; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0005257 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005257
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr6:12798329..12799123
RNA-Seq ExpressionLag0005257
SyntenyLag0005257
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR005162 - Retrotransposon gag domain
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155000.1 uncharacterized protein LOC111022144 [Momordica charantia]2.4e-5949.8Show/hide
Query:  MNCNDPLKIRGAVFMLKDDARMWWNSVTGAEDHANHPISWERFKDLLYGYYFPETVKDDKEAEFLYLTQGSMTVVQYERKFTALSRFAPDLVSKPERKIK
        + C D  K++GAVFML+ +A  WW+S+  AEDHAN  I W RFKDLLY YY+ ETVKD KEAEFL+L QG+++V QYERKFT LSRFA +L+     KIK
Subjt:  MNCNDPLKIRGAVFMLKDDARMWWNSVTGAEDHANHPISWERFKDLLYGYYFPETVKDDKEAEFLYLTQGSMTVVQYERKFTALSRFAPDLVSKPERKIK

Query:  RFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSGVKRKPPPVMENQPQKVQRQQPERQAPAIPLCNVCRKHHVGQCDTGEKVC
        RF+KGL + IRG V L RP ++AEA+ GALIMDK+V+ K        SSSGVKRK  P   +   +  + Q + +    P+C  C+K H GQC TG K C
Subjt:  RFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSGVKRKPPPVMENQPQKVQRQQPERQAPAIPLCNVCRKHHVGQCDTGEKVC

Query:  FKCGKVGHYAKWCPAKGEPNQEKPALRAPQAPGQVVKQRAHVFALIKEKDEVGDA
        F+CG+  H+A+ CP      Q      +P    Q   QRA VFAL ++  E  DA
Subjt:  FKCGKVGHYAKWCPAKGEPNQEKPALRAPQAPGQVVKQRAHVFALIKEKDEVGDA

XP_022155872.1 uncharacterized protein LOC111022885 [Momordica charantia]1.3e-5755.81Show/hide
Query:  MLKDDARMWWNSVTGAEDHANHPISWERFKDLLYGYYFPETVKDDKEAEFLYLTQGSMTVVQYERKFTALSRFAPDLVSKPERKIKRFIKGLREEIRGSV
        ML+D+A  WW+SV  AEDHAN P++W RFKDLLY YY+PETVKD KEAEFL+L QG++TV QYERKFT LSRFA +L+     KIKRF+KGLR+ IRG V
Subjt:  MLKDDARMWWNSVTGAEDHANHPISWERFKDLLYGYYFPETVKDDKEAEFLYLTQGSMTVVQYERKFTALSRFAPDLVSKPERKIKRFIKGLREEIRGSV

Query:  ALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSGVKRKPPPVMENQPQKVQRQQPERQAPAIPLCNVCRKHHVGQCDTGEKVCFKCGKVGHYAKWCP
         L RP T+AEA+ GALIMDK+V+ +VQP     SSSGVKRK  P   +QP +   Q+P +Q    P+C  C+K + GQC TG   CF+C + GH+A+ C 
Subjt:  ALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSGVKRKPPPVMENQPQKVQRQQPERQAPAIPLCNVCRKHHVGQCDTGEKVCFKCGKVGHYAKWCP

Query:  AKGEPNQEKPALRAP
        +    N ++   RAP
Subjt:  AKGEPNQEKPALRAP

XP_022156326.1 uncharacterized protein LOC111023247 [Momordica charantia]5.5e-6452.16Show/hide
Query:  MNCNDPLKIRGAVFMLKDDARMWWNSVTGAEDHANHPISWERFKDLLYGYYFPETVKDDKEAEFLYLTQGSMTVVQYERKFTALSRFAPDLVSKPERKIK
        + C D  K++GAVFML+ +A  WW+SV  AED+AN PI W RFK+LLY YY+PETVKD KEAEFL+L QG+++V QYERKFT LSRFA +L+     KIK
Subjt:  MNCNDPLKIRGAVFMLKDDARMWWNSVTGAEDHANHPISWERFKDLLYGYYFPETVKDDKEAEFLYLTQGSMTVVQYERKFTALSRFAPDLVSKPERKIK

Query:  RFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSGVKRKPPPVMENQPQKVQRQQPERQAPAIPLCNVCRKHHVGQCDTGEKVC
        RF+KGLR+ IRG V L RPTT+AEA+ GAL+MDK+V+ K  P     SSSGVKRK P    +   +  ++Q + Q    P+C  C+K H GQC TG K C
Subjt:  RFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSGVKRKPPPVMENQPQKVQRQQPERQAPAIPLCNVCRKHHVGQCDTGEKVC

Query:  FKCGKVGHYAKWCPAKGEPNQEKPALRAPQAPGQVVKQRAHVFALIKEKDEVGDA
        F+CG+ GH+A+ CP      Q       P    Q   QRA VFAL ++  E  DA
Subjt:  FKCGKVGHYAKWCPAKGEPNQEKPALRAPQAPGQVVKQRAHVFALIKEKDEVGDA

XP_022158750.1 uncharacterized protein LOC111025215 [Momordica charantia]4.2e-5647.27Show/hide
Query:  MNCNDPLKIRGAVFMLKDDARMWWNSVTGAEDHANHPISWERFKDLLYGYYFPETVKDDKEAEFLYLTQGSMTVVQYERKFTALSRFAPDLVSKPERKIK
        + C+D  K+RGAVFML+ +A  WW SV  AEDHAN P++W RFKDLLY YYFP TV+++K  EFL LTQGS+TV +YERKFT LSRF    +   + KI 
Subjt:  MNCNDPLKIRGAVFMLKDDARMWWNSVTGAEDHANHPISWERFKDLLYGYYFPETVKDDKEAEFLYLTQGSMTVVQYERKFTALSRFAPDLVSKPERKIK

Query:  RFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSGVKRKPPPVMENQPQKVQRQQPERQAPAIPLCNVCRKHHVGQCDTGEKVC
        +FI GLR EI+G + L  PTT+A A+  AL+MDK    + Q +    SSSGVKRK      +QP +  +   +RQ  A P+C  C+K H G C  G+++C
Subjt:  RFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSGVKRKPPPVMENQPQKVQRQQPERQAPAIPLCNVCRKHHVGQCDTGEKVC

Query:  FKCGKVGHYAKWCPAKGEPNQEKPALRAPQAPGQVVKQRAHVFALIKEKDEVGDAV
        ++C K GH+A+ CP  G   Q         A  Q    RA VFAL +   E  +AV
Subjt:  FKCGKVGHYAKWCPAKGEPNQEKPALRAPQAPGQVVKQRAHVFALIKEKDEVGDAV

XP_022159077.1 uncharacterized protein LOC111025517 [Momordica charantia]1.5e-5853.99Show/hide
Query:  MNCNDPLKIRGAVFMLKDDARMWWNSVTGAEDHANHPISWERFKDLLYGYYFPETVKDDKEAEFLYLTQGSMTVVQYERKFTALSRFAPDLVSKPERKIK
        ++C +  K++G VFML+ +A  WW+SV  AEDHAN PI+W RFKDLLY YY+P+T+KD KEAEFL+ + G++TV QYERKFT LS FA +L+     KIK
Subjt:  MNCNDPLKIRGAVFMLKDDARMWWNSVTGAEDHANHPISWERFKDLLYGYYFPETVKDDKEAEFLYLTQGSMTVVQYERKFTALSRFAPDLVSKPERKIK

Query:  RFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSGVKRKPPPVMENQPQKVQRQQPERQAPAIPLCNVCRKHHVGQCDTGEKVC
        RF+KGLR+ IRG V L RP T+AEA+ G LIMD +V+  VQP     SSSGVKRK  P   +QP +   Q+P +Q    P+C  C+K   GQC TG + C
Subjt:  RFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSGVKRKPPPVMENQPQKVQRQQPERQAPAIPLCNVCRKHHVGQCDTGEKVC

Query:  FKCGKVGHYAKWC
        F+CG+ GH+A+ C
Subjt:  FKCGKVGHYAKWC

TrEMBL top hitse value%identityAlignment
A0A6J1DL73 uncharacterized protein LOC1110221441.2e-5949.8Show/hide
Query:  MNCNDPLKIRGAVFMLKDDARMWWNSVTGAEDHANHPISWERFKDLLYGYYFPETVKDDKEAEFLYLTQGSMTVVQYERKFTALSRFAPDLVSKPERKIK
        + C D  K++GAVFML+ +A  WW+S+  AEDHAN  I W RFKDLLY YY+ ETVKD KEAEFL+L QG+++V QYERKFT LSRFA +L+     KIK
Subjt:  MNCNDPLKIRGAVFMLKDDARMWWNSVTGAEDHANHPISWERFKDLLYGYYFPETVKDDKEAEFLYLTQGSMTVVQYERKFTALSRFAPDLVSKPERKIK

Query:  RFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSGVKRKPPPVMENQPQKVQRQQPERQAPAIPLCNVCRKHHVGQCDTGEKVC
        RF+KGL + IRG V L RP ++AEA+ GALIMDK+V+ K        SSSGVKRK  P   +   +  + Q + +    P+C  C+K H GQC TG K C
Subjt:  RFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSGVKRKPPPVMENQPQKVQRQQPERQAPAIPLCNVCRKHHVGQCDTGEKVC

Query:  FKCGKVGHYAKWCPAKGEPNQEKPALRAPQAPGQVVKQRAHVFALIKEKDEVGDA
        F+CG+  H+A+ CP      Q      +P    Q   QRA VFAL ++  E  DA
Subjt:  FKCGKVGHYAKWCPAKGEPNQEKPALRAPQAPGQVVKQRAHVFALIKEKDEVGDA

A0A6J1DQJ4 uncharacterized protein LOC1110228856.3e-5855.81Show/hide
Query:  MLKDDARMWWNSVTGAEDHANHPISWERFKDLLYGYYFPETVKDDKEAEFLYLTQGSMTVVQYERKFTALSRFAPDLVSKPERKIKRFIKGLREEIRGSV
        ML+D+A  WW+SV  AEDHAN P++W RFKDLLY YY+PETVKD KEAEFL+L QG++TV QYERKFT LSRFA +L+     KIKRF+KGLR+ IRG V
Subjt:  MLKDDARMWWNSVTGAEDHANHPISWERFKDLLYGYYFPETVKDDKEAEFLYLTQGSMTVVQYERKFTALSRFAPDLVSKPERKIKRFIKGLREEIRGSV

Query:  ALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSGVKRKPPPVMENQPQKVQRQQPERQAPAIPLCNVCRKHHVGQCDTGEKVCFKCGKVGHYAKWCP
         L RP T+AEA+ GALIMDK+V+ +VQP     SSSGVKRK  P   +QP +   Q+P +Q    P+C  C+K + GQC TG   CF+C + GH+A+ C 
Subjt:  ALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSGVKRKPPPVMENQPQKVQRQQPERQAPAIPLCNVCRKHHVGQCDTGEKVCFKCGKVGHYAKWCP

Query:  AKGEPNQEKPALRAP
        +    N ++   RAP
Subjt:  AKGEPNQEKPALRAP

A0A6J1DUM2 uncharacterized protein LOC1110232472.7e-6452.16Show/hide
Query:  MNCNDPLKIRGAVFMLKDDARMWWNSVTGAEDHANHPISWERFKDLLYGYYFPETVKDDKEAEFLYLTQGSMTVVQYERKFTALSRFAPDLVSKPERKIK
        + C D  K++GAVFML+ +A  WW+SV  AED+AN PI W RFK+LLY YY+PETVKD KEAEFL+L QG+++V QYERKFT LSRFA +L+     KIK
Subjt:  MNCNDPLKIRGAVFMLKDDARMWWNSVTGAEDHANHPISWERFKDLLYGYYFPETVKDDKEAEFLYLTQGSMTVVQYERKFTALSRFAPDLVSKPERKIK

Query:  RFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSGVKRKPPPVMENQPQKVQRQQPERQAPAIPLCNVCRKHHVGQCDTGEKVC
        RF+KGLR+ IRG V L RPTT+AEA+ GAL+MDK+V+ K  P     SSSGVKRK P    +   +  ++Q + Q    P+C  C+K H GQC TG K C
Subjt:  RFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSGVKRKPPPVMENQPQKVQRQQPERQAPAIPLCNVCRKHHVGQCDTGEKVC

Query:  FKCGKVGHYAKWCPAKGEPNQEKPALRAPQAPGQVVKQRAHVFALIKEKDEVGDA
        F+CG+ GH+A+ CP      Q       P    Q   QRA VFAL ++  E  DA
Subjt:  FKCGKVGHYAKWCPAKGEPNQEKPALRAPQAPGQVVKQRAHVFALIKEKDEVGDA

A0A6J1DWP4 uncharacterized protein LOC1110252152.0e-5647.27Show/hide
Query:  MNCNDPLKIRGAVFMLKDDARMWWNSVTGAEDHANHPISWERFKDLLYGYYFPETVKDDKEAEFLYLTQGSMTVVQYERKFTALSRFAPDLVSKPERKIK
        + C+D  K+RGAVFML+ +A  WW SV  AEDHAN P++W RFKDLLY YYFP TV+++K  EFL LTQGS+TV +YERKFT LSRF    +   + KI 
Subjt:  MNCNDPLKIRGAVFMLKDDARMWWNSVTGAEDHANHPISWERFKDLLYGYYFPETVKDDKEAEFLYLTQGSMTVVQYERKFTALSRFAPDLVSKPERKIK

Query:  RFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSGVKRKPPPVMENQPQKVQRQQPERQAPAIPLCNVCRKHHVGQCDTGEKVC
        +FI GLR EI+G + L  PTT+A A+  AL+MDK    + Q +    SSSGVKRK      +QP +  +   +RQ  A P+C  C+K H G C  G+++C
Subjt:  RFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSGVKRKPPPVMENQPQKVQRQQPERQAPAIPLCNVCRKHHVGQCDTGEKVC

Query:  FKCGKVGHYAKWCPAKGEPNQEKPALRAPQAPGQVVKQRAHVFALIKEKDEVGDAV
        ++C K GH+A+ CP  G   Q         A  Q    RA VFAL +   E  +AV
Subjt:  FKCGKVGHYAKWCPAKGEPNQEKPALRAPQAPGQVVKQRAHVFALIKEKDEVGDAV

A0A6J1DYU5 uncharacterized protein LOC1110255177.5e-5953.99Show/hide
Query:  MNCNDPLKIRGAVFMLKDDARMWWNSVTGAEDHANHPISWERFKDLLYGYYFPETVKDDKEAEFLYLTQGSMTVVQYERKFTALSRFAPDLVSKPERKIK
        ++C +  K++G VFML+ +A  WW+SV  AEDHAN PI+W RFKDLLY YY+P+T+KD KEAEFL+ + G++TV QYERKFT LS FA +L+     KIK
Subjt:  MNCNDPLKIRGAVFMLKDDARMWWNSVTGAEDHANHPISWERFKDLLYGYYFPETVKDDKEAEFLYLTQGSMTVVQYERKFTALSRFAPDLVSKPERKIK

Query:  RFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSGVKRKPPPVMENQPQKVQRQQPERQAPAIPLCNVCRKHHVGQCDTGEKVC
        RF+KGLR+ IRG V L RP T+AEA+ G LIMD +V+  VQP     SSSGVKRK  P   +QP +   Q+P +Q    P+C  C+K   GQC TG + C
Subjt:  RFIKGLREEIRGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSGVKRKPPPVMENQPQKVQRQQPERQAPAIPLCNVCRKHHVGQCDTGEKVC

Query:  FKCGKVGHYAKWC
        F+CG+ GH+A+ C
Subjt:  FKCGKVGHYAKWC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTGCAACGATCCCTTGAAGATCAGAGGAGCGGTCTTCATGCTAAAGGATGATGCTCGCATGTGGTGGAATTCTGTGACAGGTGCCGAGGATCATGCTAACCATCC
AATTTCGTGGGAAAGGTTCAAAGACCTATTGTATGGTTACTACTTCCCGGAGACAGTCAAGGATGACAAGGAGGCTGAATTCCTTTATTTGACCCAGGGAAGTATGACCG
TAGTGCAGTACGAGAGGAAGTTTACTGCGCTATCACGCTTTGCTCCTGACCTGGTCAGCAAGCCGGAGCGAAAGATCAAGAGGTTCATTAAGGGCCTCCGTGAGGAGATT
CGTGGTTCTGTGGCCCTGAGCAGACCCACAACCTTCGCTGAGGCACTCACAGGCGCGTTGATCATGGATAAAAACGTGGCAAGAAAGGTGCAACCTCGTTGGGGAGAACC
TTCTTCGTCAGGAGTTAAAAGGAAACCTCCCCCAGTAATGGAGAATCAACCGCAGAAAGTCCAACGCCAACAACCTGAGAGGCAGGCTCCTGCCATACCCTTGTGCAACG
TGTGCCGCAAGCACCACGTGGGTCAGTGTGACACAGGTGAGAAAGTCTGTTTCAAGTGTGGAAAGGTAGGTCACTATGCGAAGTGGTGTCCCGCCAAAGGCGAGCCTAAT
CAAGAGAAGCCAGCTTTGAGAGCCCCTCAAGCGCCAGGGCAGGTTGTCAAGCAAAGGGCGCATGTCTTTGCACTCATTAAAGAGAAGGATGAAGTTGGCGATGCCGTAGC
GGCATGTATGCTTTCTATAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACTGCAACGATCCCTTGAAGATCAGAGGAGCGGTCTTCATGCTAAAGGATGATGCTCGCATGTGGTGGAATTCTGTGACAGGTGCCGAGGATCATGCTAACCATCC
AATTTCGTGGGAAAGGTTCAAAGACCTATTGTATGGTTACTACTTCCCGGAGACAGTCAAGGATGACAAGGAGGCTGAATTCCTTTATTTGACCCAGGGAAGTATGACCG
TAGTGCAGTACGAGAGGAAGTTTACTGCGCTATCACGCTTTGCTCCTGACCTGGTCAGCAAGCCGGAGCGAAAGATCAAGAGGTTCATTAAGGGCCTCCGTGAGGAGATT
CGTGGTTCTGTGGCCCTGAGCAGACCCACAACCTTCGCTGAGGCACTCACAGGCGCGTTGATCATGGATAAAAACGTGGCAAGAAAGGTGCAACCTCGTTGGGGAGAACC
TTCTTCGTCAGGAGTTAAAAGGAAACCTCCCCCAGTAATGGAGAATCAACCGCAGAAAGTCCAACGCCAACAACCTGAGAGGCAGGCTCCTGCCATACCCTTGTGCAACG
TGTGCCGCAAGCACCACGTGGGTCAGTGTGACACAGGTGAGAAAGTCTGTTTCAAGTGTGGAAAGGTAGGTCACTATGCGAAGTGGTGTCCCGCCAAAGGCGAGCCTAAT
CAAGAGAAGCCAGCTTTGAGAGCCCCTCAAGCGCCAGGGCAGGTTGTCAAGCAAAGGGCGCATGTCTTTGCACTCATTAAAGAGAAGGATGAAGTTGGCGATGCCGTAGC
GGCATGTATGCTTTCTATAGCTTAA
Protein sequenceShow/hide protein sequence
MNCNDPLKIRGAVFMLKDDARMWWNSVTGAEDHANHPISWERFKDLLYGYYFPETVKDDKEAEFLYLTQGSMTVVQYERKFTALSRFAPDLVSKPERKIKRFIKGLREEI
RGSVALSRPTTFAEALTGALIMDKNVARKVQPRWGEPSSSGVKRKPPPVMENQPQKVQRQQPERQAPAIPLCNVCRKHHVGQCDTGEKVCFKCGKVGHYAKWCPAKGEPN
QEKPALRAPQAPGQVVKQRAHVFALIKEKDEVGDAVAACMLSIA