; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0005104 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005104
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTranscription elongation factor B polypeptide 3 isoform X2
Genome locationchr6:10738977..10739981
RNA-Seq ExpressionLag0005104
SyntenyLag0005104
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054521.1 transcription elongation factor B polypeptide 3 isoform X2 [Cucumis melo var. makuwa]2.0e-1233.53Show/hide
Query:  KVNNDFHLRKNATGRKVVLEERKGAKVRRMDLDLGTFAWVRDCLMAISKAKNPMGFWRRRRLDAAVIFFQKTSIFIPEGSNSKGWGALEASMTGLLPPVK
        K N   H R +  GRK+ +EER G + R+++L+LGT AWVRDCL+A ++  NP+ FWRRR L+        T + IP+G N  G   L A          
Subjt:  KVNNDFHLRKNATGRKVVLEERKGAKVRRMDLDLGTFAWVRDCLMAISKAKNPMGFWRRRRLDAAVIFFQKTSIFIPEGSNSKGWGALEASMTGLLPPVK

Query:  PTNQKRNQERRITSNIGSK--INTSKSFAEAVKEGPSRI----LEEDLKYSEDVSFAFDCTEAVIVERTS
                E  +    GS+  + + K     VK   S++      ED K+  D+    DC   VI++ TS
Subjt:  PTNQKRNQERRITSNIGSK--INTSKSFAEAVKEGPSRI----LEEDLKYSEDVSFAFDCTEAVIVERTS

KAE8646271.1 hypothetical protein Csa_023831, partial [Cucumis sativus]1.2e-0436.36Show/hide
Query:  KEGPSRILEEDLK-----YSEDVSFAFDCTEAVIVERTSINSSWGDIKEACLRLVNIGLSLQPFCANMAVGLCGSDKEAKDLIRMGSA
        K  P   LEE++K         + F F C   +I+++      WG +K+   +   I      FCAN+AVG+C S  EAKDLIR+GS+
Subjt:  KEGPSRILEEDLK-----YSEDVSFAFDCTEAVIVERTSINSSWGDIKEACLRLVNIGLSLQPFCANMAVGLCGSDKEAKDLIRMGSA

KAE8648463.1 hypothetical protein Csa_023678, partial [Cucumis sativus]2.0e-0437.21Show/hide
Query:  NIGLSLQPFCANMAVGLCGSDKEAKDLIRMGSAVKPDFFSVHEWDFKVIAERKCQNFNGGWITTLDVPPFFRTKQMISNLAGMCGG
        N GL  +  C ++ +   G   ++  +I    A K  FF V  WDF+VI  ++ Q F GG +  LDVPPFF  K    +L   CGG
Subjt:  NIGLSLQPFCANMAVGLCGSDKEAKDLIRMGSAVKPDFFSVHEWDFKVIAERKCQNFNGGWITTLDVPPFFRTKQMISNLAGMCGG

TYK14183.1 hypothetical protein E5676_scaffold8046G00070 [Cucumis melo var. makuwa]5.4e-2635.17Show/hide
Query:  MNRPKKVNNDFHLRKNATGRKVVLEERKGAKVRRMDLDLGTFAWVRDCLMAISKAKNPMGFWRRRRLDAAVIFFQ--------------------KTSIF
        M + K    +F +      RK+ +EER G    +++LD GT AWVRDCL+  + A N M FW +RRL+ A+IFFQ                    KT IF
Subjt:  MNRPKKVNNDFHLRKNATGRKVVLEERKGAKVRRMDLDLGTFAWVRDCLMAISKAKNPMGFWRRRRLDAAVIFFQ--------------------KTSIF

Query:  IPEGSNSKGWGALEASMTGLLPPVKPTNQKRNQERRITSNIGSKINTSKSFAEAVKEGPSRILEEDLKYSEDVSFAFDCTEAVIVERTSINSSWGDIKEA
        IPEGS   GW +L   ++ LLP     NQK           GS    +K+  EA K     +     +  +DV FAF+    VI+++   +S WG +K+ 
Subjt:  IPEGSNSKGWGALEASMTGLLPPVKPTNQKRNQERRITSNIGSKINTSKSFAEAVKEGPSRILEEDLKYSEDVSFAFDCTEAVIVERTSINSSWGDIKEA

Query:  CLRLVNIGLSLQPFCANMAVGLCGSDKEAKDLIRMG
          +   I  + + FCAN+AVG+ GSD EAK+ + +G
Subjt:  CLRLVNIGLSLQPFCANMAVGLCGSDKEAKDLIRMG

TrEMBL top hitse value%identityAlignment
A0A0A0KB99 Uncharacterized protein7.4e-0540.23Show/hide
Query:  MDLDLGTFAWVRDCLMAISKAKNPMGFWRRRRLDAAVIFFQ--------------------KTSIFIPEGSNSKGWGALEASMTGLL
        M+LD GT A VRDCL   + A NP  FW RR L  A+IFFQ                    KT IFI +GS  KG  +    ++ LL
Subjt:  MDLDLGTFAWVRDCLMAISKAKNPMGFWRRRRLDAAVIFFQ--------------------KTSIFIPEGSNSKGWGALEASMTGLL

A0A0A0KGZ5 Uncharacterized protein7.1e-0847.69Show/hide
Query:  HLRKNA-TGRKVVLEERKGAKVRRMDLDLGTFAWVRDCLMAISKAKNPMGFWRRRRLDAAVIFFQ
        +L++NA  GRK+ +EE  G +  +++L+LG  AWV DCL+A ++  NP+GFW RR L+   IFFQ
Subjt:  HLRKNA-TGRKVVLEERKGAKVRRMDLDLGTFAWVRDCLMAISKAKNPMGFWRRRRLDAAVIFFQ

A0A0A0LY03 Uncharacterized protein4.5e-1039.58Show/hide
Query:  TGRKVVLEERKGAKVRRMDLDLGTFAWVRDCLMAISKAKNPMGFWRRRRLDAAVIFFQ--------------------KTSIFIPEGSNSKGWGAL
        + RK+ +EER G K  ++DLDLGT  WV D L A + A   MG W+R++LD  +IFFQ                    K  +FI EGS   GW +L
Subjt:  TGRKVVLEERKGAKVRRMDLDLGTFAWVRDCLMAISKAKNPMGFWRRRRLDAAVIFFQ--------------------KTSIFIPEGSNSKGWGAL

A0A5A7ULV4 Transcription elongation factor B polypeptide 3 isoform X29.6e-1333.53Show/hide
Query:  KVNNDFHLRKNATGRKVVLEERKGAKVRRMDLDLGTFAWVRDCLMAISKAKNPMGFWRRRRLDAAVIFFQKTSIFIPEGSNSKGWGALEASMTGLLPPVK
        K N   H R +  GRK+ +EER G + R+++L+LGT AWVRDCL+A ++  NP+ FWRRR L+        T + IP+G N  G   L A          
Subjt:  KVNNDFHLRKNATGRKVVLEERKGAKVRRMDLDLGTFAWVRDCLMAISKAKNPMGFWRRRRLDAAVIFFQKTSIFIPEGSNSKGWGALEASMTGLLPPVK

Query:  PTNQKRNQERRITSNIGSK--INTSKSFAEAVKEGPSRI----LEEDLKYSEDVSFAFDCTEAVIVERTS
                E  +    GS+  + + K     VK   S++      ED K+  D+    DC   VI++ TS
Subjt:  PTNQKRNQERRITSNIGSK--INTSKSFAEAVKEGPSRI----LEEDLKYSEDVSFAFDCTEAVIVERTS

A0A5D3CQQ0 Uncharacterized protein2.6e-2635.17Show/hide
Query:  MNRPKKVNNDFHLRKNATGRKVVLEERKGAKVRRMDLDLGTFAWVRDCLMAISKAKNPMGFWRRRRLDAAVIFFQ--------------------KTSIF
        M + K    +F +      RK+ +EER G    +++LD GT AWVRDCL+  + A N M FW +RRL+ A+IFFQ                    KT IF
Subjt:  MNRPKKVNNDFHLRKNATGRKVVLEERKGAKVRRMDLDLGTFAWVRDCLMAISKAKNPMGFWRRRRLDAAVIFFQ--------------------KTSIF

Query:  IPEGSNSKGWGALEASMTGLLPPVKPTNQKRNQERRITSNIGSKINTSKSFAEAVKEGPSRILEEDLKYSEDVSFAFDCTEAVIVERTSINSSWGDIKEA
        IPEGS   GW +L   ++ LLP     NQK           GS    +K+  EA K     +     +  +DV FAF+    VI+++   +S WG +K+ 
Subjt:  IPEGSNSKGWGALEASMTGLLPPVKPTNQKRNQERRITSNIGSKINTSKSFAEAVKEGPSRILEEDLKYSEDVSFAFDCTEAVIVERTSINSSWGDIKEA

Query:  CLRLVNIGLSLQPFCANMAVGLCGSDKEAKDLIRMG
          +   I  + + FCAN+AVG+ GSD EAK+ + +G
Subjt:  CLRLVNIGLSLQPFCANMAVGLCGSDKEAKDLIRMG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCGTCCAAAGAAGGTGAACAACGACTTTCACCTTCGAAAGAATGCGACCGGGAGGAAAGTGGTGTTGGAGGAAAGGAAGGGAGCGAAAGTGAGGCGAATGGATCT
AGATTTGGGAACGTTCGCGTGGGTTAGGGACTGCCTTATGGCCATTTCGAAGGCAAAAAACCCAATGGGATTTTGGAGAAGAAGAAGGCTAGATGCTGCAGTAATTTTCT
TTCAGAAAACCTCGATCTTTATTCCAGAAGGATCTAACTCGAAGGGATGGGGAGCTTTGGAAGCGTCGATGACGGGTCTTCTTCCTCCCGTGAAGCCGACGAACCAGAAA
AGAAATCAAGAAAGAAGGATCACGAGCAACATAGGTAGCAAGATCAACACCTCAAAATCGTTTGCAGAGGCAGTGAAGGAGGGCCCGAGTCGGATACTTGAAGAGGATTT
GAAATATTCAGAAGACGTCAGCTTTGCCTTCGATTGCACGGAAGCGGTGATTGTAGAGAGAACCTCCATTAACTCGAGTTGGGGAGATATCAAGGAAGCGTGCTTGAGGT
TAGTTAACATTGGCCTATCTCTACAACCTTTCTGTGCTAACATGGCAGTGGGTCTATGTGGAAGCGATAAGGAAGCTAAAGATTTGATTCGGATGGGCTCTGCTGTGAAA
CCTGATTTTTTCTCAGTCCACGAGTGGGATTTTAAGGTGATAGCTGAAAGAAAATGCCAAAATTTCAACGGTGGATGGATTACGACCCTGGATGTCCCACCATTTTTTAG
AACCAAACAGATGATTTCCAATCTTGCAGGCATGTGCGGGGGATTGGAGGAAGAAGAAAGATTTTCGGTGAGAATTGCTGAACCGATGAAATATGCTTCAAAGTCAAGAG
GAATGATAGCGGTTTCATTCCCACGTCGTGCTACGTTAATCACGAGAAGACGTACTTTCCGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACCGTCCAAAGAAGGTGAACAACGACTTTCACCTTCGAAAGAATGCGACCGGGAGGAAAGTGGTGTTGGAGGAAAGGAAGGGAGCGAAAGTGAGGCGAATGGATCT
AGATTTGGGAACGTTCGCGTGGGTTAGGGACTGCCTTATGGCCATTTCGAAGGCAAAAAACCCAATGGGATTTTGGAGAAGAAGAAGGCTAGATGCTGCAGTAATTTTCT
TTCAGAAAACCTCGATCTTTATTCCAGAAGGATCTAACTCGAAGGGATGGGGAGCTTTGGAAGCGTCGATGACGGGTCTTCTTCCTCCCGTGAAGCCGACGAACCAGAAA
AGAAATCAAGAAAGAAGGATCACGAGCAACATAGGTAGCAAGATCAACACCTCAAAATCGTTTGCAGAGGCAGTGAAGGAGGGCCCGAGTCGGATACTTGAAGAGGATTT
GAAATATTCAGAAGACGTCAGCTTTGCCTTCGATTGCACGGAAGCGGTGATTGTAGAGAGAACCTCCATTAACTCGAGTTGGGGAGATATCAAGGAAGCGTGCTTGAGGT
TAGTTAACATTGGCCTATCTCTACAACCTTTCTGTGCTAACATGGCAGTGGGTCTATGTGGAAGCGATAAGGAAGCTAAAGATTTGATTCGGATGGGCTCTGCTGTGAAA
CCTGATTTTTTCTCAGTCCACGAGTGGGATTTTAAGGTGATAGCTGAAAGAAAATGCCAAAATTTCAACGGTGGATGGATTACGACCCTGGATGTCCCACCATTTTTTAG
AACCAAACAGATGATTTCCAATCTTGCAGGCATGTGCGGGGGATTGGAGGAAGAAGAAAGATTTTCGGTGAGAATTGCTGAACCGATGAAATATGCTTCAAAGTCAAGAG
GAATGATAGCGGTTTCATTCCCACGTCGTGCTACGTTAATCACGAGAAGACGTACTTTCCGGTGA
Protein sequenceShow/hide protein sequence
MNRPKKVNNDFHLRKNATGRKVVLEERKGAKVRRMDLDLGTFAWVRDCLMAISKAKNPMGFWRRRRLDAAVIFFQKTSIFIPEGSNSKGWGALEASMTGLLPPVKPTNQK
RNQERRITSNIGSKINTSKSFAEAVKEGPSRILEEDLKYSEDVSFAFDCTEAVIVERTSINSSWGDIKEACLRLVNIGLSLQPFCANMAVGLCGSDKEAKDLIRMGSAVK
PDFFSVHEWDFKVIAERKCQNFNGGWITTLDVPPFFRTKQMISNLAGMCGGLEEEERFSVRIAEPMKYASKSRGMIAVSFPRRATLITRRRTFR