CuGenDBv2

Gene ID	Lag0005153
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	DNA-directed RNA polymerase III subunit RPC8
Genome location	chr6:11265090..11269196
RNA-Seq Expression	Lag0005153
Synteny	Lag0005153
Gene Ontology terms	GO:0006384 - transcription initiation from RNA polymerase III promoter (biological process) GO:0008380 - RNA splicing (biological process) GO:0005666 - RNA polymerase III complex (cellular component) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR005576 - RNA polymerase Rpb7-like , N-terminal IPR012340 - Nucleic acid-binding, OB-fold IPR013238 - RNA polymerase III, subunit Rpc25 IPR036898 - RNA polymerase Rpb7-like, N-terminal domain superfamily IPR045113 - RNA polymerase Rpb7-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7014295.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita argyrosperma subsp. argyrosperma]

1.7e-115

92.89

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRP+ GEIIIGKVKESDANGLRIS
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHNIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY
        LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIH+I+YPAIPV +QP ESNSKF MEEQPKE+ NVK FAPM+VTATIDY
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHNIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY

Query:  DGLGPVSWWDGSGDADA--EVEEDS
        DGLGPVSWWDGSGDADA  E EEDS
Subjt:  DGLGPVSWWDGSGDADA--EVEEDS

XP_022152296.1 DNA-directed RNA polymerase III subunit RPC8 isoform X2 [Momordica charantia]

1.8e-114

94.57

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRP+VGEIIIGKVKESDANGLRIS
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHNIEYPAIPVEQPKESNSKFPMEE-QPKEST-NVKAFAPMIVTATID
        LGFFEDIYVPIHLLP+PSEFKPD KNGGKRRWVWDYDGQPYDIYETDEIKFRIHNIEYPAIPVEQPKESN KF  EE QPKEST NVKAFAPMIVT TID
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHNIEYPAIPVEQPKESNSKFPMEE-QPKEST-NVKAFAPMIVTATID

Query:  YDGLGPVSWWDGSGDADAEVE
        YDGLGPVSWWDGSGD D E E
Subjt:  YDGLGPVSWWDGSGDADAEVE

XP_022954042.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita moschata]

2.8e-115

92.07

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRP+ GEIIIGKVKESDANGLRIS
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHNIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY
        LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIH+I+YPAIPV +QP ESNSKF MEEQPKE+ NVK FAPM+VTATIDY
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHNIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY

Query:  DGLGPVSWWDGSGDAD----AEVEEDS
        DGLGPVSWWDGSGDAD    AE EEDS
Subjt:  DGLGPVSWWDGSGDAD----AEVEEDS

XP_022991804.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita maxima]

4.8e-115

91.93

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRP+ GEIIIGKVKESDANGLRIS
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHNIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY
        LGFFEDIYVPIHLLPSPSEFKPDPKN GKRRWVWDYDGQPYDIYETDEIKFRIH+I+YP IPV +QP ESNSKF MEEQPKE+ NVK FAPM+VTATIDY
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHNIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY

Query:  DGLGPVSWWDGSGDADAEVEEDS
        DGLGPVSWWDGSGDADAE E ++
Subjt:  DGLGPVSWWDGSGDADAEVEEDS

XP_023547503.1 DNA-directed RNA polymerase III subunit RPC8 [Cucurbita pepo subsp. pepo]

3.3e-116

93.33

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRP+ GEIIIGKVKESDANGLRIS
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHNIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY
        LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIH+I+YPAIPV +QP ESNSKF MEEQPKE+ NVK FAPM+VTATIDY
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHNIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY

Query:  DGLGPVSWWDGSG--DADAEVEEDS
        DGLGPVSWWDGSG  DADAE EEDS
Subjt:  DGLGPVSWWDGSG--DADAEVEEDS

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CEN6 DNA-directed RNA polymerase III subunit RPC8 isoform X1

3.2e-104

83.48

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MFYLSRIEHTLRVPPS+L+LPILDAIKGELEKLF+DKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPF GE+IIGKV+ES+ NGLRIS
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHNIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDYD
        LGFFEDIYVP+ L+PS SEF PD  NGG+RRWVW Y+  P+DIYE+DEIKF+IH+IEYPAI VEQPKESNSKFPMEE+PKES NVK FAPM++TA++D D
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHNIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDYD

Query:  GLGPVSWWDGSGDADA--EVEEDS
        GLGPVSWWDGSG+A+A  EVEEDS
Subjt:  GLGPVSWWDGSGDADA--EVEEDS

A0A5A7UWI5 DNA-directed RNA polymerase III subunit RPC8 isoform X1

3.2e-104

83.48

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MFYLSRIEHTLRVPPS+L+LPILDAIKGELEKLF+DKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPF GE+IIGKV+ES+ NGLRIS
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHNIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDYD
        LGFFEDIYVP+ L+PS SEF PD  NGG+RRWVW Y+  P+DIYE+DEIKF+IH+IEYPAI VEQPKESNSKFPMEE+PKES NVK FAPM++TA++D D
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHNIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDYD

Query:  GLGPVSWWDGSGDADA--EVEEDS
        GLGPVSWWDGSG+A+A  EVEEDS
Subjt:  GLGPVSWWDGSGDADA--EVEEDS

A0A6J1DFX3 DNA-directed RNA polymerase III subunit RPC8 isoform X2

8.8e-115

94.57

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRP+VGEIIIGKVKESDANGLRIS
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHNIEYPAIPVEQPKESNSKFPMEE-QPKEST-NVKAFAPMIVTATID
        LGFFEDIYVPIHLLP+PSEFKPD KNGGKRRWVWDYDGQPYDIYETDEIKFRIHNIEYPAIPVEQPKESN KF  EE QPKEST NVKAFAPMIVT TID
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHNIEYPAIPVEQPKESNSKFPMEE-QPKEST-NVKAFAPMIVTATID

Query:  YDGLGPVSWWDGSGDADAEVE
        YDGLGPVSWWDGSGD D E E
Subjt:  YDGLGPVSWWDGSGDADAEVE

A0A6J1GPX5 DNA-directed RNA polymerase III subunit RPC8

1.4e-115

92.07

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVA LGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRP+ GEIIIGKVKESDANGLRIS
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHNIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY
        LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIH+I+YPAIPV +QP ESNSKF MEEQPKE+ NVK FAPM+VTATIDY
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHNIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY

Query:  DGLGPVSWWDGSGDAD----AEVEEDS
        DGLGPVSWWDGSGDAD    AE EEDS
Subjt:  DGLGPVSWWDGSGDAD----AEVEEDS

A0A6J1JVU8 DNA-directed RNA polymerase III subunit RPC8

2.3e-115

91.93

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRP+ GEIIIGKVKESDANGLRIS
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHNIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY
        LGFFEDIYVPIHLLPSPSEFKPDPKN GKRRWVWDYDGQPYDIYETDEIKFRIH+I+YP IPV +QP ESNSKF MEEQPKE+ NVK FAPM+VTATIDY
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDEIKFRIHNIEYPAIPV-EQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDY

Query:  DGLGPVSWWDGSGDADAEVEEDS
        DGLGPVSWWDGSGDADAE E ++
Subjt:  DGLGPVSWWDGSGDADAEVEEDS

SwissProt top hits

e value

%identity

Alignment

O94285 DNA-directed RNA polymerase III subunit rpc8

3.8e-30

33.8

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MF LSR    + + PS    P  +A+  E+ K + +KV+ N+GL I VYD   +  G I   DG++   VVF LI+FRPF GE+++GK+K     G+R++
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQP--------YDIYETDEIKFRIHNIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMI
        + FF+DI++P  +L  P  F+PD     +R WVW  +G+         +DI E  EI+F+I + ++  I  ++ K + +    E        +++ +P  
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQP--------YDIYETDEIKFRIHNIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMI

Query:  VTATIDYDGLGPVSWW
        + A+   DGLG  +WW
Subjt:  VTATIDYDGLGPVSWW

P35718 DNA-directed RNA polymerase III subunit RPC8

7.1e-29

31.8

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MF LS+I   +R+PP   H   + AI  +L   F +K++ N+GLCI++YD+ +V+ G + P DG++   V F  +VF+PF+GEI+ G + +  A G+++S
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  -LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDE-IKFRIHNIEY----PAIPVEQPKESNSKFPMEEQPKESTNVKAFAP--MI
         LG F+DI++P ++L     + P+     +  W+W  D +    ++ +E I+FRI    +    P  P E+  E  ++   E + K     +   P    
Subjt:  -LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETDE-IKFRIHNIEY----PAIPVEQPKESNSKFPMEEQPKESTNVKAFAP--MI

Query:  VTATIDYDGLGPVSWWD
        +  +   DG+G VSWW+
Subjt:  VTATIDYDGLGPVSWWD

Q2T9X1 DNA-directed RNA polymerase III subunit RPC8

3.1e-32

34.88

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MF L  +  T+R+PP      + D+I  EL K   +KV+ N+GLCI ++DI  ++  ++FP DGA+  KV F  +VF PF+ EI+IGK+K     G+ +S
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQ--PYDIYET--DEIKFRIHNIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTAT
        LGFF+DI +P   L  P++F     +  ++ WVW+Y+ +   +D+Y    +E++FR+ +  +       P  + +    EE PK+       AP  +  +
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQ--PYDIYET--DEIKFRIHNIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTAT

Query:  IDYDGLGPVSWWDGS
        I   GLG +SWW  S
Subjt:  IDYDGLGPVSWWDGS

Q9D2C6 DNA-directed RNA polymerase III subunit RPC8

1.4e-32

35.85

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MF L  +  T+R+PP      + D+I  EL K   +KVV N+GLCI ++DI  ++  ++FP DGA+  KV F  +VF PF+ EI+IGK+K     G+ +S
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQ--PYDIY--ETDEIKFRIHNIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTAT
        LGFF+DI +P   L  P++F     +  ++ WVW+Y+ +   +D+Y    +EI+FR+ +  +       P  + +    EE PK+       AP  +  +
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQ--PYDIY--ETDEIKFRIHNIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTAT

Query:  IDYDGLGPVSWW
        I   GLG +SWW
Subjt:  IDYDGLGPVSWW

Q9Y535 DNA-directed RNA polymerase III subunit RPC8

1.1e-32

35.85

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MF L  +  T+R+PP      + D+I  EL K   +KVV N+GLCI ++DI  ++  ++FP DGA+  KV F  +VF PF+ EI+IGK+K     G+ +S
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQ--PYDIY--ETDEIKFRIHNIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTAT
        LGFF+DI +P   L  P++F     +  ++ WVW+Y+ +   +D+Y    +EI+FR+ +  +       P  +++    EE PK+       AP  +  +
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQ--PYDIY--ETDEIKFRIHNIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTAT

Query:  IDYDGLGPVSWW
        I   GLG +SWW
Subjt:  IDYDGLGPVSWW

Arabidopsis top hits

e value

%identity

Alignment

AT1G06790.1 RNA polymerase Rpb7 N-terminal domain-containing protein

6.8e-67

54.55

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MFYLS +EH+LRVPP +L+LP+ DAIK  L+ +FLDKV+A+LGLC+S+YDI+SV+GGF+ P DGAATYKV   ++VFRPFVGE+I  K KESDANGLR++
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETD---EIKFRIHNIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTATI
        LGFF+DIYVP  L+P P+  +PDP N  +  WVW+Y G+P + Y  D   +IKFR+ +I YP++P E+ +++                K FAPM+VT  +
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETD---EIKFRIHNIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTATI

Query:  DYDGLGPVSWWDGSGDADAE
        D DGLGPVSWWD     D E
Subjt:  DYDGLGPVSWWDGSGDADAE

AT1G06790.2 RNA polymerase Rpb7 N-terminal domain-containing protein

8.9e-59

53.77

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MFYLS +EH+LRVPP +L+LP+ DAIK  L+ +FLDKV+A+LGLC+S+YDI+SV+GGF+ P DGAATYKV   ++VFRPFVGE+I  K KESDANGLR++
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETD---EIKFRIHNIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTAT
        LGFF+DIYVP  L+P P+  +PDP N  +  WVW+Y G+P + Y  D   +IKFR+ +I YP++P E+ +++                K FAPM+VT +
Subjt:  LGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYDGQPYDIYETD---EIKFRIHNIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTAT

AT5G59180.1 DNA-directed RNA polymerase II

3.3e-05

26.19

Show/hide

Query:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS
        MF+   +E  +++ P      + + +  +L K          G  +++  I ++  G I    G  T+ V +  +VFRPF GEI+   V       L   
Subjt:  MFYLSRIEHTLRVPPSMLHLPILDAIKGELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRIS

Query:  LGFFED-----IYVPIHLLPSPSEFK
        +GFF +     I+V  HL+P   EF+
Subjt:  LGFFED-----IYVPIHLLPSPSEFK

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCCTAAAGCAATCAGCCAACTCCATCTTCCTCATCCCTTTCTCCTCTTCATACCCGACGGCAGCTTCTCCCTCTCAGCCCCATCTCCGGCGACGCGTTTCCTCCGGCC
AGCAGCGTCCTTCGCGTGTCTTCTCCGGCGAGTCCCACGGCGGCGCAGCGGCAGTGCGGTTCCGCGGCGCGTCGGCGAGGTTGCAGCAGTGAGTTCGGCAGCCGTGAAGA
GCCTCCCCCTGTGGTTTCGTCTCGTCCCGAGCTCGCCGTCGCCTGCAGTGATCGAGCGTCCTCTCTCCGGCGCCGGTGTCTTCTTCAACGAGCATTGCAGCCGCGTGGTC
GTCGGGTGGATTTGCAGCAGCCATTCAGCGCGTAAGCAGGGGTGGGATCTCGCGTTTGTTTTTGTTTCTCAAGCCGATTCCGGCGGTTGCAGCACCAAGTCGCGCGGCCA
GCAGTGTCTTGCGTGGGTTTCTTTTCCTGTTCTTTGTCGGCGTGGGTCTCTGAATTTCAGCGTATTGCTTTGGTTATATGTCAAAAAGAGAGGCTCCAAGAATGTATTTT
GGTTGGAATTAGACTCGAAGGATATCCAAATGTTCTACCTTAGCCGAATTGAGCACACCTTACGTGTGCCTCCGAGCATGCTTCACCTACCTATCCTTGATGCTATTAAG
GGCGAGCTAGAGAAACTATTCCTGGATAAGGTGGTTGCAAACTTGGGGCTCTGTATTTCTGTTTATGATATAAGATCGGTTGATGGGGGCTTTATCTTTCCCAGCGATGG
CGCTGCAACATACAAGGTTGTTTTCACATTGATTGTGTTTCGTCCATTCGTGGGGGAGATAATTATTGGAAAAGTTAAAGAATCAGATGCAAATGGTTTGCGAATATCAC
TTGGATTTTTCGAGGACATTTATGTTCCCATCCATCTTCTGCCCTCTCCATCTGAATTCAAGCCCGATCCAAAAAATGGTGGAAAACGCAGATGGGTATGGGACTATGAT
GGTCAACCATACGACATATACGAAACTGATGAGATAAAATTTAGAATACACAACATAGAGTACCCTGCAATCCCAGTGGAGCAGCCAAAAGAGAGCAATTCAAAATTCCC
AATGGAGGAGCAACCCAAAGAGAGTACTAATGTAAAAGCATTTGCCCCCATGATTGTTACTGCAACAATTGATTATGATGGATTGGGCCCTGTTTCGTGGTGGGATGGTT
CGGGAGATGCCGATGCCGAGGTCGAAGAAGATTCCTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MPKAISQLHLPHPFLLFIPDGSFSLSAPSPATRFLRPAASFACLLRRVPRRRSGSAVPRRVGEVAAVSSAAVKSLPLWFRLVPSSPSPAVIERPLSGAGVFFNEHCSRVV
VGWICSSHSARKQGWDLAFVFVSQADSGGCSTKSRGQQCLAWVSFPVLCRRGSLNFSVLLWLYVKKRGSKNVFWLELDSKDIQMFYLSRIEHTLRVPPSMLHLPILDAIK
GELEKLFLDKVVANLGLCISVYDIRSVDGGFIFPSDGAATYKVVFTLIVFRPFVGEIIIGKVKESDANGLRISLGFFEDIYVPIHLLPSPSEFKPDPKNGGKRRWVWDYD
GQPYDIYETDEIKFRIHNIEYPAIPVEQPKESNSKFPMEEQPKESTNVKAFAPMIVTATIDYDGLGPVSWWDGSGDADAEVEEDS

Lag0005153 (gene) of Sponge gourd (AG-4) v1 genome