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Lag0005227 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005227
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr6:12347932..12348336
RNA-Seq ExpressionLag0005227
SyntenyLag0005227
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033245.1 uncharacterized protein E6C27_scaffold845G00400 [Cucumis melo var. makuwa]7.4e-1751.3Show/hide
Query:  MQNDKAGEIIPGEIPLIESQKVEHPKNV-KKESIKEVDACEVQSKEASAHPAKSKAPKEEASSNAPILRYVPLSRRKKGESPFTECLGILKVGDVEILKE
        ++ND + E +  E+PL+  +     K++  KE  K +        EAS   AKS    +E +SN PILRYVPLSRRKKGESPF E    LKVGD+EILKE
Subjt:  MQNDKAGEIIPGEIPLIESQKVEHPKNV-KKESIKEVDACEVQSKEASAHPAKSKAPKEEASSNAPILRYVPLSRRKKGESPFTECLGILKVGDVEILKE

Query:  NFSTPLTTITKQEIQ
         F+TPLT ITKQEI+
Subjt:  NFSTPLTTITKQEIQ

KAA0054591.1 gypsy-like retrotransposase [Cucumis melo var. makuwa]2.2e-1643.7Show/hide
Query:  MQNDKAGEIIPGEIPLIESQKVEHPKNV-KKESIKEVDACEVQSKEASAHPAKSKAPKEEASSNAPILRYVPLSRRKKGESPFTECLGILKVGDVEILKE
        ++ND + E++  E+P++  +     K++  KE  K          EAS   AKS    +E +SN PILRYVPLSRRKKGESPF E    LKVGD+E+L+E
Subjt:  MQNDKAGEIIPGEIPLIESQKVEHPKNV-KKESIKEVDACEVQSKEASAHPAKSKAPKEEASSNAPILRYVPLSRRKKGESPFTECLGILKVGDVEILKE

Query:  NFSTPLTTITKQEIQESNIDHTKMTFAE-KTNEGW
        +F+TPLT ITK   QE+  D T+ +  + +T +G+
Subjt:  NFSTPLTTITKQEIQESNIDHTKMTFAE-KTNEGW

KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.3e-1750.43Show/hide
Query:  MQNDKAGEIIPGEIPLIESQKVEHPKNV-KKESIKEVDACEVQSKEASAHPAKSKAPKEEASSNAPILRYVPLSRRKKGESPFTECLGILKVGDVEILKE
        ++ND + E++  E+PL+  +     K++  +ES K          EAS   AKS    +E +SN PILRYVPLSRRKKGESPF E    LKVGD+E+LKE
Subjt:  MQNDKAGEIIPGEIPLIESQKVEHPKNV-KKESIKEVDACEVQSKEASAHPAKSKAPKEEASSNAPILRYVPLSRRKKGESPFTECLGILKVGDVEILKE

Query:  NFSTPLTTITKQEIQ
        +F+TPLT ITKQEI+
Subjt:  NFSTPLTTITKQEIQ

KAA0062018.1 uncharacterized protein E6C27_scaffold89G003490 [Cucumis melo var. makuwa]7.4e-1746.51Show/hide
Query:  MQNDKAGEIIPGEIPLIESQKVEHPKNV-KKESIKEVDACEVQSKEASAHPAKSKAPKEEASSNAPILRYVPLSRRKKGESPFTECLGILKVGDVEILKE
        ++ND + E++  E+PL+  +     K++  KE  K +     +  EAS   AKS    +E +SN PIL YVPLSRRKKGESPF E    LKVGD+E+LKE
Subjt:  MQNDKAGEIIPGEIPLIESQKVEHPKNV-KKESIKEVDACEVQSKEASAHPAKSKAPKEEASSNAPILRYVPLSRRKKGESPFTECLGILKVGDVEILKE

Query:  NFSTPLTTITKQEIQESNIDHTKMTFAEK
        +F+TPLT ITKQEI+   ID T+ +  ++
Subjt:  NFSTPLTTITKQEIQESNIDHTKMTFAEK

TYK05005.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.8e-1645.74Show/hide
Query:  MQNDKAGEIIPGEIPLIESQKVEHPKNV-KKESIKEVDACEVQSKEASAHPAKSKAPKEEASSNAPILRYVPLSRRKKGESPFTECLGILKVGDVEILKE
        ++ND + E++  E+PL+  +     K++  KE    +     +  EAS   AKS    +E +SN  ILRYVPLSRRKKGESPF E    LKVGD+E+LKE
Subjt:  MQNDKAGEIIPGEIPLIESQKVEHPKNV-KKESIKEVDACEVQSKEASAHPAKSKAPKEEASSNAPILRYVPLSRRKKGESPFTECLGILKVGDVEILKE

Query:  NFSTPLTTITKQEIQESNIDHTKMTFAEK
        +F+TPLT ITKQEI+   ID T+ +  ++
Subjt:  NFSTPLTTITKQEIQESNIDHTKMTFAEK

TrEMBL top hitse value%identityAlignment
A0A5A7SVR4 Uncharacterized protein3.6e-1751.3Show/hide
Query:  MQNDKAGEIIPGEIPLIESQKVEHPKNV-KKESIKEVDACEVQSKEASAHPAKSKAPKEEASSNAPILRYVPLSRRKKGESPFTECLGILKVGDVEILKE
        ++ND + E +  E+PL+  +     K++  KE  K +        EAS   AKS    +E +SN PILRYVPLSRRKKGESPF E    LKVGD+EILKE
Subjt:  MQNDKAGEIIPGEIPLIESQKVEHPKNV-KKESIKEVDACEVQSKEASAHPAKSKAPKEEASSNAPILRYVPLSRRKKGESPFTECLGILKVGDVEILKE

Query:  NFSTPLTTITKQEIQ
         F+TPLT ITKQEI+
Subjt:  NFSTPLTTITKQEIQ

A0A5A7UM27 Gypsy-like retrotransposase1.0e-1643.7Show/hide
Query:  MQNDKAGEIIPGEIPLIESQKVEHPKNV-KKESIKEVDACEVQSKEASAHPAKSKAPKEEASSNAPILRYVPLSRRKKGESPFTECLGILKVGDVEILKE
        ++ND + E++  E+P++  +     K++  KE  K          EAS   AKS    +E +SN PILRYVPLSRRKKGESPF E    LKVGD+E+L+E
Subjt:  MQNDKAGEIIPGEIPLIESQKVEHPKNV-KKESIKEVDACEVQSKEASAHPAKSKAPKEEASSNAPILRYVPLSRRKKGESPFTECLGILKVGDVEILKE

Query:  NFSTPLTTITKQEIQESNIDHTKMTFAE-KTNEGW
        +F+TPLT ITK   QE+  D T+ +  + +T +G+
Subjt:  NFSTPLTTITKQEIQESNIDHTKMTFAE-KTNEGW

A0A5A7V356 Uncharacterized protein3.6e-1746.51Show/hide
Query:  MQNDKAGEIIPGEIPLIESQKVEHPKNV-KKESIKEVDACEVQSKEASAHPAKSKAPKEEASSNAPILRYVPLSRRKKGESPFTECLGILKVGDVEILKE
        ++ND + E++  E+PL+  +     K++  KE  K +     +  EAS   AKS    +E +SN PIL YVPLSRRKKGESPF E    LKVGD+E+LKE
Subjt:  MQNDKAGEIIPGEIPLIESQKVEHPKNV-KKESIKEVDACEVQSKEASAHPAKSKAPKEEASSNAPILRYVPLSRRKKGESPFTECLGILKVGDVEILKE

Query:  NFSTPLTTITKQEIQESNIDHTKMTFAEK
        +F+TPLT ITKQEI+   ID T+ +  ++
Subjt:  NFSTPLTTITKQEIQESNIDHTKMTFAEK

A0A5A7VFQ8 Ty3-gypsy retrotransposon protein1.4e-1643.7Show/hide
Query:  MQNDKAGEIIPGEIPLIESQKVEHPKNVK-KESIKEVDACEVQSKEASAHPAKSKAPKEEASSNAPILRYVPLSRRKKGESPFTECLGILKVGDVEILKE
        ++ND + E++P EIPL+  +     K+++ ++  K          EAS    KS    +E +SN+ +LRYVPLSRR+KGESPF E L  LKVG++E+LKE
Subjt:  MQNDKAGEIIPGEIPLIESQKVEHPKNVK-KESIKEVDACEVQSKEASAHPAKSKAPKEEASSNAPILRYVPLSRRKKGESPFTECLGILKVGDVEILKE

Query:  NFSTPLTTITKQEIQESNIDHTKMTFAEK-TNEGW
        +F+TP+T ITKQEI+   ID T+    +K T +G+
Subjt:  NFSTPLTTITKQEIQESNIDHTKMTFAEK-TNEGW

A0A5D3BY54 Ty3-gypsy retrotransposon protein1.6e-1750.43Show/hide
Query:  MQNDKAGEIIPGEIPLIESQKVEHPKNV-KKESIKEVDACEVQSKEASAHPAKSKAPKEEASSNAPILRYVPLSRRKKGESPFTECLGILKVGDVEILKE
        ++ND + E++  E+PL+  +     K++  +ES K          EAS   AKS    +E +SN PILRYVPLSRRKKGESPF E    LKVGD+E+LKE
Subjt:  MQNDKAGEIIPGEIPLIESQKVEHPKNV-KKESIKEVDACEVQSKEASAHPAKSKAPKEEASSNAPILRYVPLSRRKKGESPFTECLGILKVGDVEILKE

Query:  NFSTPLTTITKQEIQ
        +F+TPLT ITKQEI+
Subjt:  NFSTPLTTITKQEIQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGAATGATAAAGCAGGAGAGATCATCCCAGGTGAGATTCCTCTGATTGAAAGTCAGAAAGTAGAGCATCCAAAGAATGTGAAGAAGGAGTCGATCAAAGAAGTAGA
TGCTTGTGAAGTTCAATCAAAGGAAGCATCTGCTCACCCTGCAAAATCGAAAGCTCCAAAGGAAGAGGCATCGTCAAATGCCCCTATATTGCGCTACGTTCCTTTATCTC
GACGCAAGAAAGGGGAATCACCATTCACAGAATGTTTAGGAATTTTGAAGGTTGGTGATGTGGAGATTCTAAAAGAAAATTTCTCCACACCTCTGACAACAATTACCAAG
CAAGAGATTCAGGAATCAAATATTGATCATACCAAAATGACTTTTGCCGAAAAGACGAACGAAGGCTGGATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGAATGATAAAGCAGGAGAGATCATCCCAGGTGAGATTCCTCTGATTGAAAGTCAGAAAGTAGAGCATCCAAAGAATGTGAAGAAGGAGTCGATCAAAGAAGTAGA
TGCTTGTGAAGTTCAATCAAAGGAAGCATCTGCTCACCCTGCAAAATCGAAAGCTCCAAAGGAAGAGGCATCGTCAAATGCCCCTATATTGCGCTACGTTCCTTTATCTC
GACGCAAGAAAGGGGAATCACCATTCACAGAATGTTTAGGAATTTTGAAGGTTGGTGATGTGGAGATTCTAAAAGAAAATTTCTCCACACCTCTGACAACAATTACCAAG
CAAGAGATTCAGGAATCAAATATTGATCATACCAAAATGACTTTTGCCGAAAAGACGAACGAAGGCTGGATTTGA
Protein sequenceShow/hide protein sequence
MQNDKAGEIIPGEIPLIESQKVEHPKNVKKESIKEVDACEVQSKEASAHPAKSKAPKEEASSNAPILRYVPLSRRKKGESPFTECLGILKVGDVEILKENFSTPLTTITK
QEIQESNIDHTKMTFAEKTNEGWI