; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0005369 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005369
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionpentatricopeptide repeat-containing protein At3g62470, mitochondrial-like
Genome locationchr6:15383663..15384106
RNA-Seq ExpressionLag0005369
SyntenyLag0005369
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048071.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]6.6e-5980.41Show/hide
Query:  MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGFCDL-NSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVI
        MFDSRSH  FH+SH QIPF+L + SSFSVPQE LLIV  SR  +FR PLFPS DLL RG+CDL NSDSDS+IECEKSEDDD E  SR DST+VDRVCKVI
Subjt:  MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGFCDL-NSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVI

Query:  DELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA
        DELFALDRNMEA+ DECG KLSHDLVLEVLARFK+ARKPAFRFFCWAA
Subjt:  DELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA

XP_008453445.1 PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Cucumis melo]1.6e-5778.38Show/hide
Query:  MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGFCDL-NSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVI
        MFDSRSH  FH+SH QIPF+L + SSFSVPQE LL V  SR  +FR PLFPS DLL RG+CDL NSDSDS+IECEKSEDDD E  SR DST+VDRVCKVI
Subjt:  MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGFCDL-NSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVI

Query:  DELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA
        DELFALDRNMEA+ DECG +L+HDLVLEVLARFK+ARKPAFRFFCWAA
Subjt:  DELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA

XP_022937612.1 pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Cucurbita moschata]8.9e-5676.87Show/hide
Query:  MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGFCDLNSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVID
        MFDSRSHG FH+S  QIPF+L H SSF VPQET+LI  SSR  NFR P FP FDLLVRGFCD NS SDS+IECE SEDDD E  SRA+  +VDRVCKV+D
Subjt:  MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGFCDLNSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVID

Query:  ELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA
        ELFALDRNMEA+ DECG  LSHDLVL VL RFKQARKPAFRFFCWAA
Subjt:  ELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA

XP_022965638.1 pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Cucurbita maxima]2.0e-5576.87Show/hide
Query:  MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGFCDLNSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVID
        MFDSRSHG FH+S  QIPF+L H SSF VPQET+LI  SSR  NFR P FP FDLLVRGFCD NSDSDS+IE E  EDDD E  SRA+S +VDRVCKV+D
Subjt:  MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGFCDLNSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVID

Query:  ELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA
        ELFALDRNMEA+ DECG  LSHDLVL VL RFKQARKPAFRFFCWAA
Subjt:  ELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA

XP_023537572.1 pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Cucurbita pepo subsp. pepo]4.0e-5677.55Show/hide
Query:  MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGFCDLNSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVID
        MFDSRSHG FH+S  QIPF+L H SSF VPQET+LI  SSR  NFR P FP FDLLVRGFCD NS SDS+IECE SEDDD E  SRA+S +VDRVCKV+D
Subjt:  MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGFCDLNSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVID

Query:  ELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA
        ELFALDRNMEA+ DECG  LSHDLVL VL RFKQARKPAFRFFCWAA
Subjt:  ELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA

TrEMBL top hitse value%identityAlignment
A0A0A0LK05 Uncharacterized protein5.8e-5375Show/hide
Query:  MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGFCDL-NSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVI
        MFDS SH  FH SH QIPF+L + SSFSVPQE LLIV + R  +FR P FPS DLL RGFCDL N DSDS+IECEKSE++D   +   DST+V+RVCKVI
Subjt:  MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGFCDL-NSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVI

Query:  DELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA
        DELFALDRNMEA+ DECG KLSHDLVLEVLARFKQARKPAFRFFCWAA
Subjt:  DELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA

A0A1S3BWC0 pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like7.8e-5878.38Show/hide
Query:  MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGFCDL-NSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVI
        MFDSRSH  FH+SH QIPF+L + SSFSVPQE LL V  SR  +FR PLFPS DLL RG+CDL NSDSDS+IECEKSEDDD E  SR DST+VDRVCKVI
Subjt:  MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGFCDL-NSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVI

Query:  DELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA
        DELFALDRNMEA+ DECG +L+HDLVLEVLARFK+ARKPAFRFFCWAA
Subjt:  DELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA

A0A5D3BDC8 Pentatricopeptide repeat-containing protein3.2e-5980.41Show/hide
Query:  MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGFCDL-NSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVI
        MFDSRSH  FH+SH QIPF+L + SSFSVPQE LLIV  SR  +FR PLFPS DLL RG+CDL NSDSDS+IECEKSEDDD E  SR DST+VDRVCKVI
Subjt:  MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGFCDL-NSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVI

Query:  DELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA
        DELFALDRNMEA+ DECG KLSHDLVLEVLARFK+ARKPAFRFFCWAA
Subjt:  DELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA

A0A6J1FBQ0 pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like4.3e-5676.87Show/hide
Query:  MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGFCDLNSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVID
        MFDSRSHG FH+S  QIPF+L H SSF VPQET+LI  SSR  NFR P FP FDLLVRGFCD NS SDS+IECE SEDDD E  SRA+  +VDRVCKV+D
Subjt:  MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGFCDLNSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVID

Query:  ELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA
        ELFALDRNMEA+ DECG  LSHDLVL VL RFKQARKPAFRFFCWAA
Subjt:  ELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA

A0A6J1HPJ9 pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like9.6e-5676.87Show/hide
Query:  MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGFCDLNSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVID
        MFDSRSHG FH+S  QIPF+L H SSF VPQET+LI  SSR  NFR P FP FDLLVRGFCD NSDSDS+IE E  EDDD E  SRA+S +VDRVCKV+D
Subjt:  MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGFCDLNSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVID

Query:  ELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA
        ELFALDRNMEA+ DECG  LSHDLVL VL RFKQARKPAFRFFCWAA
Subjt:  ELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA

SwissProt top hitse value%identityAlignment
Q3EAF8 Pentatricopeptide repeat-containing protein At3g62540, mitochondrial1.6e-2056.52Show/hide
Query:  GFCDLNSDSDSKIECEKSEDDDLERSSRADST---QVDRVCKVIDELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA
        G  +++   D ++E E   D++   S    ST   +V+RVCKVIDELFALDRNMEA+ DE    LSHDL++EVL RF+ ARKPAFRFFCWAA
Subjt:  GFCDLNSDSDSKIECEKSEDDDLERSSRADST---QVDRVCKVIDELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA

Q9LEQ7 Pentatricopeptide repeat-containing protein At5g14820, mitochondrial1.6e-2056.52Show/hide
Query:  GFCDLNSDSDSKIECEKSEDDDLERSSRADST---QVDRVCKVIDELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA
        G  +++   D ++E E   D++   S    ST   +V+RVCKVIDELFALDRNMEA+ DE    LSHDL++EVL RF+ ARKPAFRFFCWAA
Subjt:  GFCDLNSDSDSKIECEKSEDDDLERSSRADST---QVDRVCKVIDELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA

Q9LZP3 Pentatricopeptide repeat-containing protein At3g62470, mitochondrial1.6e-2056.52Show/hide
Query:  GFCDLNSDSDSKIECEKSEDDDLERSSRADST---QVDRVCKVIDELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA
        G  +++   D ++E E   D++   S    ST   +V+RVCKVIDELFALDRNMEA+ DE    LSHDL++EVL RF+ ARKPAFRFFCWAA
Subjt:  GFCDLNSDSDSKIECEKSEDDDLERSSRADST---QVDRVCKVIDELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA

Arabidopsis top hitse value%identityAlignment
AT3G62470.1 Pentatricopeptide repeat (PPR) superfamily protein1.2e-2156.52Show/hide
Query:  GFCDLNSDSDSKIECEKSEDDDLERSSRADST---QVDRVCKVIDELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA
        G  +++   D ++E E   D++   S    ST   +V+RVCKVIDELFALDRNMEA+ DE    LSHDL++EVL RF+ ARKPAFRFFCWAA
Subjt:  GFCDLNSDSDSKIECEKSEDDDLERSSRADST---QVDRVCKVIDELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA

AT3G62540.1 Pentatricopeptide repeat (PPR) superfamily protein1.2e-2156.52Show/hide
Query:  GFCDLNSDSDSKIECEKSEDDDLERSSRADST---QVDRVCKVIDELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA
        G  +++   D ++E E   D++   S    ST   +V+RVCKVIDELFALDRNMEA+ DE    LSHDL++EVL RF+ ARKPAFRFFCWAA
Subjt:  GFCDLNSDSDSKIECEKSEDDDLERSSRADST---QVDRVCKVIDELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA

AT5G14820.1 Pentatricopeptide repeat (PPR) superfamily protein1.2e-2156.52Show/hide
Query:  GFCDLNSDSDSKIECEKSEDDDLERSSRADST---QVDRVCKVIDELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA
        G  +++   D ++E E   D++   S    ST   +V+RVCKVIDELFALDRNMEA+ DE    LSHDL++EVL RF+ ARKPAFRFFCWAA
Subjt:  GFCDLNSDSDSKIECEKSEDDDLERSSRADST---QVDRVCKVIDELFALDRNMEAIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGATTCTCGTTCTCATGGTGGTTTTCATACTTCTCATCGTCAAATTCCATTTGTTTTGCTACACACCTCTTCATTCTCTGTTCCTCAAGAAACATTGTTGATCGT
TCAGAGTTCGAGAGCATTTAATTTCAGAAAACCCCTTTTCCCCAGTTTTGATTTACTAGTTAGAGGCTTTTGCGATCTGAATTCGGATTCGGATTCCAAAATTGAATGTG
AGAAGAGTGAGGATGATGATCTTGAGCGTAGTTCAAGGGCGGATTCAACCCAAGTTGATCGTGTATGCAAGGTGATCGATGAATTGTTTGCGTTAGATAGGAACATGGAG
GCTATTTTTGATGAATGTGGTTTCAAATTGTCTCACGATCTGGTTTTGGAGGTCTTGGCAAGGTTCAAACAAGCTCGAAAACCAGCATTTAGATTCTTCTGTTGGGCTGC
TTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTGATTCTCGTTCTCATGGTGGTTTTCATACTTCTCATCGTCAAATTCCATTTGTTTTGCTACACACCTCTTCATTCTCTGTTCCTCAAGAAACATTGTTGATCGT
TCAGAGTTCGAGAGCATTTAATTTCAGAAAACCCCTTTTCCCCAGTTTTGATTTACTAGTTAGAGGCTTTTGCGATCTGAATTCGGATTCGGATTCCAAAATTGAATGTG
AGAAGAGTGAGGATGATGATCTTGAGCGTAGTTCAAGGGCGGATTCAACCCAAGTTGATCGTGTATGCAAGGTGATCGATGAATTGTTTGCGTTAGATAGGAACATGGAG
GCTATTTTTGATGAATGTGGTTTCAAATTGTCTCACGATCTGGTTTTGGAGGTCTTGGCAAGGTTCAAACAAGCTCGAAAACCAGCATTTAGATTCTTCTGTTGGGCTGC
TTAG
Protein sequenceShow/hide protein sequence
MFDSRSHGGFHTSHRQIPFVLLHTSSFSVPQETLLIVQSSRAFNFRKPLFPSFDLLVRGFCDLNSDSDSKIECEKSEDDDLERSSRADSTQVDRVCKVIDELFALDRNME
AIFDECGFKLSHDLVLEVLARFKQARKPAFRFFCWAA