; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0005093 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005093
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr6:10550616..10552335
RNA-Seq ExpressionLag0005093
SyntenyLag0005093
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]6.6e-2064.89Show/hide
Query:  MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL
        +SMA  EE NQC MST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M + + K F E N D K+HS VPSRMKRK SV I TEGSL
Subjt:  MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.1e-1964.89Show/hide
Query:  MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL
        +SMA  EE NQC  ST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+HS VPSRMKRK SV I TEGSL
Subjt:  MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]1.1e-1964.89Show/hide
Query:  MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL
        +SMA  EE NQC  ST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+HS VPSRMKRK SV I TEGSL
Subjt:  MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.5e-1963.83Show/hide
Query:  MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL
        +SMA  EE NQC  ST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+H+ VPSRMKRK SV I TEGSL
Subjt:  MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.5e-1963.83Show/hide
Query:  MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL
        +SMA  EE NQC  ST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+H+ VPSRMKRK SV I TEGSL
Subjt:  MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein3.2e-2064.89Show/hide
Query:  MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL
        +SMA  EE NQC MST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M + + K F E N D K+HS VPSRMKRK SV I TEGSL
Subjt:  MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL

A0A5A7TQ06 Retrotransposon gag protein5.4e-2064.89Show/hide
Query:  MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL
        +SMA  EE NQC  ST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+HS VPSRMKRK SV I TEGSL
Subjt:  MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL

A0A5A7UI09 Retrotransposon gag protein1.2e-1963.83Show/hide
Query:  MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL
        +SMA  EE NQC  ST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+H+ VPSRMKRK SV I TEGSL
Subjt:  MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL

A0A5D3BBF9 Gag protease polyprotein5.4e-2064.89Show/hide
Query:  MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL
        +SMA  EE NQC  ST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+HS VPSRMKRK SV I TEGSL
Subjt:  MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL

A0A5D3CCI8 Retrotransposon gag protein1.2e-1963.83Show/hide
Query:  MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL
        +SMA  EE NQC  ST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+H+ VPSRMKRK SV I TEGSL
Subjt:  MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGCCGCGACAGAGGAAGCAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTC
GACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAAATGGACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACCGCGACAAGAAACTTCATA
GTAGCGTCCCGTCACGTATGAAGAGGAAATTCTCTGTTCTCATAACTACAGAAGGTTCCTTGAAGTGGGGGCAACACAGCGAATGGAAGTTGCTTCCTCCAAGTTCGAAG
GTTCCCACGCGCTTCGCTGCAGTTCCGTCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTT
CCTTCCTCACAGTTCGAAGGTTCTCACGCATTTCGCTACAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTT
CTCACGCGTTTCACTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCCAAGTTCGAAGGTTCTCACATCGCTTCGCTTCGCTCAC
GCGCTTCGCTGCGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGTTCAAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCC
AAATTCGAAGGTTCTCACGCGCTTCGTTGCATTTCCTTCCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGTTCGAAGGTTCTCACGCAC
TTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCATTTCCTTCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCAGCAGTTCCTTCCTCAAAGT
TCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGT
TGCACTCCAGCGCTACTTCCTAAAGTCTAAAGACGTCAATTGCCCTCACGCTGCGCTGCTTCTTTCTCCAGGTTCGAGGGTCCTCATGCTACGCTCGGCTACATTGCTGC
GCTACTTCCTAAAGTCCAAAGACGTCAATTGTCCCTGCACTCGTGCTGAAAGGCGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCA
CTCGTGCTGAAAGGCGCGACGGCGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACACGTCCGTGCACTCGTGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGCCGCGACAGAGGAAGCAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTC
GACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAAATGGACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACCGCGACAAGAAACTTCATA
GTAGCGTCCCGTCACGTATGAAGAGGAAATTCTCTGTTCTCATAACTACAGAAGGTTCCTTGAAGTGGGGGCAACACAGCGAATGGAAGTTGCTTCCTCCAAGTTCGAAG
GTTCCCACGCGCTTCGCTGCAGTTCCGTCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTT
CCTTCCTCACAGTTCGAAGGTTCTCACGCATTTCGCTACAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTT
CTCACGCGTTTCACTGCAGTTCCTTCCTCACAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCCAAGTTCGAAGGTTCTCACATCGCTTCGCTTCGCTCAC
GCGCTTCGCTGCGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGTTCAAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCC
AAATTCGAAGGTTCTCACGCGCTTCGTTGCATTTCCTTCCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGTTCGAAGGTTCTCACGCAC
TTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCATTTCCTTCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCAGCAGTTCCTTCCTCAAAGT
TCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGT
TGCACTCCAGCGCTACTTCCTAAAGTCTAAAGACGTCAATTGCCCTCACGCTGCGCTGCTTCTTTCTCCAGGTTCGAGGGTCCTCATGCTACGCTCGGCTACATTGCTGC
GCTACTTCCTAAAGTCCAAAGACGTCAATTGTCCCTGCACTCGTGCTGAAAGGCGTGGCGGCGACACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCA
CTCGTGCTGAAAGGCGCGACGGCGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACACGTCCGTGCACTCGTGCTGA
Protein sequenceShow/hide protein sequence
MSMAATEEANQCSMSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSLKWGQHSEWKLLPPSSK
VPTRFAAVPSPKFEGSHALRCSSFLTVRRFSRASLQFLPHSSKVLTHFATVPSPQVRRFSRRFAAVPSSKFEGSHAFHCSSFLTVRRFSRASLQFLLPSSKVLTSLRFAH
ALRCVPSSKFEGSHALRSAIPSPSSKVLTRFVQFLPPNSKVLTRFVAFPSPQIRRFSRASLCNSFPKFEGSHALRAVPSSKFEGSHALRCISFPQIRRFSRASQQFLPQS
SKVLTRFALQFLPPSSKVLTRFVQFLPPNSKVLTRFVALQRYFLKSKDVNCPHAALLLSPGSRVLMLRSATLLRYFLKSKDVNCPCTRAERRGGDTSPRNMSQLKEHVRA
LVLKGATAAQVQGTCPNSRNTSVHSC