; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0005309 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005309
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptiontype 2 DNA topoisomerase 6 subunit B-like isoform X1
Genome locationchr6:14066181..14066707
RNA-Seq ExpressionLag0005309
SyntenyLag0005309
Gene Ontology termsGO:0042138 - meiotic DNA double-strand break formation (biological process)
GO:0016853 - isomerase activity (molecular function)
InterPro domainsIPR034566 - Type 2 DNA topoisomerase 6 subunit B-like, plants


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022996885.1 type 2 DNA topoisomerase 6 subunit B-like isoform X1 [Cucurbita maxima]2.6e-3092.11Show/hide
Query:  MEFASLQDLCLHLISSAIRRCICSERLCRLSVLLQRSPASAPPLVCISVSDTGLGSCLEEFQDLKCPVEGILAETW
        MEFASLQDLCL LISSAIRRCICSERLCRLSVLLQRSPAS PPLV IS+SDTGLGSC+EEFQ+LKCPVEGILAETW
Subjt:  MEFASLQDLCLHLISSAIRRCICSERLCRLSVLLQRSPASAPPLVCISVSDTGLGSCLEEFQDLKCPVEGILAETW
XP_022996889.1 type 2 DNA topoisomerase 6 subunit B-like isoform X4 [Cucurbita maxima]2.6e-3092.11Show/hide
Query:  MEFASLQDLCLHLISSAIRRCICSERLCRLSVLLQRSPASAPPLVCISVSDTGLGSCLEEFQDLKCPVEGILAETW
        MEFASLQDLCL LISSAIRRCICSERLCRLSVLLQRSPAS PPLV IS+SDTGLGSC+EEFQ+LKCPVEGILAETW
Subjt:  MEFASLQDLCLHLISSAIRRCICSERLCRLSVLLQRSPASAPPLVCISVSDTGLGSCLEEFQDLKCPVEGILAETW
XP_038885430.1 type 2 DNA topoisomerase 6 subunit B-like isoform X1 [Benincasa hispida]1.8e-3192.11Show/hide
Query:  MEFASLQDLCLHLISSAIRRCICSERLCRLSVLLQRSPASAPPLVCISVSDTGLGSCLEEFQDLKCPVEGILAETW
        MEFASLQ+L LHLISSAIRRCICSERLCRLSVLLQRSPAS PPLVCIS+SDTGLGSC++EFQDLKCPVEGILAETW
Subjt:  MEFASLQDLCLHLISSAIRRCICSERLCRLSVLLQRSPASAPPLVCISVSDTGLGSCLEEFQDLKCPVEGILAETW
XP_038885431.1 type 2 DNA topoisomerase 6 subunit B-like isoform X2 [Benincasa hispida]1.8e-3192.11Show/hide
Query:  MEFASLQDLCLHLISSAIRRCICSERLCRLSVLLQRSPASAPPLVCISVSDTGLGSCLEEFQDLKCPVEGILAETW
        MEFASLQ+L LHLISSAIRRCICSERLCRLSVLLQRSPAS PPLVCIS+SDTGLGSC++EFQDLKCPVEGILAETW
Subjt:  MEFASLQDLCLHLISSAIRRCICSERLCRLSVLLQRSPASAPPLVCISVSDTGLGSCLEEFQDLKCPVEGILAETW
XP_038885432.1 type 2 DNA topoisomerase 6 subunit B-like isoform X3 [Benincasa hispida]1.8e-3192.11Show/hide
Query:  MEFASLQDLCLHLISSAIRRCICSERLCRLSVLLQRSPASAPPLVCISVSDTGLGSCLEEFQDLKCPVEGILAETW
        MEFASLQ+L LHLISSAIRRCICSERLCRLSVLLQRSPAS PPLVCIS+SDTGLGSC++EFQDLKCPVEGILAETW
Subjt:  MEFASLQDLCLHLISSAIRRCICSERLCRLSVLLQRSPASAPPLVCISVSDTGLGSCLEEFQDLKCPVEGILAETW
TrEMBL top hitse value%identityAlignment
A0A1S4DVN5 type 2 DNA topoisomerase 6 subunit B-like isoform X44.8e-3090.79Show/hide
Query:  MEFASLQDLCLHLISSAIRRCICSERLCRLSVLLQRSPASAPPLVCISVSDTGLGSCLEEFQDLKCPVEGILAETW
        MEFASLQDL LHLISSAIRRCICSERLCRLSVLLQRSPAS PPLV IS+SDTG GSC++EFQDLKCPVEGILAETW
Subjt:  MEFASLQDLCLHLISSAIRRCICSERLCRLSVLLQRSPASAPPLVCISVSDTGLGSCLEEFQDLKCPVEGILAETW
A0A6J1K603 type 2 DNA topoisomerase 6 subunit B-like isoform X61.3e-3092.11Show/hide
Query:  MEFASLQDLCLHLISSAIRRCICSERLCRLSVLLQRSPASAPPLVCISVSDTGLGSCLEEFQDLKCPVEGILAETW
        MEFASLQDLCL LISSAIRRCICSERLCRLSVLLQRSPAS PPLV IS+SDTGLGSC+EEFQ+LKCPVEGILAETW
Subjt:  MEFASLQDLCLHLISSAIRRCICSERLCRLSVLLQRSPASAPPLVCISVSDTGLGSCLEEFQDLKCPVEGILAETW
A0A6J1K804 type 2 DNA topoisomerase 6 subunit B-like isoform X11.3e-3092.11Show/hide
Query:  MEFASLQDLCLHLISSAIRRCICSERLCRLSVLLQRSPASAPPLVCISVSDTGLGSCLEEFQDLKCPVEGILAETW
        MEFASLQDLCL LISSAIRRCICSERLCRLSVLLQRSPAS PPLV IS+SDTGLGSC+EEFQ+LKCPVEGILAETW
Subjt:  MEFASLQDLCLHLISSAIRRCICSERLCRLSVLLQRSPASAPPLVCISVSDTGLGSCLEEFQDLKCPVEGILAETW
A0A6J1K810 type 2 DNA topoisomerase 6 subunit B-like isoform X51.3e-3092.11Show/hide
Query:  MEFASLQDLCLHLISSAIRRCICSERLCRLSVLLQRSPASAPPLVCISVSDTGLGSCLEEFQDLKCPVEGILAETW
        MEFASLQDLCL LISSAIRRCICSERLCRLSVLLQRSPAS PPLV IS+SDTGLGSC+EEFQ+LKCPVEGILAETW
Subjt:  MEFASLQDLCLHLISSAIRRCICSERLCRLSVLLQRSPASAPPLVCISVSDTGLGSCLEEFQDLKCPVEGILAETW
A0A6J1K9Y1 type 2 DNA topoisomerase 6 subunit B-like isoform X41.3e-3092.11Show/hide
Query:  MEFASLQDLCLHLISSAIRRCICSERLCRLSVLLQRSPASAPPLVCISVSDTGLGSCLEEFQDLKCPVEGILAETW
        MEFASLQDLCL LISSAIRRCICSERLCRLSVLLQRSPAS PPLV IS+SDTGLGSC+EEFQ+LKCPVEGILAETW
Subjt:  MEFASLQDLCLHLISSAIRRCICSERLCRLSVLLQRSPASAPPLVCISVSDTGLGSCLEEFQDLKCPVEGILAETW
SwissProt top hitse value%identityAlignment
Q5Q0E6 Type 2 DNA topoisomerase 6 subunit B-like3.6e-1454.79Show/hide
Query:  ASLQDLCLHLISSAIRRCICSERLCRLSVLLQRSPASAPPLVCISVSDTGLGSCLEEFQDLKCPVEGILAETW
        A +  L L LISSA +RC  +E LCRLSVLL +S    PP+ CIS++DTG+G  LEEFQ+L+CP E   A+ W
Subjt:  ASLQDLCLHLISSAIRRCICSERLCRLSVLLQRSPASAPPLVCISVSDTGLGSCLEEFQDLKCPVEGILAETW
Arabidopsis top hitse value%identityAlignment
AT1G60460.1 unknown protein2.5e-1554.79Show/hide
Query:  ASLQDLCLHLISSAIRRCICSERLCRLSVLLQRSPASAPPLVCISVSDTGLGSCLEEFQDLKCPVEGILAETW
        A +  L L LISSA +RC  +E LCRLSVLL +S    PP+ CIS++DTG+G  LEEFQ+L+CP E   A+ W
Subjt:  ASLQDLCLHLISSAIRRCICSERLCRLSVLLQRSPASAPPLVCISVSDTGLGSCLEEFQDLKCPVEGILAETW
AT1G60460.2 unknown protein7.6e-1254.39Show/hide
Query:  RCICSERLCRLSVLLQRSPASAPPLVCISVSDTGLGSCLEEFQDLKCPVEGILAETW
        +C  +E LCRLSVLL +S    PP+ CIS++DTG+G  LEEFQ+L+CP E   A+ W
Subjt:  RCICSERLCRLSVLLQRSPASAPPLVCISVSDTGLGSCLEEFQDLKCPVEGILAETW
AT1G60460.3 unknown protein2.5e-1554.79Show/hide
Query:  ASLQDLCLHLISSAIRRCICSERLCRLSVLLQRSPASAPPLVCISVSDTGLGSCLEEFQDLKCPVEGILAETW
        A +  L L LISSA +RC  +E LCRLSVLL +S    PP+ CIS++DTG+G  LEEFQ+L+CP E   A+ W
Subjt:  ASLQDLCLHLISSAIRRCICSERLCRLSVLLQRSPASAPPLVCISVSDTGLGSCLEEFQDLKCPVEGILAETW

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATTTGCTTCTCTTCAAGACCTCTGCTTACATCTAATTTCTTCGGCAATACGGCGATGCATCTGCTCCGAACGACTCTGCAGACTCTCAGTTCTTCTGCAACGCTC
TCCCGCTTCCGCTCCTCCACTAGTTTGTATTTCTGTTTCAGATACTGGCCTTGGAAGCTGCCTAGAGGAATTTCAGGATTTGAAGTGCCCCGTTGAAGGTATTCTTGCTG
AAACGTGGGGTGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAATTTGCTTCTCTTCAAGACCTCTGCTTACATCTAATTTCTTCGGCAATACGGCGATGCATCTGCTCCGAACGACTCTGCAGACTCTCAGTTCTTCTGCAACGCTC
TCCCGCTTCCGCTCCTCCACTAGTTTGTATTTCTGTTTCAGATACTGGCCTTGGAAGCTGCCTAGAGGAATTTCAGGATTTGAAGTGCCCCGTTGAAGGTATTCTTGCTG
AAACGTGGGGTGAGTAA
Protein sequenceShow/hide protein sequence
MEFASLQDLCLHLISSAIRRCICSERLCRLSVLLQRSPASAPPLVCISVSDTGLGSCLEEFQDLKCPVEGILAETWGE