; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0005293 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005293
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNA-binding protein 48
Genome locationchr6:13649777..13657432
RNA-Seq ExpressionLag0005293
SyntenyLag0005293
Gene Ontology termsGO:0005654 - nucleoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR034264 - RBM48, RNA recognition motif
IPR035979 - RNA-binding domain superfamily
IPR039599 - RNA-binding protein 48


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598220.1 RNA-binding protein 48, partial [Cucurbita argyrosperma subsp. sororia]6.1e-10789.47Show/hide
Query:  MPRYTDEPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQVSYAP
        MPRYT+EPPAVRVYTICDESRYLIVRNVPALGC D+LLKLFSSYGN+EECKPMDAEECDEFTDVYFVKFHLV NA  RFAKRKLDEFVFLGNRLQVSYAP
Subjt:  MPRYTDEPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQVSYAP

Query:  EFESLLDTKEKLEVRRREVLARTDSGRSRGFAVSSTTTKFTNPSHSHSTLEQKNSSEKRNYGDAVLISNPHVSQIIRVSSDQDYFASESMNQTVRLVREK
        +FESLLDTKEKLEVRRREVLAR DSGR RG AV+S TTKFTNPSHSH TLEQKNS EKRNYGDA L SNPHVSQI RVSSDQDYFASESMNQTV LVREK
Subjt:  EFESLLDTKEKLEVRRREVLARTDSGRSRGFAVSSTTTKFTNPSHSHSTLEQKNSSEKRNYGDAVLISNPHVSQIIRVSSDQDYFASESMNQTVRLVREK

Query:  LDKIQSTSEHLQAGPVNKKSRVDNRRRI
        LDKIQS SE L+AGPV+K+SRVDNRRRI
Subjt:  LDKIQSTSEHLQAGPVNKKSRVDNRRRI

XP_022152542.1 RNA-binding protein 48-like [Momordica charantia]4.0e-10688.16Show/hide
Query:  MPRYTDEPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQVSYAP
        MPRYTDE PAVRVYTICDESR+LIVRNVPALGC DDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLV NA  RFAKRKLDEFVFLGNRLQVSYAP
Subjt:  MPRYTDEPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQVSYAP

Query:  EFESLLDTKEKLEVRRREVLARTDSGRSRGFAVSSTTTKFTNPSHSHSTLEQKNSSEKRNYGDAVLISNPHVSQIIRVSSDQDYFASESMNQTVRLVREK
        EFESLLDTKEKLEVRRREVLAR DSGRS+G AV STTTK TNP+HSH TLEQKNS EKRNYGDA LI+NPHVSQ+ +VSSDQD+FASESMN+TV LVREK
Subjt:  EFESLLDTKEKLEVRRREVLARTDSGRSRGFAVSSTTTKFTNPSHSHSTLEQKNSSEKRNYGDAVLISNPHVSQIIRVSSDQDYFASESMNQTVRLVREK

Query:  LDKIQSTSEHLQAGPVNKKSRVDNRRRI
        LDKIQS+SEHL+ GP++KKSRVDNRRRI
Subjt:  LDKIQSTSEHLQAGPVNKKSRVDNRRRI

XP_022961642.1 RNA-binding protein 48 isoform X1 [Cucurbita moschata]8.0e-10789.04Show/hide
Query:  MPRYTDEPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQVSYAP
        MPRYT+EPPAVRVYTICDESRYLIVRNVPALGC D+LLKLFSSYGN+EECKPMDAEECDEFTDVYFVKFHLV NA  RFAKRKLDEFVFLGNRLQVSYAP
Subjt:  MPRYTDEPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQVSYAP

Query:  EFESLLDTKEKLEVRRREVLARTDSGRSRGFAVSSTTTKFTNPSHSHSTLEQKNSSEKRNYGDAVLISNPHVSQIIRVSSDQDYFASESMNQTVRLVREK
        +FESLLDTKEKLEVRRREVLAR +SGR RG AV+S TTKFTNPSHSH TLEQK+S EKRNYGDA L SNPHVSQI RVSSDQDYFASESMNQTV LVREK
Subjt:  EFESLLDTKEKLEVRRREVLARTDSGRSRGFAVSSTTTKFTNPSHSHSTLEQKNSSEKRNYGDAVLISNPHVSQIIRVSSDQDYFASESMNQTVRLVREK

Query:  LDKIQSTSEHLQAGPVNKKSRVDNRRRI
        LDKIQS SEHL+AGPV+K+SRVDNRRRI
Subjt:  LDKIQSTSEHLQAGPVNKKSRVDNRRRI

XP_022997621.1 RNA-binding protein 48 isoform X1 [Cucurbita maxima]5.5e-10889.91Show/hide
Query:  MPRYTDEPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQVSYAP
        MPRYT+EPPAVRVYTICDESRYLIVRNVPALGC D+LLKLFSSYGN+EECKPMDAEECDEFTDVYFVKFHLV NA  RFAKRKLDEFVFLGNRLQVSYAP
Subjt:  MPRYTDEPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQVSYAP

Query:  EFESLLDTKEKLEVRRREVLARTDSGRSRGFAVSSTTTKFTNPSHSHSTLEQKNSSEKRNYGDAVLISNPHVSQIIRVSSDQDYFASESMNQTVRLVREK
        +FESLLDTKEKLEVRRREVLAR DSGR RG AV+S TTKFTNPSHSH TLEQKNS EKRNYGDA L SNPHVSQI RVSSDQDYFASESMNQTV LVREK
Subjt:  EFESLLDTKEKLEVRRREVLARTDSGRSRGFAVSSTTTKFTNPSHSHSTLEQKNSSEKRNYGDAVLISNPHVSQIIRVSSDQDYFASESMNQTVRLVREK

Query:  LDKIQSTSEHLQAGPVNKKSRVDNRRRI
        LDKIQS SEHL+AGPV+K+SRVDNRRRI
Subjt:  LDKIQSTSEHLQAGPVNKKSRVDNRRRI

XP_023545649.1 RNA-binding protein 48 [Cucurbita pepo subsp. pepo]1.0e-10689.04Show/hide
Query:  MPRYTDEPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQVSYAP
        MPRYT+EPPAVRVYTICDESRYLIVRNVPALGC D+LLKLFSSYGN+EECKPMDAEECDEFTDVYFVKFHLV NA  RFAKRKLDEFVFLGNRLQVSYAP
Subjt:  MPRYTDEPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQVSYAP

Query:  EFESLLDTKEKLEVRRREVLARTDSGRSRGFAVSSTTTKFTNPSHSHSTLEQKNSSEKRNYGDAVLISNPHVSQIIRVSSDQDYFASESMNQTVRLVREK
        +FESLLDTKEKLEVRRREVLAR DSGR RG AV+S TTKFTNPSHSH TLEQKNS EKRNY DA L SNPHVSQI RVSSDQDYFASESMNQTV LVREK
Subjt:  EFESLLDTKEKLEVRRREVLARTDSGRSRGFAVSSTTTKFTNPSHSHSTLEQKNSSEKRNYGDAVLISNPHVSQIIRVSSDQDYFASESMNQTVRLVREK

Query:  LDKIQSTSEHLQAGPVNKKSRVDNRRRI
        LDKIQS  EHL+AGPV+K+SRVDNRRRI
Subjt:  LDKIQSTSEHLQAGPVNKKSRVDNRRRI

TrEMBL top hitse value%identityAlignment
A0A0A0LQL2 RNA-binding protein 482.4e-10486.32Show/hide
Query:  KTTCTGMPRYTDEPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRL
        KT C GMP + DE  AVR YT+CDESRYLIVRNVPALGC DDL KLFSSYGN+EECKPMDAEECDEFTDVYFVKFHLV NA  RFAKRKLDEFVFLGNRL
Subjt:  KTTCTGMPRYTDEPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRL

Query:  QVSYAPEFESLLDTKEKLEVRRREVLARTDSGRSRGFAVSSTTTKFTNPSHSHSTLEQKNSSEKRNYGDAVLISNPHVSQIIRVSSDQDYFASESMNQTV
        QVSYAPEFESLLDTKEKLEVRRREVLAR DSGR RG AVSSTT K TN S SH TL+QKNS EKRNYGDA LISNPHVSQI RVSSDQDYFASESMNQTV
Subjt:  QVSYAPEFESLLDTKEKLEVRRREVLARTDSGRSRGFAVSSTTTKFTNPSHSHSTLEQKNSSEKRNYGDAVLISNPHVSQIIRVSSDQDYFASESMNQTV

Query:  RLVREKLDKIQSTSEHLQAGPVNKKSRVDNRRRI
         LVREKLDKIQS+SEHLQAGP +KKSR+DNRRRI
Subjt:  RLVREKLDKIQSTSEHLQAGPVNKKSRVDNRRRI

A0A6J1BRX6 RNA-binding protein 482.6e-10386.4Show/hide
Query:  MPRYTDEPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQVSYAP
        MPRYT+EPPAVRVY ICDESRYLIVRNVPALGC DDLLKLFSSYGNVEECKPMDAEECDEFTDVYF+KFHLV NA  RFAKRKLDEFVFLGNRLQVSYAP
Subjt:  MPRYTDEPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQVSYAP

Query:  EFESLLDTKEKLEVRRREVLARTDSGRSRGFAVSSTTTKFTNPSHSHSTLEQKNSSEKRNYGDAVLISNPHVSQIIRVSSDQDYFASESMNQTVRLVREK
        EFESLLDTKEKLEVRRREVLAR + GRS+G +V ST T  +NPSHSH  LEQK S EKRNYGDA LISNP VSQ+ +VSSDQDYFASESMNQTV LVREK
Subjt:  EFESLLDTKEKLEVRRREVLARTDSGRSRGFAVSSTTTKFTNPSHSHSTLEQKNSSEKRNYGDAVLISNPHVSQIIRVSSDQDYFASESMNQTVRLVREK

Query:  LDKIQSTSEHLQAGPVNKKSRVDNRRRI
        LD+IQS+SEHLQAGPV+KKSRVDNRRRI
Subjt:  LDKIQSTSEHLQAGPVNKKSRVDNRRRI

A0A6J1DGJ2 RNA-binding protein 481.9e-10688.16Show/hide
Query:  MPRYTDEPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQVSYAP
        MPRYTDE PAVRVYTICDESR+LIVRNVPALGC DDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLV NA  RFAKRKLDEFVFLGNRLQVSYAP
Subjt:  MPRYTDEPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQVSYAP

Query:  EFESLLDTKEKLEVRRREVLARTDSGRSRGFAVSSTTTKFTNPSHSHSTLEQKNSSEKRNYGDAVLISNPHVSQIIRVSSDQDYFASESMNQTVRLVREK
        EFESLLDTKEKLEVRRREVLAR DSGRS+G AV STTTK TNP+HSH TLEQKNS EKRNYGDA LI+NPHVSQ+ +VSSDQD+FASESMN+TV LVREK
Subjt:  EFESLLDTKEKLEVRRREVLARTDSGRSRGFAVSSTTTKFTNPSHSHSTLEQKNSSEKRNYGDAVLISNPHVSQIIRVSSDQDYFASESMNQTVRLVREK

Query:  LDKIQSTSEHLQAGPVNKKSRVDNRRRI
        LDKIQS+SEHL+ GP++KKSRVDNRRRI
Subjt:  LDKIQSTSEHLQAGPVNKKSRVDNRRRI

A0A6J1HAQ6 RNA-binding protein 483.9e-10789.04Show/hide
Query:  MPRYTDEPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQVSYAP
        MPRYT+EPPAVRVYTICDESRYLIVRNVPALGC D+LLKLFSSYGN+EECKPMDAEECDEFTDVYFVKFHLV NA  RFAKRKLDEFVFLGNRLQVSYAP
Subjt:  MPRYTDEPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQVSYAP

Query:  EFESLLDTKEKLEVRRREVLARTDSGRSRGFAVSSTTTKFTNPSHSHSTLEQKNSSEKRNYGDAVLISNPHVSQIIRVSSDQDYFASESMNQTVRLVREK
        +FESLLDTKEKLEVRRREVLAR +SGR RG AV+S TTKFTNPSHSH TLEQK+S EKRNYGDA L SNPHVSQI RVSSDQDYFASESMNQTV LVREK
Subjt:  EFESLLDTKEKLEVRRREVLARTDSGRSRGFAVSSTTTKFTNPSHSHSTLEQKNSSEKRNYGDAVLISNPHVSQIIRVSSDQDYFASESMNQTVRLVREK

Query:  LDKIQSTSEHLQAGPVNKKSRVDNRRRI
        LDKIQS SEHL+AGPV+K+SRVDNRRRI
Subjt:  LDKIQSTSEHLQAGPVNKKSRVDNRRRI

A0A6J1K7Z4 RNA-binding protein 482.7e-10889.91Show/hide
Query:  MPRYTDEPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQVSYAP
        MPRYT+EPPAVRVYTICDESRYLIVRNVPALGC D+LLKLFSSYGN+EECKPMDAEECDEFTDVYFVKFHLV NA  RFAKRKLDEFVFLGNRLQVSYAP
Subjt:  MPRYTDEPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQVSYAP

Query:  EFESLLDTKEKLEVRRREVLARTDSGRSRGFAVSSTTTKFTNPSHSHSTLEQKNSSEKRNYGDAVLISNPHVSQIIRVSSDQDYFASESMNQTVRLVREK
        +FESLLDTKEKLEVRRREVLAR DSGR RG AV+S TTKFTNPSHSH TLEQKNS EKRNYGDA L SNPHVSQI RVSSDQDYFASESMNQTV LVREK
Subjt:  EFESLLDTKEKLEVRRREVLARTDSGRSRGFAVSSTTTKFTNPSHSHSTLEQKNSSEKRNYGDAVLISNPHVSQIIRVSSDQDYFASESMNQTVRLVREK

Query:  LDKIQSTSEHLQAGPVNKKSRVDNRRRI
        LDKIQS SEHL+AGPV+K+SRVDNRRRI
Subjt:  LDKIQSTSEHLQAGPVNKKSRVDNRRRI

SwissProt top hitse value%identityAlignment
A4FVJ7 RNA-binding protein 482.2e-2240.52Show/hide
Query:  AVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQVSYAPEFESLLDTK
        AV+VYTI  ESRYL+V+ VPA+G   +L++LF+ YG +EE +P+D    ++FT+VY ++F  + +A  R AKR  DE  F G +L V YAPE+E++ +TK
Subjt:  AVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQVSYAPEFESLLDTK

Query:  EKLEVRRREVLARTDSG---RSRGFAVSSTTTKFTNPSHSHSTLEQKNSSEKR
        +KL+ RRR V   + +     S+   V++ ++  T+   + + + QKN  E R
Subjt:  EKLEVRRREVLARTDSG---RSRGFAVSSTTTKFTNPSHSHSTLEQKNSSEKR

A6QPE1 RNA-binding protein 482.7e-2040.46Show/hide
Query:  KTTCTGMPRYTD--EPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGN
        +  C    +Y +   P AV+VYTI  ES YL+++ VPA+G   +L++ F+ YG +E+   +D    ++FT+VY +KF  + +A  R AKRK+DE  F G 
Subjt:  KTTCTGMPRYTD--EPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGN

Query:  RLQVSYAPEFESLLDTKEKLEVRRREVLART
         L V YAPEFE++ +T++KL  R   V   T
Subjt:  RLQVSYAPEFESLLDTKEKLEVRRREVLART

Q561R3 RNA-binding protein 481.2e-2042.15Show/hide
Query:  CTGMPRYTD--EPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQ
        C    +Y +   P AV+VYTI  ES+YL+++ VPA+G   +L++ F+ YG +E+   +D    ++FT+VY +KF  + +A  R AK+K+DE  F G  L 
Subjt:  CTGMPRYTD--EPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQ

Query:  VSYAPEFESLLDTKEKLEVRR
        V YAPEFE++ +T++KLE R+
Subjt:  VSYAPEFESLLDTKEKLEVRR

Q5R4U2 RNA-binding protein 484.8e-2240.6Show/hide
Query:  KTTCTGMPRYTD--EPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGN
        +  C    +Y +   P AV+VYTI  ES+YL+++ VPA+G   +L++ F+ YG +E+   +D    ++FT+VY +KF  + +A  R AKRK+DE  F G 
Subjt:  KTTCTGMPRYTD--EPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGN

Query:  RLQVSYAPEFESLLDTKEKLEVRRREVLARTDS
         L V YAPEFE++ +T++KL+VR+  V+  T++
Subjt:  RLQVSYAPEFESLLDTKEKLEVRRREVLARTDS

Q5RL73 RNA-binding protein 481.8e-2139.85Show/hide
Query:  KTTCTGMPRYTD--EPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGN
        +  C    +Y +   P AV+VYTI  ES+YL+++ VPA+G   +L++ F+ YG +E+   +D    ++FT+VY +KF  + +A  R AKRK+DE  F G 
Subjt:  KTTCTGMPRYTD--EPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGN

Query:  RLQVSYAPEFESLLDTKEKLEVRRREVLARTDS
         L V YAPEFE++ +T++KL++R+  V+  T++
Subjt:  RLQVSYAPEFESLLDTKEKLEVRRREVLARTDS

Arabidopsis top hitse value%identityAlignment
AT2G27790.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.4e-6153.39Show/hide
Query:  MPRYTDEPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQVSYAP
        M RY DE PAVRVYT+CDESRY+IVRNVPALGC DDL++LF +YG VEECKPMDAE+C EFTDVY++KF L+ NA  RFAKRKLDE  FLGNRLQ+SYAP
Subjt:  MPRYTDEPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQVSYAP

Query:  EFESLLDTKEKLEVRRREVLARTDSGRSRGFAVSSTTTKFTNPSHSHSTLEQKNSSEKRNYGDAVLISNPHVSQIIRVSSDQDYFASESMNQTVRLVREK
        E+E++ DTK+KLE RR+EVLAR +  + +    +S  TK   P+    T     SS++R         N   + + RVSSDQ+YFAS SMNQTV+ VREK
Subjt:  EFESLLDTKEKLEVRRREVLARTDSGRSRGFAVSSTTTKFTNPSHSHSTLEQKNSSEKRNYGDAVLISNPHVSQIIRVSSDQDYFASESMNQTVRLVREK

Query:  LDKIQSTSEHLQAGPVN-----------------------KKSRVDNRRRI
        L+KI+ +    +  P +                       K++RVDNRRRI
Subjt:  LDKIQSTSEHLQAGPVN-----------------------KKSRVDNRRRI

AT2G27790.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.4e-6153.39Show/hide
Query:  MPRYTDEPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQVSYAP
        M RY DE PAVRVYT+CDESRY+IVRNVPALGC DDL++LF +YG VEECKPMDAE+C EFTDVY++KF L+ NA  RFAKRKLDE  FLGNRLQ+SYAP
Subjt:  MPRYTDEPPAVRVYTICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQVSYAP

Query:  EFESLLDTKEKLEVRRREVLARTDSGRSRGFAVSSTTTKFTNPSHSHSTLEQKNSSEKRNYGDAVLISNPHVSQIIRVSSDQDYFASESMNQTVRLVREK
        E+E++ DTK+KLE RR+EVLAR +  + +    +S  TK   P+    T     SS++R         N   + + RVSSDQ+YFAS SMNQTV+ VREK
Subjt:  EFESLLDTKEKLEVRRREVLARTDSGRSRGFAVSSTTTKFTNPSHSHSTLEQKNSSEKRNYGDAVLISNPHVSQIIRVSSDQDYFASESMNQTVRLVREK

Query:  LDKIQSTSEHLQAGPVN-----------------------KKSRVDNRRRI
        L+KI+ +    +  P +                       K++RVDNRRRI
Subjt:  LDKIQSTSEHLQAGPVN-----------------------KKSRVDNRRRI

AT5G27300.1 pentatricopeptide (PPR) repeat-containing protein5.4e-5353.64Show/hide
Query:  TICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEV
        ++CDESRY+IVRNVPALGC DDL++LF +YG VEECKPMDAE+C EFTDVY++KF L+ NA      RKLDE  FLGNRLQ+SYAPE+ES+ DTKEKLE 
Subjt:  TICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEV

Query:  RRREVLARTDSGRSRGFAVSSTTTKFTNPSHSHSTLEQKNSSEKRNYGDAVLISNPHVSQIIRVSSDQDYFASESMNQTVRLVREKLDKIQSTSEH----
        RR+EVLAR +  +++    +S  TK   P    +  +  N S +R   D     +   + + RVSS Q+YFAS SMNQ V+ VREKL+KI+ +       
Subjt:  RRREVLARTDSGRSRGFAVSSTTTKFTNPSHSHSTLEQKNSSEKRNYGDAVLISNPHVSQIIRVSSDQDYFASESMNQTVRLVREKLDKIQSTSEH----

Query:  --LQAGPVNKKSRVDNRRRI
           Q  P  K++RVDNRRRI
Subjt:  --LQAGPVNKKSRVDNRRRI

AT5G27300.2 pentatricopeptide (PPR) repeat-containing protein5.4e-5353.64Show/hide
Query:  TICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEV
        ++CDESRY+IVRNVPALGC DDL++LF +YG VEECKPMDAE+C EFTDVY++KF L+ NA      RKLDE  FLGNRLQ+SYAPE+ES+ DTKEKLE 
Subjt:  TICDESRYLIVRNVPALGCRDDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEV

Query:  RRREVLARTDSGRSRGFAVSSTTTKFTNPSHSHSTLEQKNSSEKRNYGDAVLISNPHVSQIIRVSSDQDYFASESMNQTVRLVREKLDKIQSTSEH----
        RR+EVLAR +  +++    +S  TK   P    +  +  N S +R   D     +   + + RVSS Q+YFAS SMNQ V+ VREKL+KI+ +       
Subjt:  RRREVLARTDSGRSRGFAVSSTTTKFTNPSHSHSTLEQKNSSEKRNYGDAVLISNPHVSQIIRVSSDQDYFASESMNQTVRLVREKLDKIQSTSEH----

Query:  --LQAGPVNKKSRVDNRRRI
           Q  P  K++RVDNRRRI
Subjt:  --LQAGPVNKKSRVDNRRRI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAAGTTAGAAAGTGGAAGGAGAAGAGCTAGAGAGTATGAGGAGAGAGTAGAGAGTTTGGTTCCCCTTCTTCAGTGGCAAAGAGGGGTATACCTGCTCATG
CTCCTAGGGTTTTTAGGAATTCGGAGGCGTTTCGGGACGGACCAGGTGGAACTGGGGCTACTAAAGGTTGCAGGGACCGAACCGAGTCGAAGGGACTCAGCCCAC
GCGAGCGGGCCGAGGGTCGGGCTTTGGTCTTGGGTCGTTCCACTTGTCGGTTTCGCCTCTAGGGTCCATCTCCCAGTCCTATTTTTGCCCGATCTTTCTCCCCCA
TCGTTTACCACGACATCGCCACCGAAGCCGCCAATCTCACCAGCAGTCGCCGTCGTCACTGTACATGCTGCGATTCGCCTCGCTGTCGTCAGTGGTCTCGGTGCA
GTCGACGGCCGTGTGGTCCTGTTTGAGGCATCGTTGCAGAGACTGATTCCTCGCCGGAGTGTTGCCGTGGGTGTCAATTCAGGAGGCGCGAAGACGACTTGTACA
GGGATGCCTCGCTATACAGATGAGCCCCCTGCAGTTCGCGTCTATACGATTTGCGATGAGTCTAGGTATTTGATTGTGAGGAACGTCCCGGCATTGGGTTGCAGA
GATGACTTGCTCAAATTGTTCTCCTCCTACGGAAACGTTGAAGAGTGTAAACCGATGGATGCAGAAGAATGTGATGAATTCACAGACGTTTATTTTGTCAAATTT
CATTTGGTCGGCAATGCCAATTTTAGGTTTGCGAAAAGAAAATTGGACGAGTTTGTTTTCCTTGGCAATCGGCTGCAAGTCTCTTATGCTCCTGAGTTTGAAAGC
TTGCTTGATACAAAGGAAAAGCTAGAAGTTAGGAGGCGAGAAGTTTTAGCACGAACAGATTCTGGAAGATCAAGAGGATTTGCAGTTAGTTCAACCACCACAAAG
TTTACAAATCCTTCTCATTCTCACTCTACCCTTGAACAGAAGAACTCTAGTGAAAAGAGGAATTATGGAGATGCAGTGCTCATTTCCAACCCACATGTTTCTCAA
ATAATAAGAGTTTCCTCCGACCAGGATTACTTCGCATCTGAATCTATGAATCAAACTGTGCGTCTCGTCAGGGAAAAGCTTGATAAGATTCAATCAACCAGCGAA
CATCTGCAAGCTGGACCTGTGAACAAGAAATCACGTGTGGACAATAGGAGAAGAATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTAAGTTAGAAAGTGGAAGGAGAAGAGCTAGAGAGTATGAGGAGAGAGTAGAGAGTTTGGTTCCCCTTCTTCAGTGGCAAAGAGGGGTATACCTGCTCATG
CTCCTAGGGTTTTTAGGAATTCGGAGGCGTTTCGGGACGGACCAGGTGGAACTGGGGCTACTAAAGGTTGCAGGGACCGAACCGAGTCGAAGGGACTCAGCCCAC
GCGAGCGGGCCGAGGGTCGGGCTTTGGTCTTGGGTCGTTCCACTTGTCGGTTTCGCCTCTAGGGTCCATCTCCCAGTCCTATTTTTGCCCGATCTTTCTCCCCCA
TCGTTTACCACGACATCGCCACCGAAGCCGCCAATCTCACCAGCAGTCGCCGTCGTCACTGTACATGCTGCGATTCGCCTCGCTGTCGTCAGTGGTCTCGGTGCA
GTCGACGGCCGTGTGGTCCTGTTTGAGGCATCGTTGCAGAGACTGATTCCTCGCCGGAGTGTTGCCGTGGGTGTCAATTCAGGAGGCGCGAAGACGACTTGTACA
GGGATGCCTCGCTATACAGATGAGCCCCCTGCAGTTCGCGTCTATACGATTTGCGATGAGTCTAGGTATTTGATTGTGAGGAACGTCCCGGCATTGGGTTGCAGA
GATGACTTGCTCAAATTGTTCTCCTCCTACGGAAACGTTGAAGAGTGTAAACCGATGGATGCAGAAGAATGTGATGAATTCACAGACGTTTATTTTGTCAAATTT
CATTTGGTCGGCAATGCCAATTTTAGGTTTGCGAAAAGAAAATTGGACGAGTTTGTTTTCCTTGGCAATCGGCTGCAAGTCTCTTATGCTCCTGAGTTTGAAAGC
TTGCTTGATACAAAGGAAAAGCTAGAAGTTAGGAGGCGAGAAGTTTTAGCACGAACAGATTCTGGAAGATCAAGAGGATTTGCAGTTAGTTCAACCACCACAAAG
TTTACAAATCCTTCTCATTCTCACTCTACCCTTGAACAGAAGAACTCTAGTGAAAAGAGGAATTATGGAGATGCAGTGCTCATTTCCAACCCACATGTTTCTCAA
ATAATAAGAGTTTCCTCCGACCAGGATTACTTCGCATCTGAATCTATGAATCAAACTGTGCGTCTCGTCAGGGAAAAGCTTGATAAGATTCAATCAACCAGCGAA
CATCTGCAAGCTGGACCTGTGAACAAGAAATCACGTGTGGACAATAGGAGAAGAATCTAA
Protein sequenceShow/hide protein sequence
MLKLESGRRRAREYEERVESLVPLLQWQRGVYLLMLLGFLGIRRRFGTDQVELGLLKVAGTEPSRRDSAHASGPRVGLWSWVVPLVGFASRVHLPVLFLPDLSPP
SFTTTSPPKPPISPAVAVVTVHAAIRLAVVSGLGAVDGRVVLFEASLQRLIPRRSVAVGVNSGGAKTTCTGMPRYTDEPPAVRVYTICDESRYLIVRNVPALGCR
DDLLKLFSSYGNVEECKPMDAEECDEFTDVYFVKFHLVGNANFRFAKRKLDEFVFLGNRLQVSYAPEFESLLDTKEKLEVRRREVLARTDSGRSRGFAVSSTTTK
FTNPSHSHSTLEQKNSSEKRNYGDAVLISNPHVSQIIRVSSDQDYFASESMNQTVRLVREKLDKIQSTSEHLQAGPVNKKSRVDNRRRI