CuGenDBv2

Gene ID	Lag0005170
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	RNase H domain-containing protein
Genome location	chr6:11434888..11435324
RNA-Seq Expression	Lag0005170
Synteny	Lag0005170
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR002156 - Ribonuclease H domain IPR036397 - Ribonuclease H superfamily IPR044730 - Ribonuclease H-like domain, plant type

Homology

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GenBank top hits	e value	%identity	Alignment
No hits found

TrEMBL top hits

e value

%identity

Alignment

A0A6A2WDB3 RNase H domain-containing protein

8.1e-04

43.37

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Query:  WSILEGISGLGWTVRDSCRSLPLIVESNSTRLIKLLQGKDVDLSEARNILDDIENLAREAINTSFSWWPRSCNRAANFLAQNA
        WSI EG+  + W   DS  S  LIV+S+S + IK+L   D DL+   +++  I  L++ A N SF W PR CN+AA++LA+ A
Subjt:  WSILEGISGLGWTVRDSCRSLPLIVESNSTRLIKLLQGKDVDLSEARNILDDIENLAREAINTSFSWWPRSCNRAANFLAQNA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAAGTTGAATTCAGACACCTCGTGGAGCATCTTGGAAGGAATTAGTGGGCTAGGGTGGACAGTTCGTGACTCCTGTAGATCTCTCCCCCTCATCGTGGAGTCTAATTC
GACAAGGCTGATCAAGCTACTTCAGGGGAAGGACGTCGATCTCTCTGAAGCAAGAAACATCTTGGACGACATCGAGAATCTGGCGAGAGAAGCGATTAACACCTCTTTTT
CATGGTGGCCGAGGTCATGCAATCGAGCAGCAAACTTCTTAGCTCAAAATGCAAGAAATTACAGTTCGACAGAACCTCATTTGAGAGGAATTTCGTTGGATTAG

mRNA sequence

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Protein sequence

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MKLNSDTSWSILEGISGLGWTVRDSCRSLPLIVESNSTRLIKLLQGKDVDLSEARNILDDIENLAREAINTSFSWWPRSCNRAANFLAQNARNYSSTEPHLRGISLD

Lag0005170 (gene) of Sponge gourd (AG-4) v1 genome