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Lag0005290 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005290
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr6:13633483..13635081
RNA-Seq ExpressionLag0005290
SyntenyLag0005290
Gene Ontology termsGO:0043170 - macromolecule metabolic process (biological process)
GO:0044237 - cellular metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.2e-0733.33Show/hide
Query:  WKKPPSNAWKLNSDASWLENSGQGGLGWVVRDSFGSLICNGMKQTKKNWGISTLEAMAILEGINCVKQTCIDLQC-DLKVESDSKVVIETINDISEDLSK
        WK P SN+WKLN++A+W  ++  GG+GW++RD  G +I    +  +    I+ LE MAI EG+  ++Q      C  + +ESDS   I  ++   +D ++
Subjt:  WKKPPSNAWKLNSDASWLENSGQGGLGWVVRDSFGSLICNGMKQTKKNWGISTLEAMAILEGINCVKQTCIDLQC-DLKVESDSKVVIETINDISEDLSK

Query:  VSNIIDMI
        +  +++ I
Subjt:  VSNIIDMI

XP_022154990.1 uncharacterized protein LOC111022134 isoform X1 [Momordica charantia]3.2e-0838.04Show/hide
Query:  WKKPPSNAWKLNSDASWLENSGQGGLGWVVRDSFGSLICNGMKQTKKNWGISTLEAMAILEGINCVKQTCIDLQC-DLKVESDSKVVIETIN
        WK P SN+WKLN+DA+W  ++   G+GW++RD  G +I  G +  +    I+ LE MAI EG+  ++Q      C  + +ESDS   I  ++
Subjt:  WKKPPSNAWKLNSDASWLENSGQGGLGWVVRDSFGSLICNGMKQTKKNWGISTLEAMAILEGINCVKQTCIDLQC-DLKVESDSKVVIETIN

XP_022154991.1 uncharacterized protein LOC111022134 isoform X2 [Momordica charantia]3.2e-0838.04Show/hide
Query:  WKKPPSNAWKLNSDASWLENSGQGGLGWVVRDSFGSLICNGMKQTKKNWGISTLEAMAILEGINCVKQTCIDLQC-DLKVESDSKVVIETIN
        WK P SN+WKLN+DA+W  ++   G+GW++RD  G +I  G +  +    I+ LE MAI EG+  ++Q      C  + +ESDS   I  ++
Subjt:  WKKPPSNAWKLNSDASWLENSGQGGLGWVVRDSFGSLICNGMKQTKKNWGISTLEAMAILEGINCVKQTCIDLQC-DLKVESDSKVVIETIN

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]3.2e-0834.58Show/hide
Query:  WKKPPSNAWKLNSDASWLENSGQGGLGWVVRDSFGSLICNGMKQTKKNWGISTLEAMAILEGINCVKQTCIDLQCDLKVESDSKVVIETINDISEDLSKV
        W+ PP + W LN+DASW +++ +GG+GW++R   G ++  G +  +    +  LEA AILEG+     T + +   L +E+DS  V   +N   EDL+K 
Subjt:  WKKPPSNAWKLNSDASWLENSGQGGLGWVVRDSFGSLICNGMKQTKKNWGISTLEAMAILEGINCVKQTCIDLQCDLKVESDSKVVIETINDISEDLSKV

Query:  SNIIDMI
          +++ I
Subjt:  SNIIDMI

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]2.4e-0833.93Show/hide
Query:  WKKPPSNAWKLNSDASWLENSGQGGLGWVVRDSFGSLICNGMKQTKKNWGISTLEAMAILEGINCVKQT-CIDLQCD----LKVESDSKVVIETINDISE
        WK P SN+WKLN+DA+W  ++  GG+GW++RD  G +I    +  +    I+ LE MAI EG+  ++Q  C  +Q +    + +ESDS   I  ++   +
Subjt:  WKKPPSNAWKLNSDASWLENSGQGGLGWVVRDSFGSLICNGMKQTKKNWGISTLEAMAILEGINCVKQT-CIDLQCD----LKVESDSKVVIETINDISE

Query:  DLSKVSNIIDMI
        D +++  +++ I
Subjt:  DLSKVSNIIDMI

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134125.8e-0833.33Show/hide
Query:  WKKPPSNAWKLNSDASWLENSGQGGLGWVVRDSFGSLICNGMKQTKKNWGISTLEAMAILEGINCVKQTCIDLQC-DLKVESDSKVVIETINDISEDLSK
        WK P SN+WKLN++A+W  ++  GG+GW++RD  G +I    +  +    I+ LE MAI EG+  ++Q      C  + +ESDS   I  ++   +D ++
Subjt:  WKKPPSNAWKLNSDASWLENSGQGGLGWVVRDSFGSLICNGMKQTKKNWGISTLEAMAILEGINCVKQTCIDLQC-DLKVESDSKVVIETINDISEDLSK

Query:  VSNIIDMI
        +  +++ I
Subjt:  VSNIIDMI

A0A6J1DL64 uncharacterized protein LOC111022134 isoform X11.5e-0838.04Show/hide
Query:  WKKPPSNAWKLNSDASWLENSGQGGLGWVVRDSFGSLICNGMKQTKKNWGISTLEAMAILEGINCVKQTCIDLQC-DLKVESDSKVVIETIN
        WK P SN+WKLN+DA+W  ++   G+GW++RD  G +I  G +  +    I+ LE MAI EG+  ++Q      C  + +ESDS   I  ++
Subjt:  WKKPPSNAWKLNSDASWLENSGQGGLGWVVRDSFGSLICNGMKQTKKNWGISTLEAMAILEGINCVKQTCIDLQC-DLKVESDSKVVIETIN

A0A6J1DNV9 uncharacterized protein LOC1110224031.5e-0834.58Show/hide
Query:  WKKPPSNAWKLNSDASWLENSGQGGLGWVVRDSFGSLICNGMKQTKKNWGISTLEAMAILEGINCVKQTCIDLQCDLKVESDSKVVIETINDISEDLSKV
        W+ PP + W LN+DASW +++ +GG+GW++R   G ++  G +  +    +  LEA AILEG+     T + +   L +E+DS  V   +N   EDL+K 
Subjt:  WKKPPSNAWKLNSDASWLENSGQGGLGWVVRDSFGSLICNGMKQTKKNWGISTLEAMAILEGINCVKQTCIDLQCDLKVESDSKVVIETINDISEDLSKV

Query:  SNIIDMI
          +++ I
Subjt:  SNIIDMI

A0A6J1DQC9 uncharacterized protein LOC111022134 isoform X21.5e-0838.04Show/hide
Query:  WKKPPSNAWKLNSDASWLENSGQGGLGWVVRDSFGSLICNGMKQTKKNWGISTLEAMAILEGINCVKQTCIDLQC-DLKVESDSKVVIETIN
        WK P SN+WKLN+DA+W  ++   G+GW++RD  G +I  G +  +    I+ LE MAI EG+  ++Q      C  + +ESDS   I  ++
Subjt:  WKKPPSNAWKLNSDASWLENSGQGGLGWVVRDSFGSLICNGMKQTKKNWGISTLEAMAILEGINCVKQTCIDLQC-DLKVESDSKVVIETIN

A0A6J1DSV1 uncharacterized protein LOC1110236081.2e-0833.93Show/hide
Query:  WKKPPSNAWKLNSDASWLENSGQGGLGWVVRDSFGSLICNGMKQTKKNWGISTLEAMAILEGINCVKQT-CIDLQCD----LKVESDSKVVIETINDISE
        WK P SN+WKLN+DA+W  ++  GG+GW++RD  G +I    +  +    I+ LE MAI EG+  ++Q  C  +Q +    + +ESDS   I  ++   +
Subjt:  WKKPPSNAWKLNSDASWLENSGQGGLGWVVRDSFGSLICNGMKQTKKNWGISTLEAMAILEGINCVKQT-CIDLQCD----LKVESDSKVVIETINDISE

Query:  DLSKVSNIIDMI
        D +++  +++ I
Subjt:  DLSKVSNIIDMI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein5.1e-0433.33Show/hide
Query:  WKKPPSNAWKLNSDASWLENSGQGGLGWVVRDSFGSLICNGMKQTKKNWGISTLEAMAILEGINCVKQTCIDLQCDLKV-ESDSKVVIETIND
        W+ PP    K N+DA+W  ++ + G+GWV+R+  G +   G +   K    S LEA   LE +     +    Q +  + ESDS+V+IE +N+
Subjt:  WKKPPSNAWKLNSDASWLENSGQGGLGWVVRDSFGSLICNGMKQTKKNWGISTLEAMAILEGINCVKQTCIDLQCDLKV-ESDSKVVIETIND


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGATGGATCAGAGTTCAGAAGCCTCGAGAACATTTATGATGGAAGAAAAGACAGGAAAAGAAAATGATAAAATAAAGGGGAAAGGAAAAGCTGCAGCAGAGATCAT
CAAACAAGAAAAAGTGAATCAGCCTAGCAAGCCCATGAACAATATCAACCTCAAAATTTCAGAGCCCAAACCTGACAACACCCCATCGTTGGCCCAACCTAGGGATTTGG
GAAAAGGAAAAGAGTTGGGGAAAGATCAGACAAGGAAAACAGGGACAATAAGAAAGTTCGCAACAACGACTTCGAGAAAACTGTTGCTCAAAGACAATGAGGAAGTGGCC
AAAGGAAAGCTTACCTACGTCAAGTCAAGGAGCCTAGCGAGTCACGATCTGTGGAAGAAACCCCCCTCGAATGCGTGGAAATTGAACTCGGATGCTTCTTGGCTCGAAAA
TTCTGGGCAAGGAGGCCTGGGATGGGTGGTTCGTGACTCTTTCGGATCCTTGATCTGCAATGGCATGAAACAAACGAAGAAAAATTGGGGCATTAGTACTCTGGAAGCCA
TGGCAATTCTGGAAGGGATCAATTGTGTAAAGCAAACTTGCATTGATCTGCAATGCGATTTAAAGGTGGAATCAGACTCCAAGGTCGTTATCGAGACAATCAACGACATC
TCTGAAGACCTTTCAAAGGTCAGCAACATCATCGACATGATCAATTCTGCTACTTCAGACGCTTCCCCTTCGAGGGAGTTTGGCTGTATATTTTGGGCGCCTGTTTTGCC
GCGTTGGATTTTGCCCCTCATTGATGAGGGTAGTTATGGTTCTGGTGTTAATAACCTTGTACTGATAACCACAACTCCCTTACAAGTAGTATCAGAACCATGTCCCGGGC
GTAGCTATGTCGGGTGGAATCCTTGGGTGCCAAACAAAGAAGTTGTGAGCCTAAGTAGTCATGGGGGAATTCGTGGTTGGACTCTATTGGACAGGCAGTATACTTCGGTG
AAGAGGAATTGTCTTGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGATGGATCAGAGTTCAGAAGCCTCGAGAACATTTATGATGGAAGAAAAGACAGGAAAAGAAAATGATAAAATAAAGGGGAAAGGAAAAGCTGCAGCAGAGATCAT
CAAACAAGAAAAAGTGAATCAGCCTAGCAAGCCCATGAACAATATCAACCTCAAAATTTCAGAGCCCAAACCTGACAACACCCCATCGTTGGCCCAACCTAGGGATTTGG
GAAAAGGAAAAGAGTTGGGGAAAGATCAGACAAGGAAAACAGGGACAATAAGAAAGTTCGCAACAACGACTTCGAGAAAACTGTTGCTCAAAGACAATGAGGAAGTGGCC
AAAGGAAAGCTTACCTACGTCAAGTCAAGGAGCCTAGCGAGTCACGATCTGTGGAAGAAACCCCCCTCGAATGCGTGGAAATTGAACTCGGATGCTTCTTGGCTCGAAAA
TTCTGGGCAAGGAGGCCTGGGATGGGTGGTTCGTGACTCTTTCGGATCCTTGATCTGCAATGGCATGAAACAAACGAAGAAAAATTGGGGCATTAGTACTCTGGAAGCCA
TGGCAATTCTGGAAGGGATCAATTGTGTAAAGCAAACTTGCATTGATCTGCAATGCGATTTAAAGGTGGAATCAGACTCCAAGGTCGTTATCGAGACAATCAACGACATC
TCTGAAGACCTTTCAAAGGTCAGCAACATCATCGACATGATCAATTCTGCTACTTCAGACGCTTCCCCTTCGAGGGAGTTTGGCTGTATATTTTGGGCGCCTGTTTTGCC
GCGTTGGATTTTGCCCCTCATTGATGAGGGTAGTTATGGTTCTGGTGTTAATAACCTTGTACTGATAACCACAACTCCCTTACAAGTAGTATCAGAACCATGTCCCGGGC
GTAGCTATGTCGGGTGGAATCCTTGGGTGCCAAACAAAGAAGTTGTGAGCCTAAGTAGTCATGGGGGAATTCGTGGTTGGACTCTATTGGACAGGCAGTATACTTCGGTG
AAGAGGAATTGTCTTGGATAA
Protein sequenceShow/hide protein sequence
MVMDQSSEASRTFMMEEKTGKENDKIKGKGKAAAEIIKQEKVNQPSKPMNNINLKISEPKPDNTPSLAQPRDLGKGKELGKDQTRKTGTIRKFATTTSRKLLLKDNEEVA
KGKLTYVKSRSLASHDLWKKPPSNAWKLNSDASWLENSGQGGLGWVVRDSFGSLICNGMKQTKKNWGISTLEAMAILEGINCVKQTCIDLQCDLKVESDSKVVIETINDI
SEDLSKVSNIIDMINSATSDASPSREFGCIFWAPVLPRWILPLIDEGSYGSGVNNLVLITTTPLQVVSEPCPGRSYVGWNPWVPNKEVVSLSSHGGIRGWTLLDRQYTSV
KRNCLG