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Lag0005366 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005366
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr6:15371377..15374177
RNA-Seq ExpressionLag0005366
SyntenyLag0005366
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032454.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]8.0e-0667.44Show/hide
Query:  DPRRAPMARGKAILGYCALKAARASSFNQASAWMRLLSPCCAF
        DP+RAP ARG+A   +CALKAAR S+FNQA A + LLSPCC F
Subjt:  DPRRAPMARGKAILGYCALKAARASSFNQASAWMRLLSPCCAF
TrEMBL top hitse value%identityAlignment
A0A5A7SMQ7 Ty3/gypsy retrotransposon protein3.9e-0667.44Show/hide
Query:  DPRRAPMARGKAILGYCALKAARASSFNQASAWMRLLSPCCAF
        DP+RAP ARG+A   +CALKAAR S+FNQA A + LLSPCC F
Subjt:  DPRRAPMARGKAILGYCALKAARASSFNQASAWMRLLSPCCAF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAGGGGAACGAGGAAAAAACCTCTAACTCACACAACTAAACAACCTAGGCTATCTAGGTCAGTCTACAGGAACGACATCGCTCTGATACCAACTGTAACGCCCCA
GAACCACAGAAATAAACATTTCAGGCTATCTAGTAATGCAACTAAGACAAGCAGAACACAAAAAGACTCAGCGCCTAGGGATTTTCCTCATAGTCCTCCTCGCCACCAAG
GTCTGGATCATCCTCGATACCTGCAACATCTAAAATATTGGGGGGAAGGTGGGGAAGGGGGTATTAGTACAACCGCGGTACTGACCACGCACGATTTACGCGTCATGCTA
CGCTACCATCCACATGCCTTACGGTCATGCTACGCTAAACTAACCGCATGCATTACGCGTCATGCTACGCAAGCCACACACGTGCATTACGCGCCAAGCTACGCTAAACT
ATTTGCATGCATTACGAGTCATGCTACGCTAATCCAAACACGTGAATTACGTGCCACGCTGCGCACCTACACACAGTGTTTTCAAGGCGACCCAAGGCGCGCGCCTATGG
CGAGAGGCAAGGCGATCTTGGGCTACTGCGCCTTGAAGGCAGCTAGGGCGAGCTCCTTCAACCAGGCGAGCGCTTGGATGCGCCTTTTGTCGCCTTGTTGTGCCTTCAAA
AATGGTGAAGGCGAGCGCCTGTTTTTTTTTTCCCTAATATTTCATAACAGGTGTTGTCCAAGGTCTGAAACCACACGAAACCAACACCAAAAAGGCACCCAAGGGTTAGA
AATTGCACTAAAGCCCACCATAACAATTACCAAAGGTTTTGGGGCATGGAGACTTACCGATCAACACCAAACAGACCCAATTAGGTGCTGTACAGCAGCTGCAAATGGCC
CGAATCTGCAATTGGGAAGTCGTTACAGCATGGGTAACCAAGATCTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGAGGGGAACGAGGAAAAAACCTCTAACTCACACAACTAAACAACCTAGGCTATCTAGGTCAGTCTACAGGAACGACATCGCTCTGATACCAACTGTAACGCCCCA
GAACCACAGAAATAAACATTTCAGGCTATCTAGTAATGCAACTAAGACAAGCAGAACACAAAAAGACTCAGCGCCTAGGGATTTTCCTCATAGTCCTCCTCGCCACCAAG
GTCTGGATCATCCTCGATACCTGCAACATCTAAAATATTGGGGGGAAGGTGGGGAAGGGGGTATTAGTACAACCGCGGTACTGACCACGCACGATTTACGCGTCATGCTA
CGCTACCATCCACATGCCTTACGGTCATGCTACGCTAAACTAACCGCATGCATTACGCGTCATGCTACGCAAGCCACACACGTGCATTACGCGCCAAGCTACGCTAAACT
ATTTGCATGCATTACGAGTCATGCTACGCTAATCCAAACACGTGAATTACGTGCCACGCTGCGCACCTACACACAGTGTTTTCAAGGCGACCCAAGGCGCGCGCCTATGG
CGAGAGGCAAGGCGATCTTGGGCTACTGCGCCTTGAAGGCAGCTAGGGCGAGCTCCTTCAACCAGGCGAGCGCTTGGATGCGCCTTTTGTCGCCTTGTTGTGCCTTCAAA
AATGGTGAAGGCGAGCGCCTGTTTTTTTTTTCCCTAATATTTCATAACAGGTGTTGTCCAAGGTCTGAAACCACACGAAACCAACACCAAAAAGGCACCCAAGGGTTAGA
AATTGCACTAAAGCCCACCATAACAATTACCAAAGGTTTTGGGGCATGGAGACTTACCGATCAACACCAAACAGACCCAATTAGGTGCTGTACAGCAGCTGCAAATGGCC
CGAATCTGCAATTGGGAAGTCGTTACAGCATGGGTAACCAAGATCTTTAG
Protein sequenceShow/hide protein sequence
MERGTRKKPLTHTTKQPRLSRSVYRNDIALIPTVTPQNHRNKHFRLSSNATKTSRTQKDSAPRDFPHSPPRHQGLDHPRYLQHLKYWGEGGEGGISTTAVLTTHDLRVML
RYHPHALRSCYAKLTACITRHATQATHVHYAPSYAKLFACITSHATLIQTRELRATLRTYTQCFQGDPRRAPMARGKAILGYCALKAARASSFNQASAWMRLLSPCCAFK
NGEGERLFFFSLIFHNRCCPRSETTRNQHQKGTQGLEIALKPTITITKGFGAWRLTDQHQTDPIRCCTAAANGPNLQLGSRYSMGNQDL