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Lag0005234 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005234
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr6:12516906..12518835
RNA-Seq ExpressionLag0005234
SyntenyLag0005234
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5758504.1 putative RNA-directed DNA polymerase [Helianthus annuus]1.6e-1876.47Show/hide
Query:  MEEGTKISDHLSVLNGIISELEVIEVKIEDEDKALGLILSLPTSYEHMKPILMYGKETLSFANVTEQV
        M+  TKISDHLSVLN I+SELE I VK+EDEDKAL LILSL +SYEHMKPILMYGKETL +A+VTE++
Subjt:  MEEGTKISDHLSVLNGIISELEVIEVKIEDEDKALGLILSLPTSYEHMKPILMYGKETLSFANVTEQV
KAF5765959.1 putative RNA-directed DNA polymerase [Helianthus annuus]1.6e-1876.47Show/hide
Query:  MEEGTKISDHLSVLNGIISELEVIEVKIEDEDKALGLILSLPTSYEHMKPILMYGKETLSFANVTEQV
        M+  TKISDHLSVLN I+SELE I VK+EDEDKAL LILSL +SYEHMKPILMYGKETL +A+VTE++
Subjt:  MEEGTKISDHLSVLNGIISELEVIEVKIEDEDKALGLILSLPTSYEHMKPILMYGKETLSFANVTEQV
PON56879.1 hypothetical protein TorRG33x02_294980 [Trema orientale]1.0e-1773.53Show/hide
Query:  MEEGTKISDHLSVLNGIISELEVIEVKIEDEDKALGLILSLPTSYEHMKPILMYGKETLSFANVTEQV
        M EGTKISDHLSVLNGI+SELE I VKIEDEDKAL  I S+P SYEHMKPIL++GKET+ F+ VT ++
Subjt:  MEEGTKISDHLSVLNGIISELEVIEVKIEDEDKALGLILSLPTSYEHMKPILMYGKETLSFANVTEQV
PON89231.1 hypothetical protein TorRG33x02_150940 [Trema orientale]1.8e-1773.53Show/hide
Query:  MEEGTKISDHLSVLNGIISELEVIEVKIEDEDKALGLILSLPTSYEHMKPILMYGKETLSFANVTEQV
        M EGTKISDHLSVLN I+SELEVI VKIEDEDKAL  I SLP SYEHMKPIL+YGKET+ F+ +  ++
Subjt:  MEEGTKISDHLSVLNGIISELEVIEVKIEDEDKALGLILSLPTSYEHMKPILMYGKETLSFANVTEQV
XP_022139673.1 uncharacterized protein LOC111010521 [Momordica charantia]4.2e-1979.41Show/hide
Query:  MEEGTKISDHLSVLNGIISELEVIEVKIEDEDKALGLILSLPTSYEHMKPILMYGKETLSFANVTEQV
        MEEG KISDHLS LN II ELE IEVKI+DEDKAL LILSLP SYEHMKPILMYGK+TL+FA VT ++
Subjt:  MEEGTKISDHLSVLNGIISELEVIEVKIEDEDKALGLILSLPTSYEHMKPILMYGKETLSFANVTEQV
TrEMBL top hitse value%identityAlignment
A0A2P5C765 Uncharacterized protein5.0e-1873.53Show/hide
Query:  MEEGTKISDHLSVLNGIISELEVIEVKIEDEDKALGLILSLPTSYEHMKPILMYGKETLSFANVTEQV
        M EGTKISDHLSVLNGI+SELE I VKIEDEDKAL  I S+P SYEHMKPIL++GKET+ F+ VT ++
Subjt:  MEEGTKISDHLSVLNGIISELEVIEVKIEDEDKALGLILSLPTSYEHMKPILMYGKETLSFANVTEQV
A0A2P5DGF9 Zinc finger, CCHC-type1.5e-1772.06Show/hide
Query:  MEEGTKISDHLSVLNGIISELEVIEVKIEDEDKALGLILSLPTSYEHMKPILMYGKETLSFANVTEQV
        M EGT ISDHLS+LNGI+ ELE I VKI+DEDKAL LI SLP+SYEHMKPIL+YGKET+ F+ VT  +
Subjt:  MEEGTKISDHLSVLNGIISELEVIEVKIEDEDKALGLILSLPTSYEHMKPILMYGKETLSFANVTEQV
A0A2P5EUL1 Uncharacterized protein8.6e-1873.53Show/hide
Query:  MEEGTKISDHLSVLNGIISELEVIEVKIEDEDKALGLILSLPTSYEHMKPILMYGKETLSFANVTEQV
        M EGTKISDHLSVLN I+SELEVI VKIEDEDKAL  I SLP SYEHMKPIL+YGKET+ F+ +  ++
Subjt:  MEEGTKISDHLSVLNGIISELEVIEVKIEDEDKALGLILSLPTSYEHMKPILMYGKETLSFANVTEQV
A0A6A3BK59 CCHC-type domain-containing protein2.5e-1770.59Show/hide
Query:  MEEGTKISDHLSVLNGIISELEVIEVKIEDEDKALGLILSLPTSYEHMKPILMYGKETLSFANVTEQV
        MEEGTKISDHLS LNGI+SELE I V+I+DEDKAL LI SLP+SYEHM+ +LMYGKE ++F+ VT ++
Subjt:  MEEGTKISDHLSVLNGIISELEVIEVKIEDEDKALGLILSLPTSYEHMKPILMYGKETLSFANVTEQV
A0A6J1CG82 uncharacterized protein LOC1110105212.0e-1979.41Show/hide
Query:  MEEGTKISDHLSVLNGIISELEVIEVKIEDEDKALGLILSLPTSYEHMKPILMYGKETLSFANVTEQV
        MEEG KISDHLS LN II ELE IEVKI+DEDKAL LILSLP SYEHMKPILMYGK+TL+FA VT ++
Subjt:  MEEGTKISDHLSVLNGIISELEVIEVKIEDEDKALGLILSLPTSYEHMKPILMYGKETLSFANVTEQV
SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.7e-1037.11Show/hide
Query:  MEEGTKISDHLSVLNGIISELEVIEVKIEDEDKALGLILSLPTSYEHMKPILMYGKETLSFANVTEQVRQRALGRIMTLSLLLGETVNSSEERQNSS
        M EGT    HL+V NG+I++L  + VKIE+EDKA+ L+ SLP+SY+++   +++GK T+   +VT              +LLL E +    E Q  +
Subjt:  MEEGTKISDHLSVLNGIISELEVIEVKIEDEDKALGLILSLPTSYEHMKPILMYGKETLSFANVTEQVRQRALGRIMTLSLLLGETVNSSEERQNSS
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAAGGTACGAAAATCTCAGATCATCTAAGTGTTCTCAATGGCATCATTTCGGAGCTAGAGGTGATCGAAGTTAAGATAGAGGATGAGGATAAGGCACTCGGGCT
TATCTTGTCACTTCCAACTTCTTATGAACACATGAAACCAATCTTGATGTACGGGAAGGAAACTTTAAGTTTTGCTAATGTTACTGAGCAGGTTCGTCAAAGGGCTCTGG
GTCGGATAATGACGTTGTCTCTTTTGTTAGGGGAGACGGTGAATTCCTCTGAAGAAAGACAGAATTCATCTTCATGTTATGCAAGGTGTGTGGTGGAAGTTATGTCGATG
ACTGAAGAACTTCCAGGAGCGTTATTCTCCTCTCTCAATCTCTTGGAATCTCTCTTCGTCACTCTCCAGACATCTCTCATACGACATACCCACTCTCTGGCCGGTTCGAG
CAAGGGCGTTCTCCTCTCTCTATCTCTTGGAATCTCTCTCCATCACTCTTCAGACTTCTCTCAAATAACATACACACTCTTTGACCGCTTCAAGCAAGGGCATTCTCCTA
TCTCAATCTCTTGGAATCTATCTCCATCACTCTCCAGACTTCTCTTAGATGATCCTCTGCTTCGAAGGACAATCCCTCATGAGCAAGAATCCAAAATCAACTCAGGATTA
AGACCAAGTTGTCTAGGTCGTCCTAGTGAAATAGAAAACCAACTAGTTAACGGTGTTATAACCAGTGGTTACTATTCTGCGGTCCGGTCTTATGCAAACTCATTGCATAG
GATACCCCCACTCGCATGTCTCCTACACGAACGCATTGGATCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAAGGTACGAAAATCTCAGATCATCTAAGTGTTCTCAATGGCATCATTTCGGAGCTAGAGGTGATCGAAGTTAAGATAGAGGATGAGGATAAGGCACTCGGGCT
TATCTTGTCACTTCCAACTTCTTATGAACACATGAAACCAATCTTGATGTACGGGAAGGAAACTTTAAGTTTTGCTAATGTTACTGAGCAGGTTCGTCAAAGGGCTCTGG
GTCGGATAATGACGTTGTCTCTTTTGTTAGGGGAGACGGTGAATTCCTCTGAAGAAAGACAGAATTCATCTTCATGTTATGCAAGGTGTGTGGTGGAAGTTATGTCGATG
ACTGAAGAACTTCCAGGAGCGTTATTCTCCTCTCTCAATCTCTTGGAATCTCTCTTCGTCACTCTCCAGACATCTCTCATACGACATACCCACTCTCTGGCCGGTTCGAG
CAAGGGCGTTCTCCTCTCTCTATCTCTTGGAATCTCTCTCCATCACTCTTCAGACTTCTCTCAAATAACATACACACTCTTTGACCGCTTCAAGCAAGGGCATTCTCCTA
TCTCAATCTCTTGGAATCTATCTCCATCACTCTCCAGACTTCTCTTAGATGATCCTCTGCTTCGAAGGACAATCCCTCATGAGCAAGAATCCAAAATCAACTCAGGATTA
AGACCAAGTTGTCTAGGTCGTCCTAGTGAAATAGAAAACCAACTAGTTAACGGTGTTATAACCAGTGGTTACTATTCTGCGGTCCGGTCTTATGCAAACTCATTGCATAG
GATACCCCCACTCGCATGTCTCCTACACGAACGCATTGGATCATAG
Protein sequenceShow/hide protein sequence
MEEGTKISDHLSVLNGIISELEVIEVKIEDEDKALGLILSLPTSYEHMKPILMYGKETLSFANVTEQVRQRALGRIMTLSLLLGETVNSSEERQNSSSCYARCVVEVMSM
TEELPGALFSSLNLLESLFVTLQTSLIRHTHSLAGSSKGVLLSLSLGISLHHSSDFSQITYTLFDRFKQGHSPISISWNLSPSLSRLLLDDPLLRRTIPHEQESKINSGL
RPSCLGRPSEIENQLVNGVITSGYYSAVRSYANSLHRIPPLACLLHERIGS