CuGenDBv2

Gene ID	Lag0005218
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	CCHC-type domain-containing protein
Genome location	chr6:12141498..12142938
RNA-Seq Expression	Lag0005218
Synteny	Lag0005218
Gene Ontology terms	GO:0044237 - cellular metabolic process (biological process) GO:0016020 - membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0004672 - protein kinase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR036875 - Zinc finger, CCHC-type superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAF5463231.1 hypothetical protein F2P56_019161 [Juglans regia]

5.3e-46

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Query:  MNFGLWQVQVKDVLIQSGLHKTLKGRPSDGASESGEGGPVESSGGSSRGSKKSSMSDEDWEEMILRAASAIRLNLAKNILANVHEISTAKELWEKLEAMY
        +NFGLWQVQVKDVLIQSGLHK LKGRP+   S          +  + +   +S MSDEDWE++ LRAASAIRL LAKN+LAN+H ISTAK+LWEKLE +Y
Subjt:  MNFGLWQVQVKDVLIQSGLHKTLKGRPSDGASESGEGGPVESSGGSSRGSKKSSMSDEDWEEMILRAASAIRLNLAKNILANVHEISTAKELWEKLEAMY

Query:  QAKSISNQLYLKEQFYTLRIEEGTKISDHLCVLNGIISELE-VGVFIFRPKTDTTDR------NRPN----------RRRRKRLKSE-------------
        Q K +SN++YLKEQF+TL + EGT ISDHL VLNGI+SELE +GV     K D  D+      + P+            + K + SE             
Subjt:  QAKSISNQLYLKEQFYTLRIEEGTKISDHLCVLNGIISELE-VGVFIFRPKTDTTDR------NRPN----------RRRRKRLKSE-------------

Query:  -GRTSP--EDSALVASNWKKKKESMQKKGCWECGQSGHMKKDCPNR-AGSSKASRS
         GR  P    + +VA N KKK     K  CW CGQSGH+KK+CP   AGS+  S+S
Subjt:  -GRTSP--EDSALVASNWKKKKESMQKKGCWECGQSGHMKKDCPNR-AGSSKASRS

KAF5758504.1 putative RNA-directed DNA polymerase [Helianthus annuus]

1.8e-46

47.49

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Query:  MNFGLWQVQVKDVLIQSGLHKTLKGRPSDGASESGEGGPVESSGGSSRGSKKSSMSDEDWEEMILRAASAIRLNLAKNILANVHEISTAKELWEKLEAMY
        +NFGLWQVQVKDVLIQSGLHK L+G+P+  +S+   G               S   DE+WE++ LRAASAIRL LAKN+LANVH ISTAK+LWEKLE +Y
Subjt:  MNFGLWQVQVKDVLIQSGLHKTLKGRPSDGASESGEGGPVESSGGSSRGSKKSSMSDEDWEEMILRAASAIRLNLAKNILANVHEISTAKELWEKLEAMY

Query:  QAKSISNQLYLKEQFYTLRIEEGTKISDHLCVLNGIISELE-VGVFI---------FRPKTDTTDRNRP-----------------NRRRRKRLKSEGRT
        Q K ISN+LYLKEQF+TLR++  TKISDHL VLN I+SELE +GV +             T + +  +P                      KRL S G T
Subjt:  QAKSISNQLYLKEQFYTLRIEEGTKISDHLCVLNGIISELE-VGVFI---------FRPKTDTTDRNRP-----------------NRRRRKRLKSEGRT

Query:  SPEDSALVASNWKKKKESMQKKGCWECGQSGHMKKDCPNRAGSSKASRSDADVVFSSGE
        S E + L+  N  KKK   +   CW+CGQSGH+K++CP  A S+  S++  +V    G+
Subjt:  SPEDSALVASNWKKKKESMQKKGCWECGQSGHMKKDCPNRAGSSKASRSDADVVFSSGE

KAF5765959.1 putative RNA-directed DNA polymerase [Helianthus annuus]

3.1e-46

47.1

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Query:  MNFGLWQVQVKDVLIQSGLHKTLKGRPSDGASESGEGGPVESSGGSSRGSKKSSMSDEDWEEMILRAASAIRLNLAKNILANVHEISTAKELWEKLEAMY
        +NFGLWQVQVKDVLIQSGLHK L+G+P+  +S+   G               S   DE+WE++ LRAASAIRL LAKN+LANVH ISTAK+LWEKLE +Y
Subjt:  MNFGLWQVQVKDVLIQSGLHKTLKGRPSDGASESGEGGPVESSGGSSRGSKKSSMSDEDWEEMILRAASAIRLNLAKNILANVHEISTAKELWEKLEAMY

Query:  QAKSISNQLYLKEQFYTLRIEEGTKISDHLCVLNGIISELE-VGVFI---------FRPKTDTTDRNRP-----------------NRRRRKRLKSEGRT
        Q K I N+LYLKEQF+TLR++  TKISDHL VLN I+SELE +GV +             T + +  +P                      KRL S G T
Subjt:  QAKSISNQLYLKEQFYTLRIEEGTKISDHLCVLNGIISELE-VGVFI---------FRPKTDTTDRNRP-----------------NRRRRKRLKSEGRT

Query:  SPEDSALVASNWKKKKESMQKKGCWECGQSGHMKKDCPNRAGSSKASRSDADVVFSSGE
        S E + L+  N  KKK   +   CW+CGQSGH+K++CP  A S+ +S++  +V    G+
Subjt:  SPEDSALVASNWKKKKESMQKKGCWECGQSGHMKKDCPNRAGSSKASRSDADVVFSSGE

KAG7577502.1 F-box associated domain type 1 [Arabidopsis thaliana x Arabidopsis arenosa]

4.8e-47

49.21

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Query:  MNFGLWQVQVKDVLIQSGLHKTLKGRPSDGASESGEGGPVESSGGSSRGSKKSSMSDEDWEEMILRAASAIRLNLAKNILANVHEISTAKELWEKLEAMY
        +NFGLWQVQVKD+LIQ GLHK LKG+P+          PV     +   S K  +SD DWE++ LRAASAIRL LAKNILANVH ISTAKELWEKLE +Y
Subjt:  MNFGLWQVQVKDVLIQSGLHKTLKGRPSDGASESGEGGPVESSGGSSRGSKKSSMSDEDWEEMILRAASAIRLNLAKNILANVHEISTAKELWEKLEAMY

Query:  QAKSISNQLYLKEQFYTLRIEEGTKISDHLCVLNGIISELE-VGVFI--------------------------FRPKTDTTDRNRPNRRRRKRLKSEGRT
        QAK +SN++YLKE+F+TLR+ EGT +SDHL VLNGI+SELE +GV +                           + K    +         KRL +    
Subjt:  QAKSISNQLYLKEQFYTLRIEEGTKISDHLCVLNGIISELE-VGVFI--------------------------FRPKTDTTDRNRPNRRRRKRLKSEGRT

Query:  SPEDSALVASNWKKKKESMQKKGCWECGQSGHMKKDCPNRAGSSKASRSDAD
         P +SALVA N KK+    +K  CW CGQSGH+K++CPN  G S    S+ D
Subjt:  SPEDSALVASNWKKKKESMQKKGCWECGQSGHMKKDCPNRAGSSKASRSDAD

XP_022139673.1 uncharacterized protein LOC111010521 [Momordica charantia]

1.1e-70

67.08

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Query:  MNFGLWQVQVKDVLIQSGLHKTLKGRPSDGASE--SGEGGPVESSGGSSRGSKKSSMSDEDWEEMILRAASAIRLNLAKNILANVHEISTAKELWEKLEA
        +NFGLWQVQVKDVLIQS LHK LKGRPS+GASE  S +GGP+ESSGGSSRGSKKSSMS EDWEEM LRAASAIR +LAKNILANVH ISTAKELWEKLEA
Subjt:  MNFGLWQVQVKDVLIQSGLHKTLKGRPSDGASE--SGEGGPVESSGGSSRGSKKSSMSDEDWEEMILRAASAIRLNLAKNILANVHEISTAKELWEKLEA

Query:  MYQAKSISNQLYLKEQFYTLRIEEGTKISDHLCVLNGIISELE------------VGVFIFRPKT------------DTTDRNRPNRR---RRKRLKSEG
        +YQAK ISN+LYLKEQF+TL++EEG KISDHL  LN II ELE            + + +  P +            DT +      +     +RLKSEG
Subjt:  MYQAKSISNQLYLKEQFYTLRIEEGTKISDHLCVLNGIISELE------------VGVFIFRPKT------------DTTDRNRPNRR---RRKRLKSEG

Query:  RTSPEDSALVASNWKKKKESMQKKG-CWECGQSGHMKKDCPNR
        RTS EDSALV SNWKKKK+S+QKK  CW CGQSGHMKKDCPNR
Subjt:  RTSPEDSALVASNWKKKKESMQKKG-CWECGQSGHMKKDCPNR

TrEMBL top hits

e value

%identity

Alignment

A0A6A2YS90 Transcription initiation factor IIA subunit 2

4.3e-46

49.43

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Query:  MNFGLWQVQVKDVLIQSGLHKTLKGRPSDGASESGEGGPVESSGGSSRGSKKSSMSDEDWEEMILRAASAIRLNLAKNILANVHEISTAKELWEKLEAMY
        +NFGLWQVQVKD+LIQSGL+K LKG+P+  +       P +SSG       KS MS+E+WEE+ +RAAS IRL LAKN+LANV   S+ KELWEKLE MY
Subjt:  MNFGLWQVQVKDVLIQSGLHKTLKGRPSDGASESGEGGPVESSGGSSRGSKKSSMSDEDWEEMILRAASAIRLNLAKNILANVHEISTAKELWEKLEAMY

Query:  QAKSISNQLYLKEQFYTLRIEEGTKISDHLCVLNGIISELE-VGVFI--------------------------FRPKTDTTDRNRPNRRRRKRLKSEGRT
        QAKS+SN+LYLKE+F+ L++EEGTKISDHL  LNGI+SELE +GV I                           +   + ++         +RLK+    
Subjt:  QAKSISNQLYLKEQFYTLRIEEGTKISDHLCVLNGIISELE-VGVFI--------------------------FRPKTDTTDRNRPNRRRRKRLKSEGRT

Query:  SPEDSAL-VASNWKKKKESMQKKGCWECGQSGHMKKDCPN-RAGSSKASRSDAD--VVFSS
        S E  AL V  N KK K S +K  CW CGQ GH+KKDC N  A S+  S+SDA   VVF +
Subjt:  SPEDSAL-VASNWKKKKESMQKKGCWECGQSGHMKKDCPN-RAGSSKASRSDAD--VVFSS

A0A6A3BK59 CCHC-type domain-containing protein

4.3e-46

49.43

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Query:  MNFGLWQVQVKDVLIQSGLHKTLKGRPSDGASESGEGGPVESSGGSSRGSKKSSMSDEDWEEMILRAASAIRLNLAKNILANVHEISTAKELWEKLEAMY
        +NFGLWQVQVKD+LIQSGL+K LKG+P+  +       P +SSG       KS MS+E+WEE+ +RAAS IRL LAKN+LANV   S+ KELWEKLE MY
Subjt:  MNFGLWQVQVKDVLIQSGLHKTLKGRPSDGASESGEGGPVESSGGSSRGSKKSSMSDEDWEEMILRAASAIRLNLAKNILANVHEISTAKELWEKLEAMY

Query:  QAKSISNQLYLKEQFYTLRIEEGTKISDHLCVLNGIISELE-VGVFI--------------------------FRPKTDTTDRNRPNRRRRKRLKSEGRT
        QAKS+SN+LYLKE+F+ L++EEGTKISDHL  LNGI+SELE +GV I                           +   + ++         +RLK+    
Subjt:  QAKSISNQLYLKEQFYTLRIEEGTKISDHLCVLNGIISELE-VGVFI--------------------------FRPKTDTTDRNRPNRRRRKRLKSEGRT

Query:  SPEDSAL-VASNWKKKKESMQKKGCWECGQSGHMKKDCPN-RAGSSKASRSDAD--VVFSS
        S E  AL V  N KK K S +K  CW CGQ GH+KKDC N  A S+  S+SDA   VVF +
Subjt:  SPEDSAL-VASNWKKKKESMQKKGCWECGQSGHMKKDCPN-RAGSSKASRSDAD--VVFSS

A0A6A3CWI3 CCHC-type domain-containing protein

2.2e-45

49.04

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Query:  MNFGLWQVQVKDVLIQSGLHKTLKGRPSDGASESGEGGPVESSGGSSRGSKKSSMSDEDWEEMILRAASAIRLNLAKNILANVHEISTAKELWEKLEAMY
        +NFGLWQVQVKD+LIQSGL+K LKG+P+  +       P +SSG       KS MS+E+WEE+ +RAAS IRL LAKN+LANV   S+ KELWEKLE MY
Subjt:  MNFGLWQVQVKDVLIQSGLHKTLKGRPSDGASESGEGGPVESSGGSSRGSKKSSMSDEDWEEMILRAASAIRLNLAKNILANVHEISTAKELWEKLEAMY

Query:  QAKSISNQLYLKEQFYTLRIEEGTKISDHLCVLNGIISELE-VGVFI--------------------------FRPKTDTTDRNRPNRRRRKRLKSEGRT
        QAKS+SN+LYLKE+F+ L++EEGTKISDHL  LNGI+SELE +GV I                           +   + ++         +RLK+    
Subjt:  QAKSISNQLYLKEQFYTLRIEEGTKISDHLCVLNGIISELE-VGVFI--------------------------FRPKTDTTDRNRPNRRRRKRLKSEGRT

Query:  SPEDSAL-VASNWKKKKESMQKKGCWECGQSGHMKKDCPN-RAGSSKASRSDAD--VVFSS
        S E  AL V  N KK K S +K  CW CGQ GH+KKDC N  A  +  S+SDA   VVF +
Subjt:  SPEDSAL-VASNWKKKKESMQKKGCWECGQSGHMKKDCPN-RAGSSKASRSDAD--VVFSS

A0A6A3DA47 CCHC-type domain-containing protein

1.7e-45

49.43

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Query:  MNFGLWQVQVKDVLIQSGLHKTLKGRPSDGASESGEGGPVESSGGSSRGSKKSSMSDEDWEEMILRAASAIRLNLAKNILANVHEISTAKELWEKLEAMY
        +NFGLWQVQVKD+LIQSGL+K LKG+P+          P +SSG       KS MS+E+WEE+ +RAAS IRL LAKN+LANV   S+ KELWEKLE MY
Subjt:  MNFGLWQVQVKDVLIQSGLHKTLKGRPSDGASESGEGGPVESSGGSSRGSKKSSMSDEDWEEMILRAASAIRLNLAKNILANVHEISTAKELWEKLEAMY

Query:  QAKSISNQLYLKEQFYTLRIEEGTKISDHLCVLNGIISELE-VGVFI--------------------------FRPKTDTTDRNRPNRRRRKRLKSEGRT
        QAKS+SN+LYLKE+F+ L++EEGTKISDHL  LNGI+SELE +GV I                           +   + ++         +RLK+    
Subjt:  QAKSISNQLYLKEQFYTLRIEEGTKISDHLCVLNGIISELE-VGVFI--------------------------FRPKTDTTDRNRPNRRRRKRLKSEGRT

Query:  SPEDSAL-VASNWKKKKESMQKKGCWECGQSGHMKKDCPN-RAGSSKASRSDAD--VVFSS
        S E  AL V  N KK K S +K  CW CGQ GH+KKDC N  A S+  S+SDA   VVF +
Subjt:  SPEDSAL-VASNWKKKKESMQKKGCWECGQSGHMKKDCPN-RAGSSKASRSDAD--VVFSS

A0A6J1CG82 uncharacterized protein LOC111010521

5.1e-71

67.08

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Query:  MNFGLWQVQVKDVLIQSGLHKTLKGRPSDGASE--SGEGGPVESSGGSSRGSKKSSMSDEDWEEMILRAASAIRLNLAKNILANVHEISTAKELWEKLEA
        +NFGLWQVQVKDVLIQS LHK LKGRPS+GASE  S +GGP+ESSGGSSRGSKKSSMS EDWEEM LRAASAIR +LAKNILANVH ISTAKELWEKLEA
Subjt:  MNFGLWQVQVKDVLIQSGLHKTLKGRPSDGASE--SGEGGPVESSGGSSRGSKKSSMSDEDWEEMILRAASAIRLNLAKNILANVHEISTAKELWEKLEA

Query:  MYQAKSISNQLYLKEQFYTLRIEEGTKISDHLCVLNGIISELE------------VGVFIFRPKT------------DTTDRNRPNRR---RRKRLKSEG
        +YQAK ISN+LYLKEQF+TL++EEG KISDHL  LN II ELE            + + +  P +            DT +      +     +RLKSEG
Subjt:  MYQAKSISNQLYLKEQFYTLRIEEGTKISDHLCVLNGIISELE------------VGVFIFRPKT------------DTTDRNRPNRR---RRKRLKSEG

Query:  RTSPEDSALVASNWKKKKESMQKKG-CWECGQSGHMKKDCPNR
        RTS EDSALV SNWKKKK+S+QKK  CW CGQSGHMKKDCPNR
Subjt:  RTSPEDSALVASNWKKKKESMQKKG-CWECGQSGHMKKDCPNR

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

6.5e-23

30.34

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Query:  FGLWQVQVKDVLIQSGLHKTLKGRPSDGASESGEGGPVESSGGSSRGSKKSSMSDEDWEEMILRAASAIRLNLAKNILANVHEISTAKELWEKLEAMYQA
        F  WQ +++D+LIQ GLHK L                V+S        K  +M  EDW ++  RAASAIRL+L+ +++ N+ +  TA+ +W +LE++Y +
Subjt:  FGLWQVQVKDVLIQSGLHKTLKGRPSDGASESGEGGPVESSGGSSRGSKKSSMSDEDWEEMILRAASAIRLNLAKNILANVHEISTAKELWEKLEAMYQA

Query:  KSISNQLYLKEQFYTLRIEEGTKISDHLCVLNGIISEL-------------------------EVGVFIFRPKT-----DTTDRNRPNRRRRKRLKSEG-
        K+++N+LYLK+Q Y L + EGT    HL V NG+I++L                          +   I   KT     D T     N + RK+ +++G 
Subjt:  KSISNQLYLKEQFYTLRIEEGTKISDHLCVLNGIISEL-------------------------EVGVFIFRPKT-----DTTDRNRPNRRRRKRLKSEG-

Query:  ------------RTSPEDSALVASNWKKKKESMQKKGCWECGQSGHMKKDCPN-RAGSSKASRSDAD
                    R+S       A    K +   + + C+ C Q GH K+DCPN R G  + S    D
Subjt:  ------------RTSPEDSALVASNWKKKKESMQKKGCWECGQSGHMKKDCPN-RAGSSKASRSDAD

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAACTTCGGCTTGTGGCAAGTGCAAGTCAAGGACGTGCTGATACAATCTGGGTTACACAAGACTTTGAAGGGAAGACCAAGCGATGGTGCTTCTGAAAGCGGTGAAGG
TGGTCCAGTGGAGTCCAGTGGCGGTTCCAGCAGAGGTTCGAAGAAGTCCAGCATGAGTGATGAAGATTGGGAAGAAATGATTTTGAGAGCTGCAAGTGCAATTAGATTAA
ATTTGGCTAAGAACATTCTTGCAAATGTGCATGAAATTTCGACAGCCAAAGAGCTTTGGGAGAAGCTTGAAGCAATGTATCAGGCAAAGAGCATCTCGAATCAGTTGTAC
CTGAAGGAGCAGTTTTACACGCTGCGAATAGAGGAAGGTACGAAAATCTCAGATCATCTGTGTGTTCTCAATGGCATCATTTCAGAGCTGGAGGTAGGGGTGTTCATCTT
CAGACCGAAAACCGACACGACCGACCGAAACCGACCGAACCGACGTCGAAGAAAAAGGTTGAAGAGTGAAGGGCGTACTTCACCGGAGGATTCAGCACTAGTAGCTAGCA
ATTGGAAGAAGAAGAAAGAGTCCATGCAGAAGAAAGGTTGCTGGGAATGTGGACAGTCTGGACACATGAAAAAGGATTGTCCTAACAGAGCAGGTTCGTCAAAGGCCTCT
AGGTCGGATGCTGACGTTGTCTTTTCGTCAGGGGAGACAGTGAATTCCTCTGAAGAAAGACATAATTCATCCTCATGGTATGTCCTCTTAACCATGATAGAGGATGTGAT
GTTAGCGGTTCCACAAGTTTGCACACGGGCATTGGCTTGGTAG

mRNA sequence

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Protein sequence

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MNFGLWQVQVKDVLIQSGLHKTLKGRPSDGASESGEGGPVESSGGSSRGSKKSSMSDEDWEEMILRAASAIRLNLAKNILANVHEISTAKELWEKLEAMYQAKSISNQLY
LKEQFYTLRIEEGTKISDHLCVLNGIISELEVGVFIFRPKTDTTDRNRPNRRRRKRLKSEGRTSPEDSALVASNWKKKKESMQKKGCWECGQSGHMKKDCPNRAGSSKAS
RSDADVVFSSGETVNSSEERHNSSSWYVLLTMIEDVMLAVPQVCTRALAW

Lag0005218 (gene) of Sponge gourd (AG-4) v1 genome