| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] | 7.8e-152 | 41.48 | Show/hide |
Query: NSEISSGSQNGQIVNPGNKISTVKLTDENFLMWKFQILTALEGHDLDDHISGDSQPLPELI--QVSENATTVSKPNPAYKVWKKQDKLVSSWIVGSMSES
N+E S S QI GNKIS VKL D+ FL+WKFQILTALE +DL++ + +S+P + + S +A+ PNPAYKVWK+QD+L+SSW++GSMSE
Subjt: NSEISSGSQNGQIVNPGNKISTVKLTDENFLMWKFQILTALEGHDLDDHISGDSQPLPELI--QVSENATTVSKPNPAYKVWKKQDKLVSSWIVGSMSES
Query: ILEQVLH---------------------------------------------------------------------------------------------
IL Q+LH
Subjt: ILEQVLH---------------------------------------------------------------------------------------------
Query: --YVVALLLTHESRIESKSVINSDNVLPSANLAVQNVSQNSV------PNPSPNSQQQNFGNGRGRSRSNFGQNRGGRSWNNRNRPQCQLCNKIGHTAMK
V++LLLT ES+ ESK + S+ LPS N+ Q + + N N+ N GRG RSN G+ NRN+PQCQ+C K+G++A +
Subjt: --YVVALLLTHESRIESKSVINSDNVLPSANLAVQNVSQNSV------PNPSPNSQQQNFGNGRGRSRSNFGQNRGGRSWNNRNRPQCQLCNKIGHTAMK
Query: CYSRVQMPGAYATQFNPPG-QMNPSGLNFSPQQF------------------------------------------------NGLAISHLGYASFTSSN-
C+ R P + ++ ++P + + +N PQ +GL I+H G SF SS
Subjt: CYSRVQMPGAYATQFNPPG-QMNPSGLNFSPQQF------------------------------------------------NGLAISHLGYASFTSSN-
Query: -NHMFHLNNLLHVPSITKNLISVSQFAKDNAVFFEFHPTFCVVKDLATGRALLRGTLHEGLYRFNLPQPLPSLNTSVVRPETNT-AVFSTLPCVSNDVSA
F LNNLL VPSITKNLISVSQFAKDN VFFEFHPT C VKDL TG+ LL+G L++GLY+F + L+ S +NT VF+T+
Subjt: -NHMFHLNNLLHVPSITKNLISVSQFAKDNAVFFEFHPTFCVVKDLATGRALLRGTLHEGLYRFNLPQPLPSLNTSVVRPETNT-AVFSTLPCVSNDVSA
Query: LYSSVQSSNNLSIDVWHQRLGHPSISIVKQVVRSCNPKVSTNAIMSFCHACAIGKHHAMPFSPSTTSYSAPLQLIVTDLWGPAYKLSTHGFQYYISFVDA
V SN +D+WH+RLGHP + IVK V+ + T ++FC ACA+GKHHA+PFS S T Y+ PLQLI DLWGPA +S +GF+YYISFVDA
Subjt: LYSSVQSSNNLSIDVWHQRLGHPSISIVKQVVRSCNPKVSTNAIMSFCHACAIGKHHAMPFSPSTTSYSAPLQLIVTDLWGPAYKLSTHGFQYYISFVDA
Query: FSRYTWIYFLQTKSEAFQAFLKFKTHVEKQFGTPIVS----------------------------FKLMENGIVERKHRHIVDVGLTLLSHSSIPLTFWD
+SRYTWIYFL +KS+AF AF KFKT VEK G I S + +N IVERKHR+I+++GLTLLS +++PL+FWD
Subjt: FSRYTWIYFLQTKSEAFQAFLKFKTHVEKQFGTPIVS----------------------------FKLMENGIVERKHRHIVDVGLTLLSHSSIPLTFWD
Query: DAFSTSVYLINRLPSIVLGGMSPLEKLFRKQPDYSTLKVFGCKCFPCLRPYNSHKLSFRSSPCTFIGYSHIHKGYKCLSSDGRLYISRHVLFDENSFPFA
+AFSTSVYLINRLP+ VL +SPLEKLF ++P++ +L+VFGCKC+P LRPY SHKLS RS+PCTF+GYS HKGYKCL+SDGRL+ISRHVLFDENSFP+A
Subjt: DAFSTSVYLINRLPSIVLGGMSPLEKLFRKQPDYSTLKVFGCKCFPCLRPYNSHKLSFRSSPCTFIGYSHIHKGYKCLSSDGRLYISRHVLFDENSFPFA
Query: SLTSHSSVSPNCVTQSLPTLSSVSSSTTVESSSDAHLSISETSSIPSTADH
S SHSS +P P L S+ S+ + + D T ++ DH
Subjt: SLTSHSSVSPNCVTQSLPTLSSVSSSTTVESSSDAHLSISETSSIPSTADH
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| RVW44519.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | 8.1e-133 | 35.76 | Show/hide |
Query: IVNPGNKISTVKLTDENFLMWKFQILTALEGHDLDDHISGDSQPLPELIQVSENATTVSKPNPAYKVWKKQDKLVSSWIVGSMSESILEQV---------
+++P +++ T++L D+NFLMWK+QI A+ G+ L+ + G Q P+++ + V PNP ++ +++QD L+ SW++ S+ + L QV
Subjt: IVNPGNKISTVKLTDENFLMWKFQILTALEGHDLDDHISGDSQPLPELIQVSENATTVSKPNPAYKVWKKQDKLVSSWIVGSMSESILEQV---------
Query: ---------------------------------------------------------LHYVVALLLTHESRIESKSVINSDNVLPSANLAVQNVSQ--NS
L YV + L+ HE RI K N +V ++ + + S NS
Subjt: ---------------------------------------------------------LHYVVALLLTHESRIESKSVINSDNVLPSANLAVQNVSQ--NS
Query: VPNPSPNSQQQNFGNGRGRSRSNFGQNRG---GRSWNNRNRPQCQLCNKIGHTAMKCYSRVQ------------MPGA----------------------
PS Q +N G +R +F NRG GR+ +PQCQLCNK GHT +C+ R PG
Subjt: VPNPSPNSQQQNFGNGRGRSRSNFGQNRG---GRSWNNRNRPQCQLCNKIGHTAMKCYSRVQ------------MPGA----------------------
Query: -YATQFNPP---------------------------------GQMNPSGLNFSPQ------QFNGLAISHLGYASFTSSN--NHMFHLNNLLHVPSITKN
Y Q N G +N SG ++ GL ISH+G + F SS+ N + L N+L VP+I KN
Subjt: -YATQFNPP---------------------------------GQMNPSGLNFSPQ------QFNGLAISHLGYASFTSSN--NHMFHLNNLLHVPSITKN
Query: LISVSQFAKDNAVFFEFHPTFCVVKDLATGRALLRGTLHEGLYRFNLPQPLPSLNTSV-VRPETNTAVFSTLPCVSNDVSALYSSVQSSNNLSIDVWHQR
L+SVSQFA+DN V+FEFHP C VKD + LL+G LH+GLY+FNL + L + + + + N V ND S SS ++ D+WH+R
Subjt: LISVSQFAKDNAVFFEFHPTFCVVKDLATGRALLRGTLHEGLYRFNLPQPLPSLNTSV-VRPETNTAVFSTLPCVSNDVSALYSSVQSSNNLSIDVWHQR
Query: LGHPSISIVKQVVRSCNPKVSTNAIMSFCHACAIGKHHAMPFSPSTTSYSAPLQLIVTDLWGPAYKLSTHGFQYYISFVDAFSRYTWIYFLQTKSEAFQA
LGHP+ IV QV+ ST + S C AC +GK H +PF S T Y+ PLQL+V+DLWGPA S++GF YY+SFVDA+SRYTW+YFL+TKS+ +A
Subjt: LGHPSISIVKQVVRSCNPKVSTNAIMSFCHACAIGKHHAMPFSPSTTSYSAPLQLIVTDLWGPAYKLSTHGFQYYISFVDAFSRYTWIYFLQTKSEAFQA
Query: FLKFKTHVEKQFGTPIVSFKL----------------------------MENGIVERKHRHIVDVGLTLLSHSSIPLTFWDDAFSTSVYLINRLPSIVLG
FL FK E QFG + +F+ +NGI+ERKHRHIV++GLTLL+ +S+PL +W DAFST+V+LINRLP+ VL
Subjt: FLKFKTHVEKQFGTPIVSFKL----------------------------MENGIVERKHRHIVDVGLTLLSHSSIPLTFWDDAFSTSVYLINRLPSIVLG
Query: GMSPLEKLFRKQPDYSTLKVFGCKCFPCLRPYNSHKLSFRSSPCTFIGYSHIHKGYKCLSSDGRLYISRHVLFDENSFPFA-------SLTSHSSVSPNC
P E LF +P+YS LKVFGC CFP LRPYN HKL FRSSPCTF+GYS HKGYKCL+ GR++ISR V+FDE FPFA + SHS+V C
Subjt: GMSPLEKLFRKQPDYSTLKVFGCKCFPCLRPYNSHKLSFRSSPCTFIGYSHIHKGYKCLSSDGRLYISRHVLFDENSFPFA-------SLTSHSSVSPNC
Query: V-------------TQSLPTLSSVSSSTTVES----------------SSDAHLSISETSSIPST---------------ADHPTN--NSPSPCFLNRTH
+ + SLPT S+ SS E+ SS ++E++SIPS+ +D P N+ F + H
Subjt: V-------------TQSLPTLSSVSSSTTVES----------------SSDAHLSISETSSIPST---------------ADHPTN--NSPSPCFLNRTH
Query: HMITRSKRGIFKPKAFLATFVDVEPPNVKETLKCSHWKQAMQDEYDAL
HM+TRSK GIFKPK + EP +E + WK+AM +E+ AL
Subjt: HMITRSKRGIFKPKAFLATFVDVEPPNVKETLKCSHWKQAMQDEYDAL
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| RVW60229.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | 1.9e-129 | 34.7 | Show/hide |
Query: IVNPGNKISTVKLTDENFLMWKFQILTALEGHDLDDHISGDSQPLPELIQVSENATTVSKPNPAYKVWKKQDKLVSSWIVGSMSESILEQV---------
+++P +++ T++L D+NFLMWK+QI A+ G+ L+ + G Q P+++ + V PNP ++ +++QD L+ SW++ S+ + L QV
Subjt: IVNPGNKISTVKLTDENFLMWKFQILTALEGHDLDDHISGDSQPLPELIQVSENATTVSKPNPAYKVWKKQDKLVSSWIVGSMSESILEQV---------
Query: --------------------------------------------------------------------------------------LHYVVALLLTHESR
L YV + L+ HE R
Subjt: --------------------------------------------------------------------------------------LHYVVALLLTHESR
Query: IESKSVINSDNVLPSANLAVQNVSQ--NSVPNPSPNSQQQNFGNGRGRSRSNFGQNRG---GRSWNNRNRPQCQLCNKIGHTAMKCYSRVQ---------
I K N +V ++ + + S NS PS Q +N G +R +F NRG GR+ +PQCQLCNK GHT +C+ R
Subjt: IESKSVINSDNVLPSANLAVQNVSQ--NSVPNPSPNSQQQNFGNGRGRSRSNFGQNRG---GRSWNNRNRPQCQLCNKIGHTAMKCYSRVQ---------
Query: ---MPGA-----------------------YATQFNPP---------------------------------GQMNPSGLNFSPQ------QFNGLAISHL
PG Y Q N G +N SG ++ GL ISH+
Subjt: ---MPGA-----------------------YATQFNPP---------------------------------GQMNPSGLNFSPQ------QFNGLAISHL
Query: GYASFTSSN--NHMFHLNNLLHVPSITKNLISVSQFAKDNAVFFEFHPTFCVVKDLATGRALLRGTLHEGLYRFNLPQPLPSLNTSV-VRPETNTAVFST
G + F SS+ N + L N+L VP+I KNL+SVSQFA+DN V+FEFHP C VKD + LL+G LH+GLY+FNL + L + + + + N
Subjt: GYASFTSSN--NHMFHLNNLLHVPSITKNLISVSQFAKDNAVFFEFHPTFCVVKDLATGRALLRGTLHEGLYRFNLPQPLPSLNTSV-VRPETNTAVFST
Query: LPCVSNDVSALYSSVQSSNNLSIDVWHQRLGHPSISIVKQVVRSCNPKVSTNAIMSFCHACAIGKHHAMPFSPSTTSYSAPLQLIVTDLWGPAYKLSTHG
V ND S SS ++ D+WH+RLGHP+ IV QV+ ST + S C AC +GK H +PF S T Y+ PLQL+V+DLWGPA S++G
Subjt: LPCVSNDVSALYSSVQSSNNLSIDVWHQRLGHPSISIVKQVVRSCNPKVSTNAIMSFCHACAIGKHHAMPFSPSTTSYSAPLQLIVTDLWGPAYKLSTHG
Query: FQYYISFVDAFSRYTWIYFLQTKSEAFQAFLKFKTHVEKQFGTPIVSFKL----------------------------MENGIVERKHRHIVDVGLTLLS
F YY+SFVDA+SRYTW+YFL+TKS+ +AFL FK E QFG + +F+ +NGI+ERKHRHIV++GLTLL+
Subjt: FQYYISFVDAFSRYTWIYFLQTKSEAFQAFLKFKTHVEKQFGTPIVSFKL----------------------------MENGIVERKHRHIVDVGLTLLS
Query: HSSIPLTFWDDAFSTSVYLINRLPSIVLGGMSPLEKLFRKQPDYSTLKVFGCKCFPCLRPYNSHKLSFRSSPCTFIGYSHIHKGYKCLSSDGRLYISRHV
+S+PL +W DAFST+V+LINRLP+ VL P E LF +P+YS LKVFGC CFP LRPYN HKL FRSSPCTF+GYS HKGYKCL+ GR++ISR V
Subjt: HSSIPLTFWDDAFSTSVYLINRLPSIVLGGMSPLEKLFRKQPDYSTLKVFGCKCFPCLRPYNSHKLSFRSSPCTFIGYSHIHKGYKCLSSDGRLYISRHV
Query: LFDENSFPFA-------SLTSHSSVSPNCV-------------TQSLPTLSSVSSSTTVES----------------SSDAHLSISETSSIPST------
+FDE FPFA + SHS+V C+ + SLPT S+ SS E+ SS ++E++SIPS+
Subjt: LFDENSFPFA-------SLTSHSSVSPNCV-------------TQSLPTLSSVSSSTTVES----------------SSDAHLSISETSSIPST------
Query: ---------ADHPTN--NSPSPCFLNRTHHMITRSKRGIFKPKAFLATFVDVEPPNVKETLKCSHWKQAMQDEYDAL
+D P N+ F + HHM+TRSK GIFKPK + EP +E + WK+AM +E+ AL
Subjt: ---------ADHPTN--NSPSPCFLNRTHHMITRSKRGIFKPKAFLATFVDVEPPNVKETLKCSHWKQAMQDEYDAL
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| RVW80632.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera] | 3.1e-132 | 38.06 | Show/hide |
Query: KLTDENFLMWKFQILTALEGHDLDDHISGDSQPLPELIQVSENATTVSKPNPAYKVWKKQDKLVSSWIVGSMSESILEQVLH------------------
KL + NFL+W+ QILT L GH L H ++ LP +S + T + NP ++ W++QD+L+ SW++ S+++++L ++++
Subjt: KLTDENFLMWKFQILTALEGHDLDDHISGDSQPLPELIQVSENATTVSKPNPAYKVWKKQDKLVSSWIVGSMSESILEQVLH------------------
Query: -------------------------------------------------------------------------YVV----ALLLTHESRIESKSVINSDN
Y V LLL ESRIE K++ +D
Subjt: -------------------------------------------------------------------------YVV----ALLLTHESRIESKSVINSDN
Query: VLPS-ANLAVQNVSQNSVPNPSPNSQQQNF------GNGRGRSRSNF---GQNRGGR-SWNNRNRPQCQLCNKIGHTAMKCYSRVQMPGAYATQF---NP
PS A+L N + + N +++ NF GNG R NF G+ R GR SW N+PQCQLC +IGH M+CY R +Q P
Subjt: VLPS-ANLAVQNVSQNSVPNPSPNSQQQNF------GNGRGRSRSNF---GQNRGGR-SWNNRNRPQCQLCNKIGHTAMKCYSRVQMPGAYATQF---NP
Query: PGQM----NPSGLNFSP--------------------------------------QQF-----------NGLAISHLGYASFTSS--NNHMFHLNNLLHV
G M NF P QF GL I H+G+ SF+SS + L LLHV
Subjt: PGQM----NPSGLNFSP--------------------------------------QQF-----------NGLAISHLGYASFTSS--NNHMFHLNNLLHV
Query: PSITKNLISVSQFAKDNAVFFEFHPTFCVVKDLATGRALLRGTLHEGLYRFNLPQPLPSLNTSVVRPETNTAVFSTLPCVSNDVSALYSSVQSSNNLSID
P ITKNL+SVS+FA DN VFFEFHPT C VKDL+T L+ G L GLY F+ NT + P N++ F++ S + +V +S+
Subjt: PSITKNLISVSQFAKDNAVFFEFHPTFCVVKDLATGRALLRGTLHEGLYRFNLPQPLPSLNTSVVRPETNTAVFSTLPCVSNDVSALYSSVQSSNNLSID
Query: VWHQRLGHPSISIVKQVVRSCNPKVSTNAIMSFCHACAIGKHHAMPFSPSTTSYSAPLQLIVTDLWGPAYKLSTHGFQYYISFVDAFSRYTWIYFLQTKS
+WH RLGHPS IV V+ CN C AC +GK H PF S +SY+ PL+LI TDLWGP S+HG QYYI F+DA+SR+TWIY L+ KS
Subjt: VWHQRLGHPSISIVKQVVRSCNPKVSTNAIMSFCHACAIGKHHAMPFSPSTTSYSAPLQLIVTDLWGPAYKLSTHGFQYYISFVDAFSRYTWIYFLQTKS
Query: EAFQAFLKFKTHVEKQFGTPIVS----------------------------FKLMENGIVERKHRHIVDVGLTLLSHSSIPLTFWDDAFSTSVYLINRLP
EAFQ FL FK+ VE Q G I + + +NG+ ERKHRHIV+ G+ LL+ +S+P +WD+AF TSVYLINRLP
Subjt: EAFQAFLKFKTHVEKQFGTPIVS----------------------------FKLMENGIVERKHRHIVDVGLTLLSHSSIPLTFWDDAFSTSVYLINRLP
Query: SIVLGGMSPLEKLFRKQPDYSTLKVFGCKCFPCLRPYNSHKLSFRSSPCTFIGYSHIHKGYKCLSSDGRLYISRHVLFDENSFPFA---------SLTSH
+ VL SPLE LF ++P YS LKVFGC C+P LRP+N HKL FRS PCTF+GYS HKGYKCLS +G + ISR V+FDE++FPFA S S
Subjt: SIVLGGMSPLEKLFRKQPDYSTLKVFGCKCFPCLRPYNSHKLSFRSSPCTFIGYSHIHKGYKCLSSDGRLYISRHVLFDENSFPFA---------SLTSH
Query: SSVSPNCVTQSLPTLSSVSSSTTVESSSDAHLSISETSSIPSTADHPTNNSPSPCFLNRTHHMITRSKRGIFKPKAFLATFVDVEPPNVKETLKCSHWKQ
SS S C T SLP L + SST+ +SS + SI +S + A P +S P +HHMITRSK GIFKPKA+L + P +V E L+ SHWKQ
Subjt: SSVSPNCVTQSLPTLSSVSSSTTVESSSDAHLSISETSSIPSTADHPTNNSPSPCFLNRTHHMITRSKRGIFKPKAFLATFVDVEPPNVKETLKCSHWKQ
Query: AMQDEYDAL
AM DEY AL
Subjt: AMQDEYDAL
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| TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] | 3.5e-152 | 41.48 | Show/hide |
Query: NSEISSGSQNGQIVNPGNKISTVKLTDENFLMWKFQILTALEGHDLDDHISGDSQPLPELI--QVSENATTVSKPNPAYKVWKKQDKLVSSWIVGSMSES
N+E S S QI GNKIS VKL D+ FL+WKFQILTALE +DL++ + +S+P + + S +A+ PNPAYKVWK+QD+L+SSW++GSMSE
Subjt: NSEISSGSQNGQIVNPGNKISTVKLTDENFLMWKFQILTALEGHDLDDHISGDSQPLPELI--QVSENATTVSKPNPAYKVWKKQDKLVSSWIVGSMSES
Query: ILEQVLH---------------------------------------------------------------------------------------------
IL Q+LH
Subjt: ILEQVLH---------------------------------------------------------------------------------------------
Query: --YVVALLLTHESRIESKSVINSDNVLPSANLAVQNVSQNSV------PNPSPNSQQQNFGNGRGRSRSNFGQNRGGRSWNNRNRPQCQLCNKIGHTAMK
V++LLLT ES+ ESK + S+ LPS N+ Q + + N N+ N GRG RSN G+ NRN+PQCQ+C K+G++A +
Subjt: --YVVALLLTHESRIESKSVINSDNVLPSANLAVQNVSQNSV------PNPSPNSQQQNFGNGRGRSRSNFGQNRGGRSWNNRNRPQCQLCNKIGHTAMK
Query: CYSRVQMPGAYATQFNPPG-QMNPSGLNFSPQQF------------------------------------------------NGLAISHLGYASFTSSN-
C+ R P + ++ ++P + + +N PQ +GL I+H G SF SS
Subjt: CYSRVQMPGAYATQFNPPG-QMNPSGLNFSPQQF------------------------------------------------NGLAISHLGYASFTSSN-
Query: -NHMFHLNNLLHVPSITKNLISVSQFAKDNAVFFEFHPTFCVVKDLATGRALLRGTLHEGLYRFNLPQPLPSLNTSVVRPETNT-AVFSTLPCVSNDVSA
F LNNLL VPSITKNLISVSQFAKDN VFFEFHPT C VKDL TG+ LL+G L++GLY+F + L+ S +NT VF+T+
Subjt: -NHMFHLNNLLHVPSITKNLISVSQFAKDNAVFFEFHPTFCVVKDLATGRALLRGTLHEGLYRFNLPQPLPSLNTSVVRPETNT-AVFSTLPCVSNDVSA
Query: LYSSVQSSNNLSIDVWHQRLGHPSISIVKQVVRSCNPKVSTNAIMSFCHACAIGKHHAMPFSPSTTSYSAPLQLIVTDLWGPAYKLSTHGFQYYISFVDA
V SN +D+WH+RLGHP + IVK V+ + T ++FC ACA+GKHHA+PFS S T Y+ PLQLI DLWGPA +S +GF+YYISFVDA
Subjt: LYSSVQSSNNLSIDVWHQRLGHPSISIVKQVVRSCNPKVSTNAIMSFCHACAIGKHHAMPFSPSTTSYSAPLQLIVTDLWGPAYKLSTHGFQYYISFVDA
Query: FSRYTWIYFLQTKSEAFQAFLKFKTHVEKQFGTPIVS----------------------------FKLMENGIVERKHRHIVDVGLTLLSHSSIPLTFWD
+SRYTWIYFL +KS+AF AF KFKT VEK G I S + +N IVERKHR+I+++GLTLLS +++PL+FWD
Subjt: FSRYTWIYFLQTKSEAFQAFLKFKTHVEKQFGTPIVS----------------------------FKLMENGIVERKHRHIVDVGLTLLSHSSIPLTFWD
Query: DAFSTSVYLINRLPSIVLGGMSPLEKLFRKQPDYSTLKVFGCKCFPCLRPYNSHKLSFRSSPCTFIGYSHIHKGYKCLSSDGRLYISRHVLFDENSFPFA
+AFSTSVYLINRLP+ VL +SPLEKLF ++P++ +L+VFGCKC+P LRPY SHKLS RS+PCTF+GYS HKGYKCL+SDGRL+ISRHVLFDENSFP+A
Subjt: DAFSTSVYLINRLPSIVLGGMSPLEKLFRKQPDYSTLKVFGCKCFPCLRPYNSHKLSFRSSPCTFIGYSHIHKGYKCLSSDGRLYISRHVLFDENSFPFA
Query: SLTSHSSVSPNCVTQSLPTLSSVSSSTTVESSSDAHLSISETSSIPSTADH
S SHSS+ P P L S+ S+ + + D T ++ DH
Subjt: SLTSHSSVSPNCVTQSLPTLSSVSSSTTVESSSDAHLSISETSSIPSTADH
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A438EA49 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 3.9e-133 | 35.76 | Show/hide |
Query: IVNPGNKISTVKLTDENFLMWKFQILTALEGHDLDDHISGDSQPLPELIQVSENATTVSKPNPAYKVWKKQDKLVSSWIVGSMSESILEQV---------
+++P +++ T++L D+NFLMWK+QI A+ G+ L+ + G Q P+++ + V PNP ++ +++QD L+ SW++ S+ + L QV
Subjt: IVNPGNKISTVKLTDENFLMWKFQILTALEGHDLDDHISGDSQPLPELIQVSENATTVSKPNPAYKVWKKQDKLVSSWIVGSMSESILEQV---------
Query: ---------------------------------------------------------LHYVVALLLTHESRIESKSVINSDNVLPSANLAVQNVSQ--NS
L YV + L+ HE RI K N +V ++ + + S NS
Subjt: ---------------------------------------------------------LHYVVALLLTHESRIESKSVINSDNVLPSANLAVQNVSQ--NS
Query: VPNPSPNSQQQNFGNGRGRSRSNFGQNRG---GRSWNNRNRPQCQLCNKIGHTAMKCYSRVQ------------MPGA----------------------
PS Q +N G +R +F NRG GR+ +PQCQLCNK GHT +C+ R PG
Subjt: VPNPSPNSQQQNFGNGRGRSRSNFGQNRG---GRSWNNRNRPQCQLCNKIGHTAMKCYSRVQ------------MPGA----------------------
Query: -YATQFNPP---------------------------------GQMNPSGLNFSPQ------QFNGLAISHLGYASFTSSN--NHMFHLNNLLHVPSITKN
Y Q N G +N SG ++ GL ISH+G + F SS+ N + L N+L VP+I KN
Subjt: -YATQFNPP---------------------------------GQMNPSGLNFSPQ------QFNGLAISHLGYASFTSSN--NHMFHLNNLLHVPSITKN
Query: LISVSQFAKDNAVFFEFHPTFCVVKDLATGRALLRGTLHEGLYRFNLPQPLPSLNTSV-VRPETNTAVFSTLPCVSNDVSALYSSVQSSNNLSIDVWHQR
L+SVSQFA+DN V+FEFHP C VKD + LL+G LH+GLY+FNL + L + + + + N V ND S SS ++ D+WH+R
Subjt: LISVSQFAKDNAVFFEFHPTFCVVKDLATGRALLRGTLHEGLYRFNLPQPLPSLNTSV-VRPETNTAVFSTLPCVSNDVSALYSSVQSSNNLSIDVWHQR
Query: LGHPSISIVKQVVRSCNPKVSTNAIMSFCHACAIGKHHAMPFSPSTTSYSAPLQLIVTDLWGPAYKLSTHGFQYYISFVDAFSRYTWIYFLQTKSEAFQA
LGHP+ IV QV+ ST + S C AC +GK H +PF S T Y+ PLQL+V+DLWGPA S++GF YY+SFVDA+SRYTW+YFL+TKS+ +A
Subjt: LGHPSISIVKQVVRSCNPKVSTNAIMSFCHACAIGKHHAMPFSPSTTSYSAPLQLIVTDLWGPAYKLSTHGFQYYISFVDAFSRYTWIYFLQTKSEAFQA
Query: FLKFKTHVEKQFGTPIVSFKL----------------------------MENGIVERKHRHIVDVGLTLLSHSSIPLTFWDDAFSTSVYLINRLPSIVLG
FL FK E QFG + +F+ +NGI+ERKHRHIV++GLTLL+ +S+PL +W DAFST+V+LINRLP+ VL
Subjt: FLKFKTHVEKQFGTPIVSFKL----------------------------MENGIVERKHRHIVDVGLTLLSHSSIPLTFWDDAFSTSVYLINRLPSIVLG
Query: GMSPLEKLFRKQPDYSTLKVFGCKCFPCLRPYNSHKLSFRSSPCTFIGYSHIHKGYKCLSSDGRLYISRHVLFDENSFPFA-------SLTSHSSVSPNC
P E LF +P+YS LKVFGC CFP LRPYN HKL FRSSPCTF+GYS HKGYKCL+ GR++ISR V+FDE FPFA + SHS+V C
Subjt: GMSPLEKLFRKQPDYSTLKVFGCKCFPCLRPYNSHKLSFRSSPCTFIGYSHIHKGYKCLSSDGRLYISRHVLFDENSFPFA-------SLTSHSSVSPNC
Query: V-------------TQSLPTLSSVSSSTTVES----------------SSDAHLSISETSSIPST---------------ADHPTN--NSPSPCFLNRTH
+ + SLPT S+ SS E+ SS ++E++SIPS+ +D P N+ F + H
Subjt: V-------------TQSLPTLSSVSSSTTVES----------------SSDAHLSISETSSIPST---------------ADHPTN--NSPSPCFLNRTH
Query: HMITRSKRGIFKPKAFLATFVDVEPPNVKETLKCSHWKQAMQDEYDAL
HM+TRSK GIFKPK + EP +E + WK+AM +E+ AL
Subjt: HMITRSKRGIFKPKAFLATFVDVEPPNVKETLKCSHWKQAMQDEYDAL
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| A0A438FJP6 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 9.1e-130 | 34.7 | Show/hide |
Query: IVNPGNKISTVKLTDENFLMWKFQILTALEGHDLDDHISGDSQPLPELIQVSENATTVSKPNPAYKVWKKQDKLVSSWIVGSMSESILEQV---------
+++P +++ T++L D+NFLMWK+QI A+ G+ L+ + G Q P+++ + V PNP ++ +++QD L+ SW++ S+ + L QV
Subjt: IVNPGNKISTVKLTDENFLMWKFQILTALEGHDLDDHISGDSQPLPELIQVSENATTVSKPNPAYKVWKKQDKLVSSWIVGSMSESILEQV---------
Query: --------------------------------------------------------------------------------------LHYVVALLLTHESR
L YV + L+ HE R
Subjt: --------------------------------------------------------------------------------------LHYVVALLLTHESR
Query: IESKSVINSDNVLPSANLAVQNVSQ--NSVPNPSPNSQQQNFGNGRGRSRSNFGQNRG---GRSWNNRNRPQCQLCNKIGHTAMKCYSRVQ---------
I K N +V ++ + + S NS PS Q +N G +R +F NRG GR+ +PQCQLCNK GHT +C+ R
Subjt: IESKSVINSDNVLPSANLAVQNVSQ--NSVPNPSPNSQQQNFGNGRGRSRSNFGQNRG---GRSWNNRNRPQCQLCNKIGHTAMKCYSRVQ---------
Query: ---MPGA-----------------------YATQFNPP---------------------------------GQMNPSGLNFSPQ------QFNGLAISHL
PG Y Q N G +N SG ++ GL ISH+
Subjt: ---MPGA-----------------------YATQFNPP---------------------------------GQMNPSGLNFSPQ------QFNGLAISHL
Query: GYASFTSSN--NHMFHLNNLLHVPSITKNLISVSQFAKDNAVFFEFHPTFCVVKDLATGRALLRGTLHEGLYRFNLPQPLPSLNTSV-VRPETNTAVFST
G + F SS+ N + L N+L VP+I KNL+SVSQFA+DN V+FEFHP C VKD + LL+G LH+GLY+FNL + L + + + + N
Subjt: GYASFTSSN--NHMFHLNNLLHVPSITKNLISVSQFAKDNAVFFEFHPTFCVVKDLATGRALLRGTLHEGLYRFNLPQPLPSLNTSV-VRPETNTAVFST
Query: LPCVSNDVSALYSSVQSSNNLSIDVWHQRLGHPSISIVKQVVRSCNPKVSTNAIMSFCHACAIGKHHAMPFSPSTTSYSAPLQLIVTDLWGPAYKLSTHG
V ND S SS ++ D+WH+RLGHP+ IV QV+ ST + S C AC +GK H +PF S T Y+ PLQL+V+DLWGPA S++G
Subjt: LPCVSNDVSALYSSVQSSNNLSIDVWHQRLGHPSISIVKQVVRSCNPKVSTNAIMSFCHACAIGKHHAMPFSPSTTSYSAPLQLIVTDLWGPAYKLSTHG
Query: FQYYISFVDAFSRYTWIYFLQTKSEAFQAFLKFKTHVEKQFGTPIVSFKL----------------------------MENGIVERKHRHIVDVGLTLLS
F YY+SFVDA+SRYTW+YFL+TKS+ +AFL FK E QFG + +F+ +NGI+ERKHRHIV++GLTLL+
Subjt: FQYYISFVDAFSRYTWIYFLQTKSEAFQAFLKFKTHVEKQFGTPIVSFKL----------------------------MENGIVERKHRHIVDVGLTLLS
Query: HSSIPLTFWDDAFSTSVYLINRLPSIVLGGMSPLEKLFRKQPDYSTLKVFGCKCFPCLRPYNSHKLSFRSSPCTFIGYSHIHKGYKCLSSDGRLYISRHV
+S+PL +W DAFST+V+LINRLP+ VL P E LF +P+YS LKVFGC CFP LRPYN HKL FRSSPCTF+GYS HKGYKCL+ GR++ISR V
Subjt: HSSIPLTFWDDAFSTSVYLINRLPSIVLGGMSPLEKLFRKQPDYSTLKVFGCKCFPCLRPYNSHKLSFRSSPCTFIGYSHIHKGYKCLSSDGRLYISRHV
Query: LFDENSFPFA-------SLTSHSSVSPNCV-------------TQSLPTLSSVSSSTTVES----------------SSDAHLSISETSSIPST------
+FDE FPFA + SHS+V C+ + SLPT S+ SS E+ SS ++E++SIPS+
Subjt: LFDENSFPFA-------SLTSHSSVSPNCV-------------TQSLPTLSSVSSSTTVES----------------SSDAHLSISETSSIPST------
Query: ---------ADHPTN--NSPSPCFLNRTHHMITRSKRGIFKPKAFLATFVDVEPPNVKETLKCSHWKQAMQDEYDAL
+D P N+ F + HHM+TRSK GIFKPK + EP +E + WK+AM +E+ AL
Subjt: ---------ADHPTN--NSPSPCFLNRTHHMITRSKRGIFKPKAFLATFVDVEPPNVKETLKCSHWKQAMQDEYDAL
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| A0A438H844 Retrovirus-related Pol polyprotein from transposon RE1 | 1.5e-132 | 38.06 | Show/hide |
Query: KLTDENFLMWKFQILTALEGHDLDDHISGDSQPLPELIQVSENATTVSKPNPAYKVWKKQDKLVSSWIVGSMSESILEQVLH------------------
KL + NFL+W+ QILT L GH L H ++ LP +S + T + NP ++ W++QD+L+ SW++ S+++++L ++++
Subjt: KLTDENFLMWKFQILTALEGHDLDDHISGDSQPLPELIQVSENATTVSKPNPAYKVWKKQDKLVSSWIVGSMSESILEQVLH------------------
Query: -------------------------------------------------------------------------YVV----ALLLTHESRIESKSVINSDN
Y V LLL ESRIE K++ +D
Subjt: -------------------------------------------------------------------------YVV----ALLLTHESRIESKSVINSDN
Query: VLPS-ANLAVQNVSQNSVPNPSPNSQQQNF------GNGRGRSRSNF---GQNRGGR-SWNNRNRPQCQLCNKIGHTAMKCYSRVQMPGAYATQF---NP
PS A+L N + + N +++ NF GNG R NF G+ R GR SW N+PQCQLC +IGH M+CY R +Q P
Subjt: VLPS-ANLAVQNVSQNSVPNPSPNSQQQNF------GNGRGRSRSNF---GQNRGGR-SWNNRNRPQCQLCNKIGHTAMKCYSRVQMPGAYATQF---NP
Query: PGQM----NPSGLNFSP--------------------------------------QQF-----------NGLAISHLGYASFTSS--NNHMFHLNNLLHV
G M NF P QF GL I H+G+ SF+SS + L LLHV
Subjt: PGQM----NPSGLNFSP--------------------------------------QQF-----------NGLAISHLGYASFTSS--NNHMFHLNNLLHV
Query: PSITKNLISVSQFAKDNAVFFEFHPTFCVVKDLATGRALLRGTLHEGLYRFNLPQPLPSLNTSVVRPETNTAVFSTLPCVSNDVSALYSSVQSSNNLSID
P ITKNL+SVS+FA DN VFFEFHPT C VKDL+T L+ G L GLY F+ NT + P N++ F++ S + +V +S+
Subjt: PSITKNLISVSQFAKDNAVFFEFHPTFCVVKDLATGRALLRGTLHEGLYRFNLPQPLPSLNTSVVRPETNTAVFSTLPCVSNDVSALYSSVQSSNNLSID
Query: VWHQRLGHPSISIVKQVVRSCNPKVSTNAIMSFCHACAIGKHHAMPFSPSTTSYSAPLQLIVTDLWGPAYKLSTHGFQYYISFVDAFSRYTWIYFLQTKS
+WH RLGHPS IV V+ CN C AC +GK H PF S +SY+ PL+LI TDLWGP S+HG QYYI F+DA+SR+TWIY L+ KS
Subjt: VWHQRLGHPSISIVKQVVRSCNPKVSTNAIMSFCHACAIGKHHAMPFSPSTTSYSAPLQLIVTDLWGPAYKLSTHGFQYYISFVDAFSRYTWIYFLQTKS
Query: EAFQAFLKFKTHVEKQFGTPIVS----------------------------FKLMENGIVERKHRHIVDVGLTLLSHSSIPLTFWDDAFSTSVYLINRLP
EAFQ FL FK+ VE Q G I + + +NG+ ERKHRHIV+ G+ LL+ +S+P +WD+AF TSVYLINRLP
Subjt: EAFQAFLKFKTHVEKQFGTPIVS----------------------------FKLMENGIVERKHRHIVDVGLTLLSHSSIPLTFWDDAFSTSVYLINRLP
Query: SIVLGGMSPLEKLFRKQPDYSTLKVFGCKCFPCLRPYNSHKLSFRSSPCTFIGYSHIHKGYKCLSSDGRLYISRHVLFDENSFPFA---------SLTSH
+ VL SPLE LF ++P YS LKVFGC C+P LRP+N HKL FRS PCTF+GYS HKGYKCLS +G + ISR V+FDE++FPFA S S
Subjt: SIVLGGMSPLEKLFRKQPDYSTLKVFGCKCFPCLRPYNSHKLSFRSSPCTFIGYSHIHKGYKCLSSDGRLYISRHVLFDENSFPFA---------SLTSH
Query: SSVSPNCVTQSLPTLSSVSSSTTVESSSDAHLSISETSSIPSTADHPTNNSPSPCFLNRTHHMITRSKRGIFKPKAFLATFVDVEPPNVKETLKCSHWKQ
SS S C T SLP L + SST+ +SS + SI +S + A P +S P +HHMITRSK GIFKPKA+L + P +V E L+ SHWKQ
Subjt: SSVSPNCVTQSLPTLSSVSSSTTVESSSDAHLSISETSSIPSTADHPTNNSPSPCFLNRTHHMITRSKRGIFKPKAFLATFVDVEPPNVKETLKCSHWKQ
Query: AMQDEYDAL
AM DEY AL
Subjt: AMQDEYDAL
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| A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 3.8e-152 | 41.48 | Show/hide |
Query: NSEISSGSQNGQIVNPGNKISTVKLTDENFLMWKFQILTALEGHDLDDHISGDSQPLPELI--QVSENATTVSKPNPAYKVWKKQDKLVSSWIVGSMSES
N+E S S QI GNKIS VKL D+ FL+WKFQILTALE +DL++ + +S+P + + S +A+ PNPAYKVWK+QD+L+SSW++GSMSE
Subjt: NSEISSGSQNGQIVNPGNKISTVKLTDENFLMWKFQILTALEGHDLDDHISGDSQPLPELI--QVSENATTVSKPNPAYKVWKKQDKLVSSWIVGSMSES
Query: ILEQVLH---------------------------------------------------------------------------------------------
IL Q+LH
Subjt: ILEQVLH---------------------------------------------------------------------------------------------
Query: --YVVALLLTHESRIESKSVINSDNVLPSANLAVQNVSQNSV------PNPSPNSQQQNFGNGRGRSRSNFGQNRGGRSWNNRNRPQCQLCNKIGHTAMK
V++LLLT ES+ ESK + S+ LPS N+ Q + + N N+ N GRG RSN G+ NRN+PQCQ+C K+G++A +
Subjt: --YVVALLLTHESRIESKSVINSDNVLPSANLAVQNVSQNSV------PNPSPNSQQQNFGNGRGRSRSNFGQNRGGRSWNNRNRPQCQLCNKIGHTAMK
Query: CYSRVQMPGAYATQFNPPG-QMNPSGLNFSPQQF------------------------------------------------NGLAISHLGYASFTSSN-
C+ R P + ++ ++P + + +N PQ +GL I+H G SF SS
Subjt: CYSRVQMPGAYATQFNPPG-QMNPSGLNFSPQQF------------------------------------------------NGLAISHLGYASFTSSN-
Query: -NHMFHLNNLLHVPSITKNLISVSQFAKDNAVFFEFHPTFCVVKDLATGRALLRGTLHEGLYRFNLPQPLPSLNTSVVRPETNT-AVFSTLPCVSNDVSA
F LNNLL VPSITKNLISVSQFAKDN VFFEFHPT C VKDL TG+ LL+G L++GLY+F + L+ S +NT VF+T+
Subjt: -NHMFHLNNLLHVPSITKNLISVSQFAKDNAVFFEFHPTFCVVKDLATGRALLRGTLHEGLYRFNLPQPLPSLNTSVVRPETNT-AVFSTLPCVSNDVSA
Query: LYSSVQSSNNLSIDVWHQRLGHPSISIVKQVVRSCNPKVSTNAIMSFCHACAIGKHHAMPFSPSTTSYSAPLQLIVTDLWGPAYKLSTHGFQYYISFVDA
V SN +D+WH+RLGHP + IVK V+ + T ++FC ACA+GKHHA+PFS S T Y+ PLQLI DLWGPA +S +GF+YYISFVDA
Subjt: LYSSVQSSNNLSIDVWHQRLGHPSISIVKQVVRSCNPKVSTNAIMSFCHACAIGKHHAMPFSPSTTSYSAPLQLIVTDLWGPAYKLSTHGFQYYISFVDA
Query: FSRYTWIYFLQTKSEAFQAFLKFKTHVEKQFGTPIVS----------------------------FKLMENGIVERKHRHIVDVGLTLLSHSSIPLTFWD
+SRYTWIYFL +KS+AF AF KFKT VEK G I S + +N IVERKHR+I+++GLTLLS +++PL+FWD
Subjt: FSRYTWIYFLQTKSEAFQAFLKFKTHVEKQFGTPIVS----------------------------FKLMENGIVERKHRHIVDVGLTLLSHSSIPLTFWD
Query: DAFSTSVYLINRLPSIVLGGMSPLEKLFRKQPDYSTLKVFGCKCFPCLRPYNSHKLSFRSSPCTFIGYSHIHKGYKCLSSDGRLYISRHVLFDENSFPFA
+AFSTSVYLINRLP+ VL +SPLEKLF ++P++ +L+VFGCKC+P LRPY SHKLS RS+PCTF+GYS HKGYKCL+SDGRL+ISRHVLFDENSFP+A
Subjt: DAFSTSVYLINRLPSIVLGGMSPLEKLFRKQPDYSTLKVFGCKCFPCLRPYNSHKLSFRSSPCTFIGYSHIHKGYKCLSSDGRLYISRHVLFDENSFPFA
Query: SLTSHSSVSPNCVTQSLPTLSSVSSSTTVESSSDAHLSISETSSIPSTADH
S SHSS +P P L S+ S+ + + D T ++ DH
Subjt: SLTSHSSVSPNCVTQSLPTLSSVSSSTTVESSSDAHLSISETSSIPSTADH
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| A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.7e-152 | 41.48 | Show/hide |
Query: NSEISSGSQNGQIVNPGNKISTVKLTDENFLMWKFQILTALEGHDLDDHISGDSQPLPELI--QVSENATTVSKPNPAYKVWKKQDKLVSSWIVGSMSES
N+E S S QI GNKIS VKL D+ FL+WKFQILTALE +DL++ + +S+P + + S +A+ PNPAYKVWK+QD+L+SSW++GSMSE
Subjt: NSEISSGSQNGQIVNPGNKISTVKLTDENFLMWKFQILTALEGHDLDDHISGDSQPLPELI--QVSENATTVSKPNPAYKVWKKQDKLVSSWIVGSMSES
Query: ILEQVLH---------------------------------------------------------------------------------------------
IL Q+LH
Subjt: ILEQVLH---------------------------------------------------------------------------------------------
Query: --YVVALLLTHESRIESKSVINSDNVLPSANLAVQNVSQNSV------PNPSPNSQQQNFGNGRGRSRSNFGQNRGGRSWNNRNRPQCQLCNKIGHTAMK
V++LLLT ES+ ESK + S+ LPS N+ Q + + N N+ N GRG RSN G+ NRN+PQCQ+C K+G++A +
Subjt: --YVVALLLTHESRIESKSVINSDNVLPSANLAVQNVSQNSV------PNPSPNSQQQNFGNGRGRSRSNFGQNRGGRSWNNRNRPQCQLCNKIGHTAMK
Query: CYSRVQMPGAYATQFNPPG-QMNPSGLNFSPQQF------------------------------------------------NGLAISHLGYASFTSSN-
C+ R P + ++ ++P + + +N PQ +GL I+H G SF SS
Subjt: CYSRVQMPGAYATQFNPPG-QMNPSGLNFSPQQF------------------------------------------------NGLAISHLGYASFTSSN-
Query: -NHMFHLNNLLHVPSITKNLISVSQFAKDNAVFFEFHPTFCVVKDLATGRALLRGTLHEGLYRFNLPQPLPSLNTSVVRPETNT-AVFSTLPCVSNDVSA
F LNNLL VPSITKNLISVSQFAKDN VFFEFHPT C VKDL TG+ LL+G L++GLY+F + L+ S +NT VF+T+
Subjt: -NHMFHLNNLLHVPSITKNLISVSQFAKDNAVFFEFHPTFCVVKDLATGRALLRGTLHEGLYRFNLPQPLPSLNTSVVRPETNT-AVFSTLPCVSNDVSA
Query: LYSSVQSSNNLSIDVWHQRLGHPSISIVKQVVRSCNPKVSTNAIMSFCHACAIGKHHAMPFSPSTTSYSAPLQLIVTDLWGPAYKLSTHGFQYYISFVDA
V SN +D+WH+RLGHP + IVK V+ + T ++FC ACA+GKHHA+PFS S T Y+ PLQLI DLWGPA +S +GF+YYISFVDA
Subjt: LYSSVQSSNNLSIDVWHQRLGHPSISIVKQVVRSCNPKVSTNAIMSFCHACAIGKHHAMPFSPSTTSYSAPLQLIVTDLWGPAYKLSTHGFQYYISFVDA
Query: FSRYTWIYFLQTKSEAFQAFLKFKTHVEKQFGTPIVS----------------------------FKLMENGIVERKHRHIVDVGLTLLSHSSIPLTFWD
+SRYTWIYFL +KS+AF AF KFKT VEK G I S + +N IVERKHR+I+++GLTLLS +++PL+FWD
Subjt: FSRYTWIYFLQTKSEAFQAFLKFKTHVEKQFGTPIVS----------------------------FKLMENGIVERKHRHIVDVGLTLLSHSSIPLTFWD
Query: DAFSTSVYLINRLPSIVLGGMSPLEKLFRKQPDYSTLKVFGCKCFPCLRPYNSHKLSFRSSPCTFIGYSHIHKGYKCLSSDGRLYISRHVLFDENSFPFA
+AFSTSVYLINRLP+ VL +SPLEKLF ++P++ +L+VFGCKC+P LRPY SHKLS RS+PCTF+GYS HKGYKCL+SDGRL+ISRHVLFDENSFP+A
Subjt: DAFSTSVYLINRLPSIVLGGMSPLEKLFRKQPDYSTLKVFGCKCFPCLRPYNSHKLSFRSSPCTFIGYSHIHKGYKCLSSDGRLYISRHVLFDENSFPFA
Query: SLTSHSSVSPNCVTQSLPTLSSVSSSTTVESSSDAHLSISETSSIPSTADH
S SHSS+ P P L S+ S+ + + D T ++ DH
Subjt: SLTSHSSVSPNCVTQSLPTLSSVSSSTTVESSSDAHLSISETSSIPSTADH
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| SwissProt top hits | e value | %identity | Alignment |
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| P04146 Copia protein | 8.5e-16 | 20.1 | Show/hide |
Query: DKLVSSWIVGSMSESILEQVLHYVVALLLTHESRIESKSVINSDNV---LPSANLAVQNVS-QNSVPNPSPNSQQQNFGNGRGRSRSNFGQNRGGR----
D+L+S + ++++ H ++ L ++ I + ++ +N+ L Q + +N + S N ++N +NR +
Subjt: DKLVSSWIVGSMSESILEQVLHYVVALLLTHESRIESKSVINSDNV---LPSANLAVQNVS-QNSVPNPSPNSQQQNFGNGRGRSRSNFGQNRGGR----
Query: -SWNNRNRPQCQLCNKIGHTAMKCYSRVQMPGAYATQFNPPGQMNPS-GLNFSPQQFNGLAI-SHLGYASFTSSNNHMFHLNNLLH-----VPSITKNLI
N++ + +C C + GH C+ ++ + Q S G+ F ++ N ++ + G+ + +++H+ + +L VP + +
Subjt: -SWNNRNRPQCQLCNKIGHTAMKCYSRVQMPGAYATQFNPPGQMNPS-GLNFSPQQFNGLAI-SHLGYASFTSSNNHMFHLNNLLH-----VPSITKNLI
Query: SVSQF-----------AKDNAVFFEFHPTFCVVKDLATGRALLRGTLHEGLYRFNLPQPLPSLNTSVVRPETNTAVFSTLPCVSNDVSALYSSVQSSNNL
+F D+ + E FC A G + L E + +++ + + N+ + + +P ++ S+ + +
Subjt: SVSQF-----------AKDNAVFFEFHPTFCVVKDLATGRALLRGTLHEGLYRFNLPQPLPSLNTSVVRPETNTAVFSTLPCVSNDVSALYSSVQSSNNL
Query: SIDVWHQRLGHPSISIVKQVVRS---CNPKVSTNAIMS--FCHACAIGKHHAMPFS--PSTTSYSAPLQLIVTDLWGPAYKLSTHGFQYYISFVDAFSRY
+ +WH+R GH S + ++ R + + N +S C C GK +PF T PL ++ +D+ GP ++ Y++ FVD F+ Y
Subjt: SIDVWHQRLGHPSISIVKQVVRS---CNPKVSTNAIMS--FCHACAIGKHHAMPFS--PSTTSYSAPLQLIVTDLWGPAYKLSTHGFQYYISFVDAFSRY
Query: TWIYFLQTKSEAFQAFLKFKTHVEKQFGTPIV------------------------SFKL------MENGIVERKHRHIVDVGLTLLSHSSIPLTFWDDA
Y ++ KS+ F F F E F +V S+ L NG+ ER R I + T++S + + +FW +A
Subjt: TWIYFLQTKSEAFQAFLKFKTHVEKQFGTPIV------------------------SFKL------MENGIVERKHRHIVDVGLTLLSHSSIPLTFWDDA
Query: FSTSVYLINRLPS--IVLGGMSPLEKLFRKQPDYSTLKVFGCKCFPCLRPYNSHKLSFRSSPCTFIGYSHIHKGYKCLSS-DGRLYISRHVLFDENS
T+ YLINR+PS +V +P E K+P L+VFG + ++ K +S F+GY G+K + + + ++R V+ DE +
Subjt: FSTSVYLINRLPS--IVLGGMSPLEKLFRKQPDYSTLKVFGCKCFPCLRPYNSHKLSFRSSPCTFIGYSHIHKGYKCLSS-DGRLYISRHVLFDENS
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 3.0e-37 | 26.74 | Show/hide |
Query: LNNLLHVPSITKNLISVSQFAKDNAVFFEFHPTFCVVK-DLATGRALLRGTLHEGLYRFNLPQPLPSLNTSVVRPETNTAVFSTLPCVSNDVSALYSSVQ
L ++ HVP + NLIS +D + + + + K L + + RGTL+ N + + E N A
Subjt: LNNLLHVPSITKNLISVSQFAKDNAVFFEFHPTFCVVK-DLATGRALLRGTLHEGLYRFNLPQPLPSLNTSVVRPETNTAVFSTLPCVSNDVSALYSSVQ
Query: SSNNLSIDVWHQRLGHPSISIVKQVVRSCNPKVSTNAIMSFCHACAIGKHHAMPFSPSTTSYSAPLQLIVTDLWGPAYKLSTHGFQYYISFVDAFSRYTW
+ +S+D+WH+R+GH S ++ + + + + C C GK H + F S+ L L+ +D+ GP S G +Y+++F+D SR W
Subjt: SSNNLSIDVWHQRLGHPSISIVKQVVRSCNPKVSTNAIMSFCHACAIGKHHAMPFSPSTTSYSAPLQLIVTDLWGPAYKLSTHGFQYYISFVDAFSRYTW
Query: IYFLQTKSEAFQAFLKFKTHVEKQFGTPIVSFKL------------------------------MENGIVERKHRHIVDVGLTLLSHSSIPLTFWDDAFS
+Y L+TK + FQ F KF VE++ G + + NG+ ER +R IV+ ++L + +P +FW +A
Subjt: IYFLQTKSEAFQAFLKFKTHVEKQFGTPIVSFKL------------------------------MENGIVERKHRHIVDVGLTLLSHSSIPLTFWDDAFS
Query: TSVYLINRLPSIVLGGMSPLEKLFRKQPDYSTLKVFGCKCFPCLRPYNSHKLSFRSSPCTFIGYSHIHKGYKCLSSDGRLYI-SRHVLFDENSFPFASLT
T+ YLINR PS+ L P K+ YS LKVFGC+ F + KL +S PC FIGY GY+ + I SR V+F E+ A+
Subjt: TSVYLINRLPSIVLGGMSPLEKLFRKQPDYSTLKVFGCKCFPCLRPYNSHKLSFRSSPCTFIGYSHIHKGYKCLSSDGRLYI-SRHVLFDENSFPFASLT
Query: SH---SSVSPNCVTQSLPTLSSVSSSTTVESSSDAHLSISETSSIP--------------STADHPTNNSPSPCFLNRTHHMITRSKRGIFKPKAFLATF
S + + PN VT +P+ S ++ T+ ES++D +SE P +HPT L R+ S+R + ++
Subjt: SH---SSVSPNCVTQSLPTLSSVSSSTTVESSSDAHLSISETSSIP--------------STADHPTNNSPSPCFLNRTHHMITRSKRGIFKPKAFLATF
Query: VDVEPPNVKETLKCSHWKQ---AMQDEYDAL
D EP ++KE L Q AMQ+E ++L
Subjt: VDVEPPNVKETLKCSHWKQ---AMQDEYDAL
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| Q12491 Transposon Ty2-B Gag-Pol polyprotein | 3.2e-07 | 21.51 | Show/hide |
Query: SGLNFSPQQFNGLAISHLGYASFTSSNNHMFHLNNLLHVPSITKNLISVSQFAKDNAVFFEFHPTFCVVK---DLATGRALLRGTLHEGLYRFNLPQPLP
S +N Q + I+ +G F N + LH P+I +L+S+S+ A N T C + + + G L H Y + +P
Subjt: SGLNFSPQQFNGLAISHLGYASFTSSNNHMFHLNNLLHVPSITKNLISVSQFAKDNAVFFEFHPTFCVVK---DLATGRALLRGTLHEGLYRFNLPQPLP
Query: SLNTSVVRPETNTAVFSTLPCVSNDVSALYSSVQSSNNLSIDVWHQRLGHPSI-SIVKQVVRSCNPKVS------TNAIMSFCHACAIGK----HHAMPF
S + + N + +S N + H+ LGH + SI K + ++ + +NA C C IGK H
Subjt: SLNTSVVRPETNTAVFSTLPCVSNDVSALYSSVQSSNNLSIDVWHQRLGHPSI-SIVKQVVRSCNPKVS------TNAIMSFCHACAIGK----HHAMPF
Query: SPSTTSYSAPLQLIVTDLWGPAYKLSTHGFQYYISFVDAFSRYTWIYFLQTKSE--AFQAFLKFKTHVEKQFGTPIVSFKL-------------------
P Q + TD++GP + L Y+ISF D +R+ W+Y L + E F ++ QF ++ ++
Subjt: SPSTTSYSAPLQLIVTDLWGPAYKLSTHGFQYYISFVDAFSRYTWIYFLQTKSE--AFQAFLKFKTHVEKQFGTPIVSFKL-------------------
Query: -----------MENGIVERKHRHIVDVGLTLLSHSSIPLTFWDDAFSTSVYLINRLPS
+G+ ER +R +++ TLL S +P W A S + N L S
Subjt: -----------MENGIVERKHRHIVDVGLTLLSHSSIPLTFWDDAFSTSVYLINRLPS
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 3.3e-76 | 30 | Show/hide |
Query: NGQIVNPGNKISTVKLTDENFLMWKFQILTALEGHDLDDHISGDSQPLPELIQVSENATTVSKPNPAYKVWKKQDKLVSSWIVGSMSESILEQVLHYV--
N I+N N + KLT N+LMW Q+ +G++L + G + P I + NP Y WK+QDKL+ S ++G++S S+ V
Subjt: NGQIVNPGNKISTVKLTDENFLMWKFQILTALEGHDLDDHISGDSQPLPELIQVSENATTVSKPNPAYKVWKKQDKLVSSWIVGSMSESILEQVLHYV--
Query: -------------------------------------------------VALL---LTHESRIES---------KSVI---------------------N
+ALL + H+ ++E K VI +
Subjt: -------------------------------------------------VALL---LTHESRIES---------KSVI---------------------N
Query: SDNVLPSANLAVQNVSQNSVPNPSPNSQQQNFGNGRGRSRSNFGQNRGGRSW----------NNRNRP---QCQLCNKIGHTAMKCYSRVQMPGAYATQF
+L ++ V ++ N+V + + + N R N N + W NN+++P +CQ+C GH+A +C S++Q +
Subjt: SDNVLPSANLAVQNVSQNSVPNPSPNSQQQNFGNGRGRSRSNFGQNRGGRSW----------NNRNRP---QCQLCNKIGHTAMKCYSRVQMPGAYATQF
Query: NPPGQMNP----------------------SGLNFSPQQFNGLA--------------------ISHLGYASFTSSNNHMFHLNNLLHVPSITKNLISVS
PP P + FN L+ ISH G S S+ + +L+N+L+VP+I KNLISV
Subjt: NPPGQMNP----------------------SGLNFSPQQFNGLA--------------------ISHLGYASFTSSNNHMFHLNNLLHVPSITKNLISVS
Query: QFAKDNAVFFEFHPTFCVVKDLATGRALLRGTLHEGLYRFNLPQPLPSLNTSVVRPETNTAVFSTLPCVSNDVSALYSSVQSSNNLSIDVWHQRLGHPSI
+ N V EF P VKDL TG LL+G + LY + P S+ +L++S S+ + WH RLGHP+
Subjt: QFAKDNAVFFEFHPTFCVVKDLATGRALLRGTLHEGLYRFNLPQPLPSLNTSVVRPETNTAVFSTLPCVSNDVSALYSSVQSSNNLSIDVWHQRLGHPSI
Query: SIVKQVVRSCNPKV--STNAIMSFCHACAIGKHHAMPFSPSTTSYSAPLQLIVTDLWGPAYKLSTHGFQYYISFVDAFSRYTWIYFLQTKSEAFQAFLKF
SI+ V+ + + V ++ +S C C I K + +PFS ST + + PL+ I +D+W LS ++YY+ FVD F+RYTW+Y L+ KS+ + F+ F
Subjt: SIVKQVVRSCNPKV--STNAIMSFCHACAIGKHHAMPFSPSTTSYSAPLQLIVTDLWGPAYKLSTHGFQYYISFVDAFSRYTWIYFLQTKSEAFQAFLKF
Query: KTHVEKQFGTPIVSF---------KLME-------------------NGIVERKHRHIVDVGLTLLSHSSIPLTFWDDAFSTSVYLINRLPSIVLGGMSP
K +E +F T I +F L E NG+ ERKHRHIV+ GLTLLSH+SIP T+W AF+ +VYLINRLP+ +L SP
Subjt: KTHVEKQFGTPIVSF---------KLME-------------------NGIVERKHRHIVDVGLTLLSHSSIPLTFWDDAFSTSVYLINRLPSIVLGGMSP
Query: LEKLFRKQPDYSTLKVFGCKCFPCLRPYNSHKLSFRSSPCTFIGYSHIHKGYKCLS-SDGRLYISRHVLFDENSFPFAS-LTSHSSV-----SPNCVTQS
+KLF P+Y L+VFGC C+P LRPYN HKL +S C F+GYS Y CL RLYISRHV FDEN FPF++ L + S V +CV
Subjt: LEKLFRKQPDYSTLKVFGCKCFPCLRPYNSHKLSFRSSPCTFIGYSHIHKGYKCLS-SDGRLYISRHVLFDENSFPFAS-LTSHSSV-----SPNCVTQS
Query: LPTLSSVSSSTTVESSSDAHLSISETSSIPSTADHPTNNS
TL + + S SD H ++ PS+ P NS
Subjt: LPTLSSVSSSTTVESSSDAHLSISETSSIPSTADHPTNNS
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 2.0e-81 | 31.21 | Show/hide |
Query: NGQIVNPGNKISTVKLTDENFLMWKFQILTALEGHDLDDHISGDSQPLPELIQVSENATTVSKPNPAYKVWKKQDKLVSSWIVGSMSESI----------
N I+N N + KLT N+LMW Q+ +G++L + G S P+P + V + NP Y W++QDKL+ S I+G++S S+
Subjt: NGQIVNPGNKISTVKLTDENFLMWKFQILTALEGHDLDDHISGDSQPLPELIQVSENATTVSKPNPAYKVWKKQDKLVSSWIVGSMSESI----------
Query: -------------------------------------------LEQVLHYV-----------------VALLLTHESRIESKS---VINSDNVLPSANLA
+E+VL + +L HE I +S +NS V+P
Subjt: -------------------------------------------LEQVLHYV-----------------VALLLTHESRIESKS---VINSDNVLPSANLA
Query: VQNVSQNSVPNPSPNSQQQNFGNGRGRSRSNFGQNRGGRSWNNRNRP---QCQLCNKIGHTAMKCYSRVQMPG--------------------AYATQFN
V + + N+ N + +N+ N RS S + G RS N + +P +CQ+C+ GH+A +C Q A + +N
Subjt: VQNVSQNSVPNPSPNSQQQNFGNGRGRSRSNFGQNRGGRSWNNRNRP---QCQLCNKIGHTAMKCYSRVQMPG--------------------AYATQFN
Query: PPGQMNPSG-LNFSPQQFNGLA--------------------ISHLGYASFTSSNNHMFHLNNLLHVPSITKNLISVSQFAKDNAVFFEFHPTFCVVKDL
+ SG + FN L+ I+H G AS +S+ + LN +L+VP+I KNLISV + N V EF P VKDL
Subjt: PPGQMNPSG-LNFSPQQFNGLA--------------------ISHLGYASFTSSNNHMFHLNNLLHVPSITKNLISVSQFAKDNAVFFEFHPTFCVVKDL
Query: ATGRALLRGTLHEGLYRFNLPQPLPSLNTSVVRPETNTAVFSTLPCVSNDVSALYSSVQSSNNLSIDVWHQRLGHPSISIVKQVVRSCN-PKVSTNAIMS
TG LL+G + LY + P S+ ++++S S S WH RLGHPS++I+ V+ + + P ++ + +
Subjt: ATGRALLRGTLHEGLYRFNLPQPLPSLNTSVVRPETNTAVFSTLPCVSNDVSALYSSVQSSNNLSIDVWHQRLGHPSISIVKQVVRSCN-PKVSTNAIMS
Query: FCHACAIGKHHAMPFSPSTTSYSAPLQLIVTDLWGPAYKLSTHGFQYYISFVDAFSRYTWIYFLQTKSEAFQAFLKFKTHVEKQFGTPIVS--------F
C C I K H +PFS ST + S PL+ I +D+W LS ++YY+ FVD F+RYTW+Y L+ KS+ F+ FK+ VE +F T I + F
Subjt: FCHACAIGKHHAMPFSPSTTSYSAPLQLIVTDLWGPAYKLSTHGFQYYISFVDAFSRYTWIYFLQTKSEAFQAFLKFKTHVEKQFGTPIVS--------F
Query: KLM--------------------ENGIVERKHRHIVDVGLTLLSHSSIPLTFWDDAFSTSVYLINRLPSIVLGGMSPLEKLFRKQPDYSTLKVFGCKCFP
++ NG+ ERKHRHIV++GLTLLSH+S+P T+W AFS +VYLINRLP+ +L SP +KLF + P+Y LKVFGC C+P
Subjt: KLM--------------------ENGIVERKHRHIVDVGLTLLSHSSIPLTFWDDAFSTSVYLINRLPSIVLGGMSPLEKLFRKQPDYSTLKVFGCKCFP
Query: CLRPYNSHKLSFRSSPCTFIGYSHIHKGYKCLS-SDGRLYISRHVLFDENSFPFASLT------------------SHSSV--------SPNCVTQSL--
LRPYN HKL +S C F+GYS Y CL GRLY SRHV FDE FPF++ SH+++ +P C+ L
Subjt: CLRPYNSHKLSFRSSPCTFIGYSHIHKGYKCLS-SDGRLYISRHVLFDENSFPFASLT------------------SHSSV--------SPNCVTQSL--
Query: ----PTLSSVSSSTTVESSSDAHLSISETSSIPSTADHPTNNSPSP
P+ S +T V SS+ SIS SS TA P++N P P
Subjt: ----PTLSSVSSSTTVESSSDAHLSISETSSIPSTADHPTNNSPSP
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