; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0005186 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005186
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr6:11722070..11724598
RNA-Seq ExpressionLag0005186
SyntenyLag0005186
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.0e-3165.57Show/hide
Query:  EEVDNSEKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTFTRPSTFQRLSVSTSKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD
        EEVDNS + +QRTSVFD IKP TTR SVFQR+SMA  EEENQC  ST+ R S F+RLS+STSKK + STS FDRLK+T+DQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTFTRPSTFQRLSVSTSKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD

Query:  KKLQSSIPSRMKRKFSVLINTE
         K+ S +PSRMKRK SV INTE
Subjt:  KKLQSSIPSRMKRKFSVLINTE

KAA0045440.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.1e-3153.63Show/hide
Query:  EEVDNSEKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTFTRPSTFQRLSVSTSKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD
        +EV+NS +  QRTSVFD IKP TTR SVFQR+SMA  EE+NQC    +TR STF+RLS+STSKK++ STS FDRLK+T+DQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTFTRPSTFQRLSVSTSKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD

Query:  KKLQSSIPSRMKRKFSVLINTE-VPSPKFEG--SHALRCSSFLQVRRFSTVAV-HSSKFEGSHVASLQFLPPSSKVFTC
         K+ S IPSRMKRK  V INTE V SP  +      L     LQ R F  VA      F  SHV  L+ L  SS    C
Subjt:  KKLQSSIPSRMKRKFSVLINTE-VPSPKFEG--SHALRCSSFLQVRRFSTVAV-HSSKFEGSHVASLQFLPPSSKVFTC

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.2e-3064.75Show/hide
Query:  EEVDNSEKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTFTRPSTFQRLSVSTSKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD
        EEVDNS + +QRTSVFD IKP TTR SVFQR+SMA  EEENQC MST+TR S F+RLS+S SKK + STS FDRLK+T+DQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTFTRPSTFQRLSVSTSKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD

Query:  KKLQSSIPSRMKRKFSVLINTE
         K+ S +PSR+KRK S+ INTE
Subjt:  KKLQSSIPSRMKRKFSVLINTE

KAA0051228.1 hypothetical protein E6C27_scaffold1250G00350 [Cucumis melo var. makuwa]6.2e-3263.71Show/hide
Query:  EEVDNSEKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTFTRPSTFQRLSVSTSKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD
        EE+DNS + +QRTS+FDHIKP TTR SVFQR+SMA  EEENQC  ST+ R S F+RLS+STSKK + STS FDRLK+T+DQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTFTRPSTFQRLSVSTSKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD

Query:  KKLQSSIPSRMKRKFSVLINTEVP
         K+ S +PSRMKRK S+ INT+VP
Subjt:  KKLQSSIPSRMKRKFSVLINTEVP

KAA0051515.1 hypothetical protein E6C27_scaffold174G00380 [Cucumis melo var. makuwa]6.9e-3154.02Show/hide
Query:  EEVDNSEKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTFTRPSTFQRLSVSTSKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD
        EEVDNS + +QR SVFD IKP TTR SVFQR+SMA  EEENQC   T+TR S F+RLS+ST KK++ STS FDRLK+T+DQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTFTRPSTFQRLSVSTSKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD

Query:  KKLQSSIPSRMKRKFSVLINTE-VPSPKFEG--SHALRCSSFLQVRRFSTVAVHS-SKFEGSHVASLQFLPPSS
         K+ S +PSRMKRK SV INT+   SP  +      L C   LQ R F  VA      F  SH   L+ L  SS
Subjt:  KKLQSSIPSRMKRKFSVLINTE-VPSPKFEG--SHALRCSSFLQVRRFSTVAVHS-SKFEGSHVASLQFLPPSS

TrEMBL top hitse value%identityAlignment
A0A5A7TQ06 Retrotransposon gag protein4.4e-3165.57Show/hide
Query:  EEVDNSEKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTFTRPSTFQRLSVSTSKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD
        EEVDNS + +QRTSVFD IKP TTR SVFQR+SMA  EEENQC  ST+ R S F+RLS+STSKK + STS FDRLK+T+DQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTFTRPSTFQRLSVSTSKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD

Query:  KKLQSSIPSRMKRKFSVLINTE
         K+ S +PSRMKRK SV INTE
Subjt:  KKLQSSIPSRMKRKFSVLINTE

A0A5A7TQK6 Retrotransposon gag protein1.5e-3153.63Show/hide
Query:  EEVDNSEKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTFTRPSTFQRLSVSTSKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD
        +EV+NS +  QRTSVFD IKP TTR SVFQR+SMA  EE+NQC    +TR STF+RLS+STSKK++ STS FDRLK+T+DQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTFTRPSTFQRLSVSTSKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD

Query:  KKLQSSIPSRMKRKFSVLINTE-VPSPKFEG--SHALRCSSFLQVRRFSTVAV-HSSKFEGSHVASLQFLPPSSKVFTC
         K+ S IPSRMKRK  V INTE V SP  +      L     LQ R F  VA      F  SHV  L+ L  SS    C
Subjt:  KKLQSSIPSRMKRKFSVLINTE-VPSPKFEG--SHALRCSSFLQVRRFSTVAV-HSSKFEGSHVASLQFLPPSSKVFTC

A0A5A7U7F9 Uncharacterized protein3.0e-3263.71Show/hide
Query:  EEVDNSEKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTFTRPSTFQRLSVSTSKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD
        EE+DNS + +QRTS+FDHIKP TTR SVFQR+SMA  EEENQC  ST+ R S F+RLS+STSKK + STS FDRLK+T+DQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTFTRPSTFQRLSVSTSKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD

Query:  KKLQSSIPSRMKRKFSVLINTEVP
         K+ S +PSRMKRK S+ INT+VP
Subjt:  KKLQSSIPSRMKRKFSVLINTEVP

A0A5A7U974 Retrotransposon gag protein5.7e-3164.75Show/hide
Query:  EEVDNSEKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTFTRPSTFQRLSVSTSKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD
        EEVDNS + +QRTSVFD IKP TTR SVFQR+SMA  EEENQC MST+TR S F+RLS+S SKK + STS FDRLK+T+DQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTFTRPSTFQRLSVSTSKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD

Query:  KKLQSSIPSRMKRKFSVLINTE
         K+ S +PSR+KRK S+ INTE
Subjt:  KKLQSSIPSRMKRKFSVLINTE

A0A5D3DKF5 Uncharacterized protein3.3e-3154.02Show/hide
Query:  EEVDNSEKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTFTRPSTFQRLSVSTSKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD
        EEVDNS + +QR SVFD IKP TTR SVFQR+SMA  EEENQC   T+TR S F+RLS+ST KK++ STS FDRLK+T+DQ +R+M +L+ K F E N D
Subjt:  EEVDNSEKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTFTRPSTFQRLSVSTSKKSQHSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSD

Query:  KKLQSSIPSRMKRKFSVLINTE-VPSPKFEG--SHALRCSSFLQVRRFSTVAVHS-SKFEGSHVASLQFLPPSS
         K+ S +PSRMKRK SV INT+   SP  +      L C   LQ R F  VA      F  SH   L+ L  SS
Subjt:  KKLQSSIPSRMKRKFSVLINTE-VPSPKFEG--SHALRCSSFLQVRRFSTVAVHS-SKFEGSHVASLQFLPPSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAATAAATCATTCTCCAAAAATTTCCACAAAAAGGAAAAAAAGAACTTTGCGACTTCGTATTGCATCGACGTAGAAGAAGTTGACAATTCTGAGAAGGGTGAACA
AAGGACCTCCGTCTTCGATCACATCAAGCCTCCAACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGCCGCGACAGAAGAAGAAAATCAATGTTCGATGTCCACCT
TCACTCGACCTTCAACTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAGAGTCAACATTCGACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGA
AAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATAC
AGAAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCCACTGTTGCAGTTCATTCTTCCAAGTTCGAAGGTT
CTCACGTCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTTTCACGTGCTTCGCTGCAGTTCCTTCTCTCCAAGGTCGAAGGTTCTCAAGCACTGCGTTGCAGTTC
TTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCGGTTCCTTCCTCCAAGTTTGAAGGTTCTCA
CGCGCTTCGTTGCAGTTCCTTCCTCACAATTCGAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTTCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGTTGCAGT
TCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCTCTACGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACACGCTTCGCTGTAGTTTTTTC
TCCCTAACTTCGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCCTAAGTTTGAAGGTTCTCACGTTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTC
ACATGCTTCGGTGAAGTTCCTTCCTCCCAAGTTTGAAGGTTCTTACGCGCTTCGCTGCAGTTCCTTACTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTTCTTC
TCCCTAAGTTCGAAGGTTCTCACGCGCTTCGATGCAGTTCCTTCCTCCCTAAGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGA
AGGTTCTCACGCGCTGTGATTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTC
GTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAA
GGCGCTTCTCTCCACTACTCCTTCTCCAAGTTCGAAGGCGCTTCCCTCCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAA
GTTCAAAGGTTCCCTCACGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACTTCTCCAAGTTCGAAGGCGTTTCTCTCCACTGCTCC
TTCTCCAAGTTCGAAGGCGCTTCTCTCCACTACTCCTTCTCCAAGTTCGAAGGTGTTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGT
TCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGTAGTTGACGGCGTCCGCTGCGCTTCATCTTCA
AATGTTGGCAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGAATAAATCATTCTCCAAAAATTTCCACAAAAAGGAAAAAAAGAACTTTGCGACTTCGTATTGCATCGACGTAGAAGAAGTTGACAATTCTGAGAAGGGTGAACA
AAGGACCTCCGTCTTCGATCACATCAAGCCTCCAACTACTCGTCCTTCAGTATTCCAAAGAATGAGTATGGCCGCGACAGAAGAAGAAAATCAATGTTCGATGTCCACCT
TCACTCGACCTTCAACTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAGAGTCAACATTCGACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGA
AAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATAC
AGAAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCCACTGTTGCAGTTCATTCTTCCAAGTTCGAAGGTT
CTCACGTCGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTTTCACGTGCTTCGCTGCAGTTCCTTCTCTCCAAGGTCGAAGGTTCTCAAGCACTGCGTTGCAGTTC
TTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCGGTTCCTTCCTCCAAGTTTGAAGGTTCTCA
CGCGCTTCGTTGCAGTTCCTTCCTCACAATTCGAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTTCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGTTGCAGT
TCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTTCGCTCTACGCTTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACACGCTTCGCTGTAGTTTTTTC
TCCCTAACTTCGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCCCTAAGTTTGAAGGTTCTCACGTTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTC
ACATGCTTCGGTGAAGTTCCTTCCTCCCAAGTTTGAAGGTTCTTACGCGCTTCGCTGCAGTTCCTTACTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTTCTTC
TCCCTAAGTTCGAAGGTTCTCACGCGCTTCGATGCAGTTCCTTCCTCCCTAAGTTCGAAGGTTCTCACTCGCTTCGCTGCAGTTCCTTCCTCCAAATTCGAAGGTTTCGA
AGGTTCTCACGCGCTGTGATTCGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTC
GTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAA
GGCGCTTCTCTCCACTACTCCTTCTCCAAGTTCGAAGGCGCTTCCCTCCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAA
GTTCAAAGGTTCCCTCACGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACTTCTCCAAGTTCGAAGGCGTTTCTCTCCACTGCTCC
TTCTCCAAGTTCGAAGGCGCTTCTCTCCACTACTCCTTCTCCAAGTTCGAAGGTGTTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGT
TCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGTAGTTGACGGCGTCCGCTGCGCTTCATCTTCA
AATGTTGGCAGTTGA
Protein sequenceShow/hide protein sequence
MLNKSFSKNFHKKEKKNFATSYCIDVEEVDNSEKGEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTFTRPSTFQRLSVSTSKKSQHSTSVFDRLKVTSDQPKR
KMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEVPSPKFEGSHALRCSSFLQVRRFSTVAVHSSKFEGSHVASLQFLPPSSKVFTCFAAVPSLQGRRFSSTALQF
FLPKFEGSRTSLQFLPPNSKVLTRFAAVPSSKFEGSHALRCSSFLTIRSSKVLTRFAAVSSPKFEGSHVASLQFLPPSLKVLTSLRFALRFVAVPSSKFEGSHTLRCSFF
SLTSKVLTRFAAIPSSLSLKVLTLLRCSSFLQVRRFSHASVKFLPPKFEGSYALRCSSLLQVRRFSRASLQFLLPKFEGSHALRCSSFLPKFEGSHSLRCSSFLQIRRFR
RFSRAVIRCSSFLQVRRFSCASLHSSFLQVRRFSCASLLPSSKFEGSLTRCCSSFLQVRRFPHALRSLLLQVRRRFSPLLLLQVRRRFPPLLPSSKFEGSLTRCCSSFLQ
VQRFPHALLSTAPSPSSKALLSVATSPSSKAFLSTAPSPSSKALLSTTPSPSSKVFLSTPLFEGSPLRFSFSKFEGSPLLLFKCLAAVDVLVPLHLQMLVVDGVRCASSS
NVGS