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Lag0005333 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005333
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDNA-directed RNA polymerases II and IV subunit 5A-like
Genome locationchr6:14544421..14545430
RNA-Seq ExpressionLag0005333
SyntenyLag0005333
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsIPR005571 - RNA polymerase, Rpb5, N-terminal
IPR036710 - RNA polymerase Rpb5, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7014568.1 DNA-directed RNA polymerases II and IV subunit 5A, partial [Cucurbita argyrosperma subsp. argyrosperma]6.7e-0473.53Show/hide
Query:  QKITRLFRIRKTVMQMLKDQGCFVGDFKIDKERK
        ++ITRLFRIRKTV+QMLKD+G FVGDF+ID  R+
Subjt:  QKITRLFRIRKTVMQMLKDQGCFVGDFKIDKERK
XP_022991826.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Cucurbita maxima]6.7e-0473.53Show/hide
Query:  QKITRLFRIRKTVMQMLKDQGCFVGDFKIDKERK
        ++ITRLFRIRKTV+QMLKD+G FVGDF+ID  R+
Subjt:  QKITRLFRIRKTVMQMLKDQGCFVGDFKIDKERK
TrEMBL top hitse value%identityAlignment
A0A2I4E6J8 DNA-directed RNA polymerases II and IV subunit 5A-like5.5e-0459.18Show/hide
Query:  QKITRLFRIRKTVMQMLKDQGCFVGDFKID--KERKGPKWMNKEKRQQV
        ++ITRLFRIR+TVMQMLKD+G FVGDF+ID  KE+   K+    KR+ +
Subjt:  QKITRLFRIRKTVMQMLKDQGCFVGDFKID--KERKGPKWMNKEKRQQV
A0A2I4FCU5 DNA-directed RNA polymerases II and IV subunit 5A-like7.2e-0459.18Show/hide
Query:  QKITRLFRIRKTVMQMLKDQGCFVGDFKID--KERKGPKWMNKEKRQQV
        ++ITRLFRIR+TVMQMLKD+G FVGDF+ID  KE+   K+    KR+ +
Subjt:  QKITRLFRIRKTVMQMLKDQGCFVGDFKID--KERKGPKWMNKEKRQQV
A0A6J1H699 DNA-directed RNA polymerases II and IV subunit 5A-like5.5e-0467.65Show/hide
Query:  QKITRLFRIRKTVMQMLKDQGCFVGDFKIDKERK
        ++ITRLFR+RKTV+QMLKD+G FVGDF++D  R+
Subjt:  QKITRLFRIRKTVMQMLKDQGCFVGDFKIDKERK
A0A6J1JRV4 DNA-directed RNA polymerases II and IV subunit 5A-like3.3e-0473.53Show/hide
Query:  QKITRLFRIRKTVMQMLKDQGCFVGDFKIDKERK
        ++ITRLFRIRKTV+QMLKD+G FVGDF+ID  R+
Subjt:  QKITRLFRIRKTVMQMLKDQGCFVGDFKIDKERK
A0A6J1KT45 DNA-directed RNA polymerases II and IV subunit 5A-like5.5e-0467.65Show/hide
Query:  QKITRLFRIRKTVMQMLKDQGCFVGDFKIDKERK
        ++ITRLFR+RKTV+QMLKD+G FVGDF++D  R+
Subjt:  QKITRLFRIRKTVMQMLKDQGCFVGDFKIDKERK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTTTCCCCACAACCCCTCCTTATTTTTCTCCCTCCAACCACAAACCTCTGATGAACCAGCTTCGTGTGGTGGTGATAGTCACCTTCTCCATGGTGGCGGGAAGCG
TGTTGAAGCGGCGTTTCGAATAGTTCAACGATCAATTCTATCAACACTCATGAAGACCCACAACAACACTATTCATCTAGTGTCTTTTTTCAACAACAATCCTCTTTTTA
AAGAGCACAATCAGAAAATCACCAGACTCTTTAGAATTCGAAAAACTGTGATGCAGATGTTGAAAGACCAAGGCTGCTTTGTTGGAGACTTCAAGATCGACAAGGAAAGG
AAGGGACCAAAATGGATGAACAAAGAAAAAAGGCAACAAGTGAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTTTCCCCACAACCCCTCCTTATTTTTCTCCCTCCAACCACAAACCTCTGATGAACCAGCTTCGTGTGGTGGTGATAGTCACCTTCTCCATGGTGGCGGGAAGCG
TGTTGAAGCGGCGTTTCGAATAGTTCAACGATCAATTCTATCAACACTCATGAAGACCCACAACAACACTATTCATCTAGTGTCTTTTTTCAACAACAATCCTCTTTTTA
AAGAGCACAATCAGAAAATCACCAGACTCTTTAGAATTCGAAAAACTGTGATGCAGATGTTGAAAGACCAAGGCTGCTTTGTTGGAGACTTCAAGATCGACAAGGAAAGG
AAGGGACCAAAATGGATGAACAAAGAAAAAAGGCAACAAGTGAGGTGA
Protein sequenceShow/hide protein sequence
MSFPHNPSLFFSLQPQTSDEPASCGGDSHLLHGGGKRVEAAFRIVQRSILSTLMKTHNNTIHLVSFFNNNPLFKEHNQKITRLFRIRKTVMQMLKDQGCFVGDFKIDKER
KGPKWMNKEKRQQVR