  WK+QD LIS WLLGSM+E +L Q
Subjt:  DSSSSTNQIINPGNKISTVKLTNDNFLVWKVQIEFALNSHDLGDFINKDSVIPPKQI---PSAEGSTVMRNNPDYAKWKQQDSLISFWLLGSMTESLLEQ

Query:  VIHCKSAKEIWKCLLLIFNSRNRAHIMRMKNKLQTLQKGSMLLNEYFAQIKKCIDALAAVGKEVDAEDHILYIL
        ++HCKSAKEIW  L  IF+SR  A  M+ KNKL  ++K SM L EYF +I+  +DALA++ K V ++DHILYIL
Subjt:  VIHCKSAKEIWKCLLLIFNSRNRAHIMRMKNKLQTLQKGSMLLNEYFAQIKKCIDALAAVGKEVDAEDHILYIL

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

9.6e-18

28.48

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Query:  NKISTVKLTNDNFLVWKVQIEFALNSHDLGDFINKDSVIPPKQIPSAEGSTVMRNNPDYAKWKQQDSLISFWLLGSMTESLLEQVIHCKSAKEIWKCLLL
        N  +  KLT+ N+L+W  Q+    + ++L  F++  + +PP  I +       R NPDY +WK+QD LI   +LG+++ S+   V    +A +IW+ L  
Subjt:  NKISTVKLTNDNFLVWKVQIEFALNSHDLGDFINKDSVIPPKQIPSAEGSTVMRNNPDYAKWKQQDSLISFWLLGSMTESLLEQVIHCKSAKEIWKCLLL

Query:  IFNSRNRAHIMRMKNKLQTLQKGSMLLNEYFAQIKKCIDALAAVGKEVDAEDHILYIL
        I+ + +  H+ +++ +L+   KG+  +++Y   +    D LA +GK +D ++ +  +L
Subjt:  IFNSRNRAHIMRMKNKLQTLQKGSMLLNEYFAQIKKCIDALAAVGKEVDAEDHILYIL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

1.3e-11

25.95

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Query:  NKISTVKLTNDNFLVWKVQIEFALNSHDLGDFINKDSVIPPKQIPSAEGSTVMRNNPDYAKWKQQDSLISFWLLGSMTESLLEQVIHCKSAKEIWKCLLL
        N  +  KLT+ N+L+W  Q+    + ++L  F++  + +PP  I +     V R NPDY +W++QD LI   +LG+++ S+   V    +A +IW+ L  
Subjt:  NKISTVKLTNDNFLVWKVQIEFALNSHDLGDFINKDSVIPPKQIPSAEGSTVMRNNPDYAKWKQQDSLISFWLLGSMTESLLEQVIHCKSAKEIWKCLLL

Query:  IFNSRNRAHIMRMKNKLQTLQKGSMLLNEYFAQIKKCIDALAAVGKEVDAEDHILYIL
        I+ + +  H+ +++   +                    D LA +GK +D ++ +  +L
Subjt:  IFNSRNRAHIMRMKNKLQTLQKGSMLLNEYFAQIKKCIDALAAVGKEVDAEDHILYIL

Arabidopsis top hits

e value

%identity

Alignment

AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

7.6e-10

27.88

Show/hide

Query:  MDQTNTEVQITQDSSSS---TNQIINPGN-KISTVKLTNDNFLVWKVQIEFALNSHDLGDFINKDSVIPPKQIPSAEGSTVMRNNPDYAKWKQQDSLISF
        M +T   V  T D  S       I +P +  I  +    DN++ WK++    L       FI  D  + PK  P          +P Y  W+Q ++++ +
Subjt:  MDQTNTEVQITQDSSSS---TNQIINPGN-KISTVKLTNDNFLVWKVQIEFALNSHDLGDFINKDSVIPPKQIPSAEGSTVMRNNPDYAKWKQQDSLISF

Query:  WLLGSMTESLLEQVIHCKSAKEIWKCLLLIFNSRNRAHIMRMKNKLQTLQKGSMLLNEYFAQIKK
        WL+ SMT+ LLE V++ ++A ++W+ L  +F       I +++ +L TL++G   + EYF ++ K
Subjt:  WLLGSMTESLLEQVIHCKSAKEIWKCLLLIFNSRNRAHIMRMKNKLQTLQKGSMLLNEYFAQIKK

AT5G48050.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)

1.1e-08

26.26

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Query:  KWKQQDSLISFWLLGSMTESLLEQVIHCK-SAKEIWKCLLLIFNSRNRAHIMRMKNKLQTLQKGSMLLNEYFAQIKKCIDALAAVGKEVDAEDHILYIL
        +WK++D L+  W+ G++T+SLL+ +I    +A+++W  L  +F     A  ++ +N+L+T     + ++EY  ++K   D L  V   +     ++++L
Subjt:  KWKQQDSLISFWLLGSMTESLLEQVIHCK-SAKEIWKCLLLIFNSRNRAHIMRMKNKLQTLQKGSMLLNEYFAQIKKCIDALAAVGKEVDAEDHILYIL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGATCAAACAAATACGGAAGTTCAGATTACTCAAGATTCGAGTAGTTCAACAAATCAGATCATAAATCCGGGTAACAAAATATCCACGGTTAAACTCACAAATGATAA
TTTTCTTGTATGGAAAGTCCAGATTGAGTTTGCCCTAAACAGTCATGACCTTGGAGATTTCATCAATAAAGACTCTGTCATTCCTCCAAAACAAATTCCGTCTGCTGAAG
GATCTACCGTCATGAGGAACAATCCAGATTATGCGAAGTGGAAACAACAAGATAGTCTAATATCTTTTTGGTTATTGGGATCAATGACTGAGAGCTTACTTGAACAAGTC
ATTCACTGTAAGTCCGCGAAAGAGATATGGAAGTGTCTATTGTTAATCTTCAATTCCAGAAATAGAGCACATATTATGAGAATGAAGAATAAACTTCAGACTCTACAGAA
AGGATCAATGCTATTAAATGAATATTTTGCTCAGATAAAGAAGTGTATCGATGCTCTCGCGGCCGTAGGAAAAGAAGTTGATGCTGAAGATCATATCTTGTACATATTAT
GGTCTTGA

mRNA sequence

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Protein sequence

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MDQTNTEVQITQDSSSSTNQIINPGNKISTVKLTNDNFLVWKVQIEFALNSHDLGDFINKDSVIPPKQIPSAEGSTVMRNNPDYAKWKQQDSLISFWLLGSMTESLLEQV
IHCKSAKEIWKCLLLIFNSRNRAHIMRMKNKLQTLQKGSMLLNEYFAQIKKCIDALAAVGKEVDAEDHILYILWS

Lag0005075 (gene) of Sponge gourd (AG-4) v1 genome