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Lag0005228 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005228
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr6:12350418..12350912
RNA-Seq ExpressionLag0005228
SyntenyLag0005228
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]5.0e-2346.43Show/hide
Query:  MTSEEASSKIAASSNSYVGPITRSRTKETQYEDSQTPVIANKMLRRMTESAQLEIATAENLMLCQFISSSQQPNVTSSPDVMSVMMTDAGTSEERMAEVE
        M S++A+SK +A+S++Y GPITRSR+K       Q   IA  +L+++ ES +  I   EN +   + S+S +    + PDVMSVMM D    E  MAE+E
Subjt:  MTSEEASSKIAASSNSYVGPITRSRTKETQYEDSQTPVIANKMLRRMTESAQLEIATAENLMLCQFISSSQQPNVTSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLLKMVEEKDQEIASLKNQMESQDVVESSQTPAIK--DKGKIIAQDQ--SQHSVSIASLSVQQL
        +KI++L+K+V+E+D EIA+LK QM++++  ESSQTP +K  DKGK + Q+    Q S S+ASLSVQQL
Subjt:  KKISMLLKMVEEKDQEIASLKNQMESQDVVESSQTPAIK--DKGKIIAQDQ--SQHSVSIASLSVQQL

XP_031737053.1 uncharacterized protein LOC116402138 [Cucumis sativus]5.0e-2346.43Show/hide
Query:  MTSEEASSKIAASSNSYVGPITRSRTKETQYEDSQTPVIANKMLRRMTESAQLEIATAENLMLCQFISSSQQPNVTSSPDVMSVMMTDAGTSEERMAEVE
        M S++A+SK +A+S++Y GPITRSR+K       Q   IA  +L+++ ES +  I   EN +   + S+S +    + PDVMSVMM D    E  MAE+E
Subjt:  MTSEEASSKIAASSNSYVGPITRSRTKETQYEDSQTPVIANKMLRRMTESAQLEIATAENLMLCQFISSSQQPNVTSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLLKMVEEKDQEIASLKNQMESQDVVESSQTPAIK--DKGKIIAQDQ--SQHSVSIASLSVQQL
        +KI++L+K+V+E+D EIA+LK QM++++  ESSQTP +K  DKGK + Q+    Q S S+ASLSVQQL
Subjt:  KKISMLLKMVEEKDQEIASLKNQMESQDVVESSQTPAIK--DKGKIIAQDQ--SQHSVSIASLSVQQL

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]5.0e-2346.43Show/hide
Query:  MTSEEASSKIAASSNSYVGPITRSRTKETQYEDSQTPVIANKMLRRMTESAQLEIATAENLMLCQFISSSQQPNVTSSPDVMSVMMTDAGTSEERMAEVE
        M S++A+SK +A+S++Y GPITRSR+K       Q   IA  +L+++ ES +  I   EN +   + S+S +    + PDVMSVMM D    E  MAE+E
Subjt:  MTSEEASSKIAASSNSYVGPITRSRTKETQYEDSQTPVIANKMLRRMTESAQLEIATAENLMLCQFISSSQQPNVTSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLLKMVEEKDQEIASLKNQMESQDVVESSQTPAIK--DKGKIIAQDQ--SQHSVSIASLSVQQL
        +KI++L+K+V+E+D EIA+LK QM++++  ESSQTP +K  DKGK + Q+    Q S S+ASLSVQQL
Subjt:  KKISMLLKMVEEKDQEIASLKNQMESQDVVESSQTPAIK--DKGKIIAQDQ--SQHSVSIASLSVQQL

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]5.0e-2346.43Show/hide
Query:  MTSEEASSKIAASSNSYVGPITRSRTKETQYEDSQTPVIANKMLRRMTESAQLEIATAENLMLCQFISSSQQPNVTSSPDVMSVMMTDAGTSEERMAEVE
        M S++A+SK +A+S++Y GPITRSR+K       Q   IA  +L+++ ES +  I   EN +   + S+S +    + PDVMSVMM D    E  MAE+E
Subjt:  MTSEEASSKIAASSNSYVGPITRSRTKETQYEDSQTPVIANKMLRRMTESAQLEIATAENLMLCQFISSSQQPNVTSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLLKMVEEKDQEIASLKNQMESQDVVESSQTPAIK--DKGKIIAQDQ--SQHSVSIASLSVQQL
        +KI++L+K+V+E+D EIA+LK QM++++  ESSQTP +K  DKGK + Q+    Q S S+ASLSVQQL
Subjt:  KKISMLLKMVEEKDQEIASLKNQMESQDVVESSQTPAIK--DKGKIIAQDQ--SQHSVSIASLSVQQL

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]5.0e-2346.43Show/hide
Query:  MTSEEASSKIAASSNSYVGPITRSRTKETQYEDSQTPVIANKMLRRMTESAQLEIATAENLMLCQFISSSQQPNVTSSPDVMSVMMTDAGTSEERMAEVE
        M S++A+SK +A+S++Y GPITRSR+K       Q   IA  +L+++ ES +  I   EN +   + S+S +    + PDVMSVMM D    E  MAE+E
Subjt:  MTSEEASSKIAASSNSYVGPITRSRTKETQYEDSQTPVIANKMLRRMTESAQLEIATAENLMLCQFISSSQQPNVTSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLLKMVEEKDQEIASLKNQMESQDVVESSQTPAIK--DKGKIIAQDQ--SQHSVSIASLSVQQL
        +KI++L+K+V+E+D EIA+LK QM++++  ESSQTP +K  DKGK + Q+    Q S S+ASLSVQQL
Subjt:  KKISMLLKMVEEKDQEIASLKNQMESQDVVESSQTPAIK--DKGKIIAQDQ--SQHSVSIASLSVQQL

TrEMBL top hitse value%identityAlignment
A0A5A7TFN2 Ty3-gypsy retrotransposon protein3.3e-2043.45Show/hide
Query:  MTSEEASSKIAASSNSYVGPITRSRTKETQYEDSQTPVIANKMLRRMTESAQLEIATAENLMLCQFISSSQQPNVTSSPDVMSVMMTDAGTSEERMAEVE
        M S++A+S  + +S++Y GPITRSR+K    E  Q   +A ++L+++ ES +  I   EN +     S+S +    + PDV SVMM D  T E  M E+E
Subjt:  MTSEEASSKIAASSNSYVGPITRSRTKETQYEDSQTPVIANKMLRRMTESAQLEIATAENLMLCQFISSSQQPNVTSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLLKMVEEKDQEIASLKNQMESQDVVESSQTPAIK--DKGKIIAQDQ--SQHSVSIASLSVQQL
        +KI+ L+K VEE+D EI + + Q+ +++  ESSQTP +K  DKGK + Q+    Q SVS+ASLSVQQL
Subjt:  KKISMLLKMVEEKDQEIASLKNQMESQDVVESSQTPAIK--DKGKIIAQDQ--SQHSVSIASLSVQQL

A0A5A7VCU1 Ty3-gypsy retrotransposon protein5.9e-2245.24Show/hide
Query:  MTSEEASSKIAASSNSYVGPITRSRTKETQYEDSQTPVIANKMLRRMTESAQLEIATAENLMLCQFISSSQQPNVTSSPDVMSVMMTDAGTSEERMAEVE
        M S++A+S+ + +S+ Y GPITR+R+K    E  Q   +   +L+++ ES +  I   EN +     S+S +      PDVMSVMMTD  T+E  MAE+E
Subjt:  MTSEEASSKIAASSNSYVGPITRSRTKETQYEDSQTPVIANKMLRRMTESAQLEIATAENLMLCQFISSSQQPNVTSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLLKMVEEKDQEIASLKNQMESQDVVESSQTPAIK--DKGKIIAQDQ--SQHSVSIASLSVQQL
        +KI+ L+K+VEE+D EI +L+ QM++++ VESSQT  +K  DKGK + Q+    Q SVS+ASLSVQQL
Subjt:  KKISMLLKMVEEKDQEIASLKNQMESQDVVESSQTPAIK--DKGKIIAQDQ--SQHSVSIASLSVQQL

A0A5A7VFQ8 Ty3-gypsy retrotransposon protein7.2e-2042.86Show/hide
Query:  MTSEEASSKIAASSNSYVGPITRSRTKETQYEDSQTPVIANKMLRRMTESAQLEIATAENLMLCQFISSSQQPNVTSSPDVMSVMMTDAGTSEERMAEVE
        M S++A+SK + +S++Y+GPITRSR+K    E  Q   +A  +L+++ ES +  I   EN +     S+S +    + PDVMSVMM D  T E  M ++E
Subjt:  MTSEEASSKIAASSNSYVGPITRSRTKETQYEDSQTPVIANKMLRRMTESAQLEIATAENLMLCQFISSSQQPNVTSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLLKMVEEKDQEIASLKNQMESQDVVESSQTPAIK--DKGKIIAQD--QSQHSVSIASLSVQQL
        +K++ L+K++EE+D EI +L++QM +++  +SSQT  +K  DK K + Q+  Q Q SVS+ASLSVQQL
Subjt:  KKISMLLKMVEEKDQEIASLKNQMESQDVVESSQTPAIK--DKGKIIAQD--QSQHSVSIASLSVQQL

A0A5A7VH30 Ty3-gypsy retrotransposon protein4.2e-2043.11Show/hide
Query:  MTSEEASSKIAASSNSYVGPITRSRTKETQYEDSQTPVIANKMLRRMTESAQLEIATAENLMLCQFISSSQQPNVTSSPDVMSVMMTDAGTSEERMAEVE
        M S + +SK +A+S+SY G +T+S  K +  E  Q  V+  K L ++ ES +  I   +N +     S+S   +  S  +V+SVMM D  T+E  MAE+E
Subjt:  MTSEEASSKIAASSNSYVGPITRSRTKETQYEDSQTPVIANKMLRRMTESAQLEIATAENLMLCQFISSSQQPNVTSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLLKMVEEKDQEIASLKNQMESQDVVESSQTPAIK--DKGKIIAQD-QSQHSVSIASLSVQQL
        +KI+ L+K++EE+D EIA+LK+Q+++ +  ESS+TPA+K  DKGK++ Q+ Q+Q S+S+ SLSVQQL
Subjt:  KKISMLLKMVEEKDQEIASLKNQMESQDVVESSQTPAIK--DKGKIIAQD-QSQHSVSIASLSVQQL

A0A5D3BY54 Ty3-gypsy retrotransposon protein7.0e-2347.02Show/hide
Query:  MTSEEASSKIAASSNSYVGPITRSRTKETQYEDSQTPVIANKMLRRMTESAQLEIATAENLMLCQFISSSQQPNVTSSPDVMSVMMTDAGTSEERMAEVE
        M S++A+S  + +SN+Y GPITRSR+K    E  Q   +A  +L+++ ES +  I   EN +     SSS +    + PDVMSVMM D  T E  MAE+E
Subjt:  MTSEEASSKIAASSNSYVGPITRSRTKETQYEDSQTPVIANKMLRRMTESAQLEIATAENLMLCQFISSSQQPNVTSSPDVMSVMMTDAGTSEERMAEVE

Query:  KKISMLLKMVEEKDQEIASLKNQMESQDVVESSQTPAIK--DKGKIIAQDQ--SQHSVSIASLSVQQL
        +KI+ L+K VEE+D EI +L+ QM +++  ESSQTP +K  DKGK + Q+    Q SVS+ASLSVQQL
Subjt:  KKISMLLKMVEEKDQEIASLKNQMESQDVVESSQTPAIK--DKGKIIAQDQ--SQHSVSIASLSVQQL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTCTGAAGAAGCTTCTTCAAAGATCGCTGCTTCAAGCAACTCCTATGTGGGGCCAATTACTCGCAGTCGCACCAAGGAAACCCAATACGAAGATAGCCAAACTCC
TGTCATTGCAAATAAGATGCTGAGACGCATGACAGAATCTGCTCAACTTGAAATCGCCACTGCAGAAAATCTGATGCTTTGCCAATTCATCTCTTCTTCTCAGCAACCAA
ACGTGACCTCCAGTCCTGATGTGATGTCTGTTATGATGACTGATGCTGGAACTAGTGAAGAACGAATGGCTGAAGTTGAGAAGAAAATCAGCATGTTACTGAAGATGGTC
GAAGAGAAAGACCAAGAAATCGCCTCTCTCAAGAACCAGATGGAAAGTCAGGATGTTGTTGAATCGAGTCAGACCCCTGCCATCAAAGATAAGGGAAAGATTATTGCACA
AGATCAGTCACAACATTCTGTTTCTATTGCTTCACTGTCCGTTCAGCAGCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTTCTGAAGAAGCTTCTTCAAAGATCGCTGCTTCAAGCAACTCCTATGTGGGGCCAATTACTCGCAGTCGCACCAAGGAAACCCAATACGAAGATAGCCAAACTCC
TGTCATTGCAAATAAGATGCTGAGACGCATGACAGAATCTGCTCAACTTGAAATCGCCACTGCAGAAAATCTGATGCTTTGCCAATTCATCTCTTCTTCTCAGCAACCAA
ACGTGACCTCCAGTCCTGATGTGATGTCTGTTATGATGACTGATGCTGGAACTAGTGAAGAACGAATGGCTGAAGTTGAGAAGAAAATCAGCATGTTACTGAAGATGGTC
GAAGAGAAAGACCAAGAAATCGCCTCTCTCAAGAACCAGATGGAAAGTCAGGATGTTGTTGAATCGAGTCAGACCCCTGCCATCAAAGATAAGGGAAAGATTATTGCACA
AGATCAGTCACAACATTCTGTTTCTATTGCTTCACTGTCCGTTCAGCAGCTCTAG
Protein sequenceShow/hide protein sequence
MTSEEASSKIAASSNSYVGPITRSRTKETQYEDSQTPVIANKMLRRMTESAQLEIATAENLMLCQFISSSQQPNVTSSPDVMSVMMTDAGTSEERMAEVEKKISMLLKMV
EEKDQEIASLKNQMESQDVVESSQTPAIKDKGKIIAQDQSQHSVSIASLSVQQL