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Lag0005338 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005338
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr6:14619125..14619632
RNA-Seq ExpressionLag0005338
SyntenyLag0005338
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022158093.1 uncharacterized protein LOC111024662 [Momordica charantia]4.0e-2441.89Show/hide
Query:  LRSDPDRRNINKYCIFHRDVGHTTRECIQLRDEIEALIREGYLKEFV----------GNDRSK---------RPLPADQGRKRKAAIREAQQEPGEQGMY
        +++ P++R+  +YC+FHRD GH T++C  L++E+E LIR GYLKE+V           +D+S           P   + G+KRKA+++EA+  PG   +Y
Subjt:  LRSDPDRRNINKYCIFHRDVGHTTRECIQLRDEIEALIREGYLKEFV----------GNDRSK---------RPLPADQGRKRKAAIREAQQEPGEQGMY

Query:  SLLLDENSPMLEFPEKEVAGIRHPHNDALVVTLTIANAKVHRILVDGG
                  ++F E E   + HPHNDALV+TL I N KVHRILVDGG
Subjt:  SLLLDENSPMLEFPEKEVAGIRHPHNDALVVTLTIANAKVHRILVDGG

XP_022158669.1 uncharacterized protein LOC111025131 [Momordica charantia]1.2e-2338.67Show/hide
Query:  PRKLRSDPDRRNINKYCIFHRDVGHTTRECIQLRDEIEALIREGYLKEFVGNDRSKR------------------PLPADQGRKRKAAIREAQQEPGEQG
        P ++++   +R+  +YC+FHRD  H T++C  L++E+E LI+ GYLKE++ + ++ +                  P+  + GRKRKA +REA     +  
Subjt:  PRKLRSDPDRRNINKYCIFHRDVGHTTRECIQLRDEIEALIREGYLKEFVGNDRSKR------------------PLPADQGRKRKAAIREAQQEPGEQG

Query:  MYSLLLDENSPMLEFPEKEVAGIRHPHNDALVVTLTIANAKVHRILVDGG
        +Y   + + S  +EF E E   + HPHN+ALV+ L IAN KVHRILVDGG
Subjt:  MYSLLLDENSPMLEFPEKEVAGIRHPHNDALVVTLTIANAKVHRILVDGG

XP_022158827.1 uncharacterized protein LOC111025291 [Momordica charantia]2.1e-2546.21Show/hide
Query:  DPDRR-NINKYCIFHRDVGHTTRECIQLRDEIEALIREGYLKEFV---------GNDRSKR---------PLPADQGRKRKAAIREAQQEPGEQGMYSLL
        DP  + N  +YC+FHRD GH T++C  L++E+E L R GYLKE+V          ND+S           P+  + GRKRKA +REA+   G+  +Y   
Subjt:  DPDRR-NINKYCIFHRDVGHTTRECIQLRDEIEALIREGYLKEFV---------GNDRSKR---------PLPADQGRKRKAAIREAQQEPGEQGMYSLL

Query:  LDENSPMLEFPEKEVAGIRHPHNDALVVTLTIANAKVHRILVDGG
        +   S  +EF E E   + HPHNDALV+TL IAN KVHRILVDGG
Subjt:  LDENSPMLEFPEKEVAGIRHPHNDALVVTLTIANAKVHRILVDGG

XP_022158828.1 uncharacterized protein LOC111025292 [Momordica charantia]6.2e-2547.06Show/hide
Query:  KYCIFHRDVGHTTRECIQLRDEIEALIREGYLKEFV---------GNDRSKR---------PLPADQGRKRKAAIREAQQEPGEQGMYSLLLDENSPMLE
        +YC+FHRD GH T++C  L++E+E L R GYLKE+V          ND+S           P+  + GRKRKA +REA+   G+  +Y   +   S  +E
Subjt:  KYCIFHRDVGHTTRECIQLRDEIEALIREGYLKEFV---------GNDRSKR---------PLPADQGRKRKAAIREAQQEPGEQGMYSLLLDENSPMLE

Query:  FPEKEVAGIRHPHNDALVVTLTIANAKVHRILVDGG
        F E E   + HPHNDALV+TL IAN KVHRILVDGG
Subjt:  FPEKEVAGIRHPHNDALVVTLTIANAKVHRILVDGG

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]1.4e-2440Show/hide
Query:  PRKLRSDPDRRNINKYCIFHRDVGHTTRECIQLRDEIEALIREGYLKEFVGNDRSKR------------------PLPADQGRKRKAAIREAQQEPGEQG
        P ++++   +R+  +YC+FHRD GH T++C  L++E+E LIR GYLKE+V   ++ +                  P+  + GRKRKA +REA+    +  
Subjt:  PRKLRSDPDRRNINKYCIFHRDVGHTTRECIQLRDEIEALIREGYLKEFVGNDRSKR------------------PLPADQGRKRKAAIREAQQEPGEQG

Query:  MYSLLLDENSPMLEFPEKEVAGIRHPHNDALVVTLTIANAKVHRILVDGG
        +Y          +EF E E   + HPHNDALV+ L IAN KVHR+LVDGG
Subjt:  MYSLLLDENSPMLEFPEKEVAGIRHPHNDALVVTLTIANAKVHRILVDGG

TrEMBL top hitse value%identityAlignment
A0A6J1DV51 uncharacterized protein LOC1110246621.9e-2441.89Show/hide
Query:  LRSDPDRRNINKYCIFHRDVGHTTRECIQLRDEIEALIREGYLKEFV----------GNDRSK---------RPLPADQGRKRKAAIREAQQEPGEQGMY
        +++ P++R+  +YC+FHRD GH T++C  L++E+E LIR GYLKE+V           +D+S           P   + G+KRKA+++EA+  PG   +Y
Subjt:  LRSDPDRRNINKYCIFHRDVGHTTRECIQLRDEIEALIREGYLKEFV----------GNDRSK---------RPLPADQGRKRKAAIREAQQEPGEQGMY

Query:  SLLLDENSPMLEFPEKEVAGIRHPHNDALVVTLTIANAKVHRILVDGG
                  ++F E E   + HPHNDALV+TL I N KVHRILVDGG
Subjt:  SLLLDENSPMLEFPEKEVAGIRHPHNDALVVTLTIANAKVHRILVDGG

A0A6J1DWY0 uncharacterized protein LOC1110252936.7e-2540Show/hide
Query:  PRKLRSDPDRRNINKYCIFHRDVGHTTRECIQLRDEIEALIREGYLKEFVGNDRSKR------------------PLPADQGRKRKAAIREAQQEPGEQG
        P ++++   +R+  +YC+FHRD GH T++C  L++E+E LIR GYLKE+V   ++ +                  P+  + GRKRKA +REA+    +  
Subjt:  PRKLRSDPDRRNINKYCIFHRDVGHTTRECIQLRDEIEALIREGYLKEFVGNDRSKR------------------PLPADQGRKRKAAIREAQQEPGEQG

Query:  MYSLLLDENSPMLEFPEKEVAGIRHPHNDALVVTLTIANAKVHRILVDGG
        +Y          +EF E E   + HPHNDALV+ L IAN KVHR+LVDGG
Subjt:  MYSLLLDENSPMLEFPEKEVAGIRHPHNDALVVTLTIANAKVHRILVDGG

A0A6J1DX67 uncharacterized protein LOC1110252923.0e-2547.06Show/hide
Query:  KYCIFHRDVGHTTRECIQLRDEIEALIREGYLKEFV---------GNDRSKR---------PLPADQGRKRKAAIREAQQEPGEQGMYSLLLDENSPMLE
        +YC+FHRD GH T++C  L++E+E L R GYLKE+V          ND+S           P+  + GRKRKA +REA+   G+  +Y   +   S  +E
Subjt:  KYCIFHRDVGHTTRECIQLRDEIEALIREGYLKEFV---------GNDRSKR---------PLPADQGRKRKAAIREAQQEPGEQGMYSLLLDENSPMLE

Query:  FPEKEVAGIRHPHNDALVVTLTIANAKVHRILVDGG
        F E E   + HPHNDALV+TL IAN KVHRILVDGG
Subjt:  FPEKEVAGIRHPHNDALVVTLTIANAKVHRILVDGG

A0A6J1DY78 uncharacterized protein LOC1110252911.0e-2546.21Show/hide
Query:  DPDRR-NINKYCIFHRDVGHTTRECIQLRDEIEALIREGYLKEFV---------GNDRSKR---------PLPADQGRKRKAAIREAQQEPGEQGMYSLL
        DP  + N  +YC+FHRD GH T++C  L++E+E L R GYLKE+V          ND+S           P+  + GRKRKA +REA+   G+  +Y   
Subjt:  DPDRR-NINKYCIFHRDVGHTTRECIQLRDEIEALIREGYLKEFV---------GNDRSKR---------PLPADQGRKRKAAIREAQQEPGEQGMYSLL

Query:  LDENSPMLEFPEKEVAGIRHPHNDALVVTLTIANAKVHRILVDGG
        +   S  +EF E E   + HPHNDALV+TL IAN KVHRILVDGG
Subjt:  LDENSPMLEFPEKEVAGIRHPHNDALVVTLTIANAKVHRILVDGG

A0A6J1E032 uncharacterized protein LOC1110251315.6e-2438.67Show/hide
Query:  PRKLRSDPDRRNINKYCIFHRDVGHTTRECIQLRDEIEALIREGYLKEFVGNDRSKR------------------PLPADQGRKRKAAIREAQQEPGEQG
        P ++++   +R+  +YC+FHRD  H T++C  L++E+E LI+ GYLKE++ + ++ +                  P+  + GRKRKA +REA     +  
Subjt:  PRKLRSDPDRRNINKYCIFHRDVGHTTRECIQLRDEIEALIREGYLKEFVGNDRSKR------------------PLPADQGRKRKAAIREAQQEPGEQG

Query:  MYSLLLDENSPMLEFPEKEVAGIRHPHNDALVVTLTIANAKVHRILVDGG
        +Y   + + S  +EF E E   + HPHN+ALV+ L IAN KVHRILVDGG
Subjt:  MYSLLLDENSPMLEFPEKEVAGIRHPHNDALVVTLTIANAKVHRILVDGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCAGAAAATTGAGATCAGACCCCGACAGGAGGAACATAAACAAATACTGCATTTTCCACAGAGACGTCGGTCACACAACCCGGGAATGCATACAATTGAGGGACGA
GATAGAAGCCCTAATTCGAGAAGGTTACCTCAAGGAGTTTGTGGGGAATGACAGAAGCAAGAGGCCACTGCCAGCAGATCAAGGTAGAAAGCGAAAGGCTGCAATTCGAG
AGGCACAACAAGAGCCTGGAGAGCAAGGTATGTACTCGCTCCTCCTCGATGAAAACTCACCAATGTTAGAGTTTCCAGAGAAAGAGGTCGCGGGGATACGTCATCCGCAC
AACGATGCGCTGGTGGTCACTCTAACGATTGCCAACGCAAAAGTTCACCGGATCCTCGTTGATGGGGGCGTTCTGCTGCTGTACTCTCAACTACTGCGTTCCACGCCATG
A
mRNA sequenceShow/hide mRNA sequence
ATGCCCAGAAAATTGAGATCAGACCCCGACAGGAGGAACATAAACAAATACTGCATTTTCCACAGAGACGTCGGTCACACAACCCGGGAATGCATACAATTGAGGGACGA
GATAGAAGCCCTAATTCGAGAAGGTTACCTCAAGGAGTTTGTGGGGAATGACAGAAGCAAGAGGCCACTGCCAGCAGATCAAGGTAGAAAGCGAAAGGCTGCAATTCGAG
AGGCACAACAAGAGCCTGGAGAGCAAGGTATGTACTCGCTCCTCCTCGATGAAAACTCACCAATGTTAGAGTTTCCAGAGAAAGAGGTCGCGGGGATACGTCATCCGCAC
AACGATGCGCTGGTGGTCACTCTAACGATTGCCAACGCAAAAGTTCACCGGATCCTCGTTGATGGGGGCGTTCTGCTGCTGTACTCTCAACTACTGCGTTCCACGCCATG
A
Protein sequenceShow/hide protein sequence
MPRKLRSDPDRRNINKYCIFHRDVGHTTRECIQLRDEIEALIREGYLKEFVGNDRSKRPLPADQGRKRKAAIREAQQEPGEQGMYSLLLDENSPMLEFPEKEVAGIRHPH
NDALVVTLTIANAKVHRILVDGGVLLLYSQLLRSTP