| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0048289.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] | 2.0e-44 | 50 | Show/hide |
Query: TRNRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVF
T N +ES + ++ +E ++P + LL +Y DVF++ + LP KRAVDH+I G + +NVRPYKY H Q+ EIEKL+ EML TGI+RP +SPFSS V
Subjt: TRNRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVF
Query: LIKKKDGGWRFCVDCRVLN----------------------------------------QEEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVF
L+KKKDGGWRFCVD R LN +EED+EKTAFRTHEGHYEF+VMPFGL N TFQSLMNQVF
Subjt: LIKKKDGGWRFCVDCRVLN----------------------------------------QEEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVF
Query: RLFL
+ FL
Subjt: RLFL
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| KAA0056659.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] | 6.9e-45 | 51.23 | Show/hide |
Query: NRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLI
N G +S + ++ +E +P + LL +Y DVFN LP KR VDH+I+ G + +NVRPYKY H QK EIEKL++EML TGI+RP +SPFSS V L+
Subjt: NRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLI
Query: KKKDGGWRFCVDCRVLN----------------------------------------QEEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVFRL
KKKDGGWRFCVD R LN +EED+EKTAFRTHEGHYEFLVMPFGL N TFQSLMNQVF+
Subjt: KKKDGGWRFCVDCRVLN----------------------------------------QEEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVFRL
Query: FLR
FLR
Subjt: FLR
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| KAA0065995.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] | 1.0e-43 | 50.25 | Show/hide |
Query: NRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLI
N +ES ++ +E +P + LL +Y DVF++ LP KRAVDH+I G + +NVRPYKY H QK EIEKL+ EML TGI+RP +SPFSS V L+
Subjt: NRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLI
Query: KKKDGGWRFCVDCRVLN----------------------------------------QEEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVFRL
KKKDGGWRFCVD LN +EED+EKTAFRTHEGHYEF+VMPFGL N TFQSLMNQVF+
Subjt: KKKDGGWRFCVDCRVLN----------------------------------------QEEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVFRL
Query: FLR
FLR
Subjt: FLR
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| KAA0066816.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] | 1.0e-43 | 49.75 | Show/hide |
Query: NRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLI
N +S + ++ +E +P + LL +Y DVFN LP KR +DH+I+ G + +NVRPYKY H QK EIEKL++EML TGI+RP +SPFSS V L+
Subjt: NRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLI
Query: KKKDGGWRFCVDCRVLN----------------------------------------QEEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVFRL
KKKDGGWRFCVD R LN +EED+EKTAFRTHEGHYEF+VMPFGL N TFQSLMNQVF+
Subjt: KKKDGGWRFCVDCRVLN----------------------------------------QEEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVFRL
Query: FLR
FLR
Subjt: FLR
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| TYK07971.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] | 2.0e-44 | 50 | Show/hide |
Query: TRNRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVF
T N +ES + ++ +E ++P + LL +Y DVF++ + LP KRAVDH+I G + +NVRPYKY H Q+ EIEKL+ EML TGI+RP +SPFSS V
Subjt: TRNRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVF
Query: LIKKKDGGWRFCVDCRVLN----------------------------------------QEEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVF
L+KKKDGGWRFCVD R LN +EED+EKTAFRTHEGHYEF+VMPFGL N TFQSLMNQVF
Subjt: LIKKKDGGWRFCVDCRVLN----------------------------------------QEEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVF
Query: RLFL
+ FL
Subjt: RLFL
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7U4B9 Ty3/gypsy retrotransposon protein | 9.7e-45 | 50 | Show/hide |
Query: TRNRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVF
T N +ES + ++ +E ++P + LL +Y DVF++ + LP KRAVDH+I G + +NVRPYKY H Q+ EIEKL+ EML TGI+RP +SPFSS V
Subjt: TRNRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVF
Query: LIKKKDGGWRFCVDCRVLN----------------------------------------QEEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVF
L+KKKDGGWRFCVD R LN +EED+EKTAFRTHEGHYEF+VMPFGL N TFQSLMNQVF
Subjt: LIKKKDGGWRFCVDCRVLN----------------------------------------QEEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVF
Query: RLFL
+ FL
Subjt: RLFL
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| A0A5A7UT21 Ty3/gypsy retrotransposon protein | 3.3e-45 | 51.23 | Show/hide |
Query: NRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLI
N G +S + ++ +E +P + LL +Y DVFN LP KR VDH+I+ G + +NVRPYKY H QK EIEKL++EML TGI+RP +SPFSS V L+
Subjt: NRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLI
Query: KKKDGGWRFCVDCRVLN----------------------------------------QEEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVFRL
KKKDGGWRFCVD R LN +EED+EKTAFRTHEGHYEFLVMPFGL N TFQSLMNQVF+
Subjt: KKKDGGWRFCVDCRVLN----------------------------------------QEEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVFRL
Query: FLR
FLR
Subjt: FLR
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| A0A5A7VJU2 Ty3/gypsy retrotransposon protein | 4.8e-44 | 50.25 | Show/hide |
Query: NRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLI
N +ES ++ +E +P + LL +Y DVF++ LP KRAVDH+I G + +NVRPYKY H QK EIEKL+ EML TGI+RP +SPFSS V L+
Subjt: NRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLI
Query: KKKDGGWRFCVDCRVLN----------------------------------------QEEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVFRL
KKKDGGWRFCVD LN +EED+EKTAFRTHEGHYEF+VMPFGL N TFQSLMNQVF+
Subjt: KKKDGGWRFCVDCRVLN----------------------------------------QEEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVFRL
Query: FLR
FLR
Subjt: FLR
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| A0A5A7VK94 Ty3/gypsy retrotransposon protein | 4.8e-44 | 49.75 | Show/hide |
Query: NRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLI
N +S + ++ +E +P + LL +Y DVFN LP KR +DH+I+ G + +NVRPYKY H QK EIEKL++EML TGI+RP +SPFSS V L+
Subjt: NRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLI
Query: KKKDGGWRFCVDCRVLN----------------------------------------QEEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVFRL
KKKDGGWRFCVD R LN +EED+EKTAFRTHEGHYEF+VMPFGL N TFQSLMNQVF+
Subjt: KKKDGGWRFCVDCRVLN----------------------------------------QEEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVFRL
Query: FLR
FLR
Subjt: FLR
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| A0A5D3C7Y7 Ty3/gypsy retrotransposon protein | 9.7e-45 | 50 | Show/hide |
Query: TRNRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVF
T N +ES + ++ +E ++P + LL +Y DVF++ + LP KRAVDH+I G + +NVRPYKY H Q+ EIEKL+ EML TGI+RP +SPFSS V
Subjt: TRNRGRESNSRNEEANETKMPGEVLSLLGEYEDVFNLLEGLPSKRAVDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVF
Query: LIKKKDGGWRFCVDCRVLN----------------------------------------QEEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVF
L+KKKDGGWRFCVD R LN +EED+EKTAFRTHEGHYEF+VMPFGL N TFQSLMNQVF
Subjt: LIKKKDGGWRFCVDCRVLN----------------------------------------QEEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVF
Query: RLFL
+ FL
Subjt: RLFL
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04323 Retrovirus-related Pol polyprotein from transposon 17.6 | 6.6e-14 | 30.26 | Show/hide |
Query: NETKMPGEVLSLLGEYEDV-FNLLEGLPSKRAVDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLIKKKDGG-----W
NE K + +LL +Y D+ ++ + L H I K H L Y Y A + E+E + +ML+ GI+R NSP++S ++++ KK +
Subjt: NETKMPGEVLSLLGEYEDV-FNLLEGLPSKRAVDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLIKKKDGG-----W
Query: RFCVDCRVLNQ----------------------------------------EEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVFRLFL
R +D R LN+ E V KTAF T GHYE+L MPFGL N TFQ MN + R L
Subjt: RFCVDCRVLNQ----------------------------------------EEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVFRLFL
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| P20825 Retrovirus-related Pol polyprotein from transposon 297 | 6.1e-12 | 30.61 | Show/hide |
Query: RPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLIKKKDGG-----WRFCVDCRVLNQ-------------------------------------
+ Y A + E+E + EML+ G++R NSP++S +++ KK +R +D R LN+
Subjt: RPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLIKKKDGG-----WRFCVDCRVLNQ-------------------------------------
Query: ---EEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVFRLFL
EE + KTAF T GHYE+L MPFGL N TFQ MN + R L
Subjt: ---EEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVFRLFL
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| Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein | 1.0e-14 | 32.9 | Show/hide |
Query: VDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLIKKKDGGWRFCVDCRVLN---------------------------
V H I +K G L ++PY + EI K++ ++L + P SP SS V L+ KKDG +R CVD R LN
Subjt: VDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLIKKKDGGWRFCVDCRVLN---------------------------
Query: -------------QEEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVFR
+ +D KTAF T G YE+ VMPFGL+N +TF M FR
Subjt: -------------QEEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVFR
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| Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus | 9.5e-13 | 28.57 | Show/hide |
Query: SLLGEYEDVFN-LLEGLPSKRAVDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLIKKK-----DGGWRFCVDCRVLN
SLLGE+ +F L G+ + AV +I + + + Y Y + E+E+ + E+L GI+RP NSP++S ++++ KK + +R VD + LN
Subjt: SLLGEYEDVFN-LLEGLPSKRAVDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLIKKK-----DGGWRFCVDCRVLN
Query: ----------------------------------------QEEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVFR
+E D+ KTAF T G YEFL +PFGL N FQ +++ + R
Subjt: ----------------------------------------QEEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVFR
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| Q99315 Transposon Ty3-G Gag-Pol polyprotein | 1.0e-14 | 32.9 | Show/hide |
Query: VDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLIKKKDGGWRFCVDCRVLN---------------------------
V H I +K G L ++PY + EI K++ ++L + P SP SS V L+ KKDG +R CVD R LN
Subjt: VDHQIVMKEGHELVNVRPYKYAHAQKAEIEKLMMEMLSTGIVRPRNSPFSSRVFLIKKKDGGWRFCVDCRVLN---------------------------
Query: -------------QEEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVFR
+ +D KTAF T G YE+ VMPFGL+N +TF M FR
Subjt: -------------QEEDVEKTAFRTHEGHYEFLVMPFGLMNGLTTFQSLMNQVFR
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