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Lag0005399 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005399
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationchr6:16553866..16555675
RNA-Seq ExpressionLag0005399
SyntenyLag0005399
Gene Ontology termsGO:0006284 - base-excision repair (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity (molecular function)
GO:0008081 - phosphoric diester hydrolase activity (molecular function)
GO:0008311 - double-stranded DNA 3'-5' exodeoxyribonuclease activity (molecular function)
InterPro domainsIPR004808 - AP endonuclease 1
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW13148.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]1.9e-1635.94Show/hide
Query:  DIPKGFQECFREMGTEDAECLEGTKALVLGHRGVLMKIITWNVRGIGACPKRAVVKDILGKANLYIVILQETRLEHVDRRVINSIWSSKRIGWLALNAYG
        + P+G + C+  +G   + C               MKII+WNVRG+G+  KR +VKD L   N  +V++QET+ E+ DRR + S+W+ +   W+AL A G
Subjt:  DIPKGFQECFREMGTEDAECLEGTKALVLGHRGVLMKIITWNVRGIGACPKRAVVKDILGKANLYIVILQETRLEHVDRRVINSIWSSKRIGWLALNAYG

Query:  STGGILLMWKEDSVTIKDSLLESFSISI
        ++GGIL++W   ++  ++ ++ SFS+S+
Subjt:  STGGILLMWKEDSVTIKDSLLESFSISI

RVW27472.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]1.5e-1635.94Show/hide
Query:  DIPKGFQECFREMGTEDAECLEGTKALVLGHRGVLMKIITWNVRGIGACPKRAVVKDILGKANLYIVILQETRLEHVDRRVINSIWSSKRIGWLALNAYG
        + P+G + C+  +G   + C               MKII+WNVRG+G+  KR +VKD L   N  +V++QET+ E+ DRR + S+W+++   W+AL A G
Subjt:  DIPKGFQECFREMGTEDAECLEGTKALVLGHRGVLMKIITWNVRGIGACPKRAVVKDILGKANLYIVILQETRLEHVDRRVINSIWSSKRIGWLALNAYG

Query:  STGGILLMWKEDSVTIKDSLLESFSISI
        ++GGIL++W   ++  ++ +  SFS+S+
Subjt:  STGGILLMWKEDSVTIKDSLLESFSISI

RVW94236.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]2.3e-1737.24Show/hide
Query:  MIDDIPKG-FQECFREMGTEDAECLEGTKA----------LVLGHRGVL---MKIITWNVRGIGACPKRAVVKDILGKANLYIVILQETRLEHVDRRVIN
        +ID  P G + +C R        C+ G +A            LG  G L   MKII+WNVRG+G+  KR +VKD L   N  +V++QET+ E+ DRR + 
Subjt:  MIDDIPKG-FQECFREMGTEDAECLEGTKA----------LVLGHRGVL---MKIITWNVRGIGACPKRAVVKDILGKANLYIVILQETRLEHVDRRVIN

Query:  SIWSSKRIGWLALNAYGSTGGILLMWKEDSVTIKDSLLESFSISI
        S+W+ +   W+AL A G++GGIL++W   +++ ++ ++ SFS+S+
Subjt:  SIWSSKRIGWLALNAYGSTGGILLMWKEDSVTIKDSLLESFSISI

RVX04307.1 Beta-arabinofuranosyltransferase RAY1 [Vitis vinifera]1.9e-1637.5Show/hide
Query:  DIPKGFQECFREMGTEDAECLEGTKALVLGHRGVLMKIITWNVRGIGACPKRAVVKDILGKANLYIVILQETRLEHVDRRVINSIWSSKRIGWLALNAYG
        + P+G + C+   G   + C               MKII+WNVRG+G+  KR +VKD L   N  +V++QET+ E  DRR + S+W+++   W+AL A G
Subjt:  DIPKGFQECFREMGTEDAECLEGTKALVLGHRGVLMKIITWNVRGIGACPKRAVVKDILGKANLYIVILQETRLEHVDRRVINSIWSSKRIGWLALNAYG

Query:  STGGILLMWKEDSVTIKDSLLESFSISI
        ++GGIL++W   ++  ++ +L SFSIS+
Subjt:  STGGILLMWKEDSVTIKDSLLESFSISI

XP_010269625.1 PREDICTED: uncharacterized protein LOC104606223 [Nelumbo nucifera]3.8e-1745.26Show/hide
Query:  MKIITWNVRGIGACPKRAVVKDILGKANLYIVILQETRLEHVDRRVINSIWSSKRIGWLALNAYGSTGGILLMWKEDSVTIKDSLLESFSISIDC
        MKII+WNVRG+G+  KR ++KD+L +    IV+LQE++L  +D R + S W S+ +GW    ++G++GGI+ +WKED V + + L+  FS+SI C
Subjt:  MKIITWNVRGIGACPKRAVVKDILGKANLYIVILQETRLEHVDRRVINSIWSSKRIGWLALNAYGSTGGILLMWKEDSVTIKDSLLESFSISIDC

TrEMBL top hitse value%identityAlignment
A0A1U8B190 uncharacterized protein LOC1046062231.9e-1745.26Show/hide
Query:  MKIITWNVRGIGACPKRAVVKDILGKANLYIVILQETRLEHVDRRVINSIWSSKRIGWLALNAYGSTGGILLMWKEDSVTIKDSLLESFSISIDC
        MKII+WNVRG+G+  KR ++KD+L +    IV+LQE++L  +D R + S W S+ +GW    ++G++GGI+ +WKED V + + L+  FS+SI C
Subjt:  MKIITWNVRGIGACPKRAVVKDILGKANLYIVILQETRLEHVDRRVINSIWSSKRIGWLALNAYGSTGGILLMWKEDSVTIKDSLLESFSISIDC

A0A438BQB2 Transposon TX1 uncharacterized 149 kDa protein9.2e-1735.94Show/hide
Query:  DIPKGFQECFREMGTEDAECLEGTKALVLGHRGVLMKIITWNVRGIGACPKRAVVKDILGKANLYIVILQETRLEHVDRRVINSIWSSKRIGWLALNAYG
        + P+G + C+  +G   + C               MKII+WNVRG+G+  KR +VKD L   N  +V++QET+ E+ DRR + S+W+ +   W+AL A G
Subjt:  DIPKGFQECFREMGTEDAECLEGTKALVLGHRGVLMKIITWNVRGIGACPKRAVVKDILGKANLYIVILQETRLEHVDRRVINSIWSSKRIGWLALNAYG

Query:  STGGILLMWKEDSVTIKDSLLESFSISI
        ++GGIL++W   ++  ++ ++ SFS+S+
Subjt:  STGGILLMWKEDSVTIKDSLLESFSISI

A0A438CWA7 Transposon TX1 uncharacterized 149 kDa protein7.1e-1735.94Show/hide
Query:  DIPKGFQECFREMGTEDAECLEGTKALVLGHRGVLMKIITWNVRGIGACPKRAVVKDILGKANLYIVILQETRLEHVDRRVINSIWSSKRIGWLALNAYG
        + P+G + C+  +G   + C               MKII+WNVRG+G+  KR +VKD L   N  +V++QET+ E+ DRR + S+W+++   W+AL A G
Subjt:  DIPKGFQECFREMGTEDAECLEGTKALVLGHRGVLMKIITWNVRGIGACPKRAVVKDILGKANLYIVILQETRLEHVDRRVINSIWSSKRIGWLALNAYG

Query:  STGGILLMWKEDSVTIKDSLLESFSISI
        ++GGIL++W   ++  ++ +  SFS+S+
Subjt:  STGGILLMWKEDSVTIKDSLLESFSISI

A0A438IBZ1 LINE-1 retrotransposable element ORF2 protein1.1e-1737.24Show/hide
Query:  MIDDIPKG-FQECFREMGTEDAECLEGTKA----------LVLGHRGVL---MKIITWNVRGIGACPKRAVVKDILGKANLYIVILQETRLEHVDRRVIN
        +ID  P G + +C R        C+ G +A            LG  G L   MKII+WNVRG+G+  KR +VKD L   N  +V++QET+ E+ DRR + 
Subjt:  MIDDIPKG-FQECFREMGTEDAECLEGTKA----------LVLGHRGVL---MKIITWNVRGIGACPKRAVVKDILGKANLYIVILQETRLEHVDRRVIN

Query:  SIWSSKRIGWLALNAYGSTGGILLMWKEDSVTIKDSLLESFSISI
        S+W+ +   W+AL A G++GGIL++W   +++ ++ ++ SFS+S+
Subjt:  SIWSSKRIGWLALNAYGSTGGILLMWKEDSVTIKDSLLESFSISI

A0A438J5R7 Beta-arabinofuranosyltransferase RAY19.2e-1737.5Show/hide
Query:  DIPKGFQECFREMGTEDAECLEGTKALVLGHRGVLMKIITWNVRGIGACPKRAVVKDILGKANLYIVILQETRLEHVDRRVINSIWSSKRIGWLALNAYG
        + P+G + C+   G   + C               MKII+WNVRG+G+  KR +VKD L   N  +V++QET+ E  DRR + S+W+++   W+AL A G
Subjt:  DIPKGFQECFREMGTEDAECLEGTKALVLGHRGVLMKIITWNVRGIGACPKRAVVKDILGKANLYIVILQETRLEHVDRRVINSIWSSKRIGWLALNAYG

Query:  STGGILLMWKEDSVTIKDSLLESFSISI
        ++GGIL++W   ++  ++ +L SFSIS+
Subjt:  STGGILLMWKEDSVTIKDSLLESFSISI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGACGATATCCCTAAGGGATTTCAGGAGTGCTTTCGTGAGATGGGAACAGAAGACGCAGAATGCTTAGAGGGGACAAAAGCGTTAGTGTTGGGCCATAGAGGTGT
CTTGATGAAGATCATCACGTGGAATGTTAGAGGGATCGGGGCTTGCCCTAAAAGAGCAGTGGTGAAAGATATTCTGGGCAAAGCAAATCTGTATATTGTCATTCTTCAAG
AAACTAGACTGGAGCATGTTGATAGGAGGGTGATTAATTCCATCTGGAGTTCTAAAAGGATCGGTTGGCTAGCTTTAAATGCTTATGGCTCGACAGGGGGCATTCTTCTT
ATGTGGAAGGAAGACAGTGTCACCATCAAAGACTCCTTACTAGAAAGCTTCTCCATATCTATAGATTGTTGCTTTAATTGGAGTACTGAAGGGCATCTGGTGTTTATCTG
GAGATTTCAATGTGGTGAGATGGATAGAAGATTTGTTGAATGGGTTGAAACGCTTGTTCTTGAATTTGAAGTTGTCTCAAGGACTTTGCAACTTGTTCTTGAGATTGAAG
TTGTCTCAAGGGCTTTGCAGCTTGTTCTTGAGATTGAAATTGTCTCAAGAGCTTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTGACGATATCCCTAAGGGATTTCAGGAGTGCTTTCGTGAGATGGGAACAGAAGACGCAGAATGCTTAGAGGGGACAAAAGCGTTAGTGTTGGGCCATAGAGGTGT
CTTGATGAAGATCATCACGTGGAATGTTAGAGGGATCGGGGCTTGCCCTAAAAGAGCAGTGGTGAAAGATATTCTGGGCAAAGCAAATCTGTATATTGTCATTCTTCAAG
AAACTAGACTGGAGCATGTTGATAGGAGGGTGATTAATTCCATCTGGAGTTCTAAAAGGATCGGTTGGCTAGCTTTAAATGCTTATGGCTCGACAGGGGGCATTCTTCTT
ATGTGGAAGGAAGACAGTGTCACCATCAAAGACTCCTTACTAGAAAGCTTCTCCATATCTATAGATTGTTGCTTTAATTGGAGTACTGAAGGGCATCTGGTGTTTATCTG
GAGATTTCAATGTGGTGAGATGGATAGAAGATTTGTTGAATGGGTTGAAACGCTTGTTCTTGAATTTGAAGTTGTCTCAAGGACTTTGCAACTTGTTCTTGAGATTGAAG
TTGTCTCAAGGGCTTTGCAGCTTGTTCTTGAGATTGAAATTGTCTCAAGAGCTTTGTGA
Protein sequenceShow/hide protein sequence
MIDDIPKGFQECFREMGTEDAECLEGTKALVLGHRGVLMKIITWNVRGIGACPKRAVVKDILGKANLYIVILQETRLEHVDRRVINSIWSSKRIGWLALNAYGSTGGILL
MWKEDSVTIKDSLLESFSISIDCCFNWSTEGHLVFIWRFQCGEMDRRFVEWVETLVLEFEVVSRTLQLVLEIEVVSRALQLVLEIEIVSRAL