; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0005412 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005412
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr6:17079797..17084380
RNA-Seq ExpressionLag0005412
SyntenyLag0005412
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ERN04558.1 hypothetical protein AMTR_s04509p00000770, partial [Amborella trichopoda]6.3e-3753.64Show/hide
Query:  RRINRVTSPQEFDLEIKDKKGSENVIADHLSRLDP---TSSLLEQSAISDSFSDEQIFAVEVKVVNNTPWYADITDFLVKGVTPIDMDWRQVQRFKHDAK
        R I  V   QEFDLEI+D+KG+EN +ADHLSRL+    +S L  +  I DSF DEQ+  VE       PWYADI ++LV G  P D   +Q+++F HD+K
Subjt:  RRINRVTSPQEFDLEIKDKKGSENVIADHLSRLDP---TSSLLEQSAISDSFSDEQIFAVEVKVVNNTPWYADITDFLVKGVTPIDMDWRQVQRFKHDAK

Query:  LFYWDEPFMYKQCSDGIIRRCVSGDEVKEILEQCHSSPYGGHFSDQRTAMR
         ++WDEP++YKQC D I+RRCV   EV+ ILE CHS+PYGGHF  QRTA +
Subjt:  LFYWDEPFMYKQCSDGIIRRCVSGDEVKEILEQCHSSPYGGHFSDQRTAMR

PIM97577.1 DNA-directed DNA polymerase [Handroanthus impetiginosus]2.4e-3650.67Show/hide
Query:  RRINRVTSPQEFDLEIKDKKGSENVIADHLSRLDPTSSLLEQSAISDSFSDEQIFAVEVKVVNNTPWYADITDFLVKGVTPIDMDWRQVQRFKHDAKLFY
        R I  V   QEFDLEI+D+KG+EN IADHLSRL+  +   E + I+D+F DEQ+ A+   V ++ PWYADI ++L  G+ P D+  +Q ++F  D + ++
Subjt:  RRINRVTSPQEFDLEIKDKKGSENVIADHLSRLDPTSSLLEQSAISDSFSDEQIFAVEVKVVNNTPWYADITDFLVKGVTPIDMDWRQVQRFKHDAKLFY

Query:  WDEPFMYKQCSDGIIRRCVSGDEVKEILEQCHSSPYGGHFSDQRTAMRIL
        WD+PF++KQ  D I+RRCV   E+ +ILEQCH+SPYGGHF   RTA +IL
Subjt:  WDEPFMYKQCSDGIIRRCVSGDEVKEILEQCHSSPYGGHFSDQRTAMRIL

PIN02788.1 DNA-directed DNA polymerase [Handroanthus impetiginosus]6.3e-3751.06Show/hide
Query:  QEFDLEIKDKKGSENVIADHLSRLDPTSSLLEQSAISDSFSDEQIFAVEVKVVNNTPWYADITDFLVKGVTPIDMDWRQVQRFKHDAKLFYWDEPFMYKQ
        QEFDLEI+D+KG+EN IADHLS+L+  +   E + ISD+F DEQ+ A+   V ++ PWYADI + L  G+ P D+  +Q ++F  D + ++WD+PF++KQ
Subjt:  QEFDLEIKDKKGSENVIADHLSRLDPTSSLLEQSAISDSFSDEQIFAVEVKVVNNTPWYADITDFLVKGVTPIDMDWRQVQRFKHDAKLFYWDEPFMYKQ

Query:  CSDGIIRRCVSGDEVKEILEQCHSSPYGGHFSDQRTAMRIL
        C D I+RRCV   E+ ++LEQCH+SPYGGHF   +TA +IL
Subjt:  CSDGIIRRCVSGDEVKEILEQCHSSPYGGHFSDQRTAMRIL

PIN22487.1 DNA-directed DNA polymerase [Handroanthus impetiginosus]1.8e-3650.67Show/hide
Query:  RRINRVTSPQEFDLEIKDKKGSENVIADHLSRLDPTSSLLEQSAISDSFSDEQIFAVEVKVVNNTPWYADITDFLVKGVTPIDMDWRQVQRFKHDAKLFY
        R I  V   QEFDLEI+D+KG+EN IADHLSRL+  +   E + I+D+F DEQ+ A+   V +  PWYADI ++L  G+ P D+  +Q ++F  D + ++
Subjt:  RRINRVTSPQEFDLEIKDKKGSENVIADHLSRLDPTSSLLEQSAISDSFSDEQIFAVEVKVVNNTPWYADITDFLVKGVTPIDMDWRQVQRFKHDAKLFY

Query:  WDEPFMYKQCSDGIIRRCVSGDEVKEILEQCHSSPYGGHFSDQRTAMRIL
        WD+PF++KQ  D I+RRCV   E+ +ILEQCH+SPYGGHF   RTA +IL
Subjt:  WDEPFMYKQCSDGIIRRCVSGDEVKEILEQCHSSPYGGHFSDQRTAMRIL

PIN22518.1 DNA-directed DNA polymerase [Handroanthus impetiginosus]1.8e-3650.67Show/hide
Query:  RRINRVTSPQEFDLEIKDKKGSENVIADHLSRLDPTSSLLEQSAISDSFSDEQIFAVEVKVVNNTPWYADITDFLVKGVTPIDMDWRQVQRFKHDAKLFY
        R I  V   QEFDLEI+D+KG+EN IADHLSRL+  +   E + I+D+F DEQ+ A+   V +  PWYADI ++L  G+ P D+  +Q ++F  D + ++
Subjt:  RRINRVTSPQEFDLEIKDKKGSENVIADHLSRLDPTSSLLEQSAISDSFSDEQIFAVEVKVVNNTPWYADITDFLVKGVTPIDMDWRQVQRFKHDAKLFY

Query:  WDEPFMYKQCSDGIIRRCVSGDEVKEILEQCHSSPYGGHFSDQRTAMRIL
        WD+PF++KQ  D I+RRCV   E+ +ILEQCH+SPYGGHF   RTA +IL
Subjt:  WDEPFMYKQCSDGIIRRCVSGDEVKEILEQCHSSPYGGHFSDQRTAMRIL

TrEMBL top hitse value%identityAlignment
A0A2G9FWY3 Reverse transcriptase1.2e-3650.67Show/hide
Query:  RRINRVTSPQEFDLEIKDKKGSENVIADHLSRLDPTSSLLEQSAISDSFSDEQIFAVEVKVVNNTPWYADITDFLVKGVTPIDMDWRQVQRFKHDAKLFY
        R I  V   QEFDLEI+D+KG+EN IADHLSRL+  +   E + I+D+F DEQ+ A+   V ++ PWYADI ++L  G+ P D+  +Q ++F  D + ++
Subjt:  RRINRVTSPQEFDLEIKDKKGSENVIADHLSRLDPTSSLLEQSAISDSFSDEQIFAVEVKVVNNTPWYADITDFLVKGVTPIDMDWRQVQRFKHDAKLFY

Query:  WDEPFMYKQCSDGIIRRCVSGDEVKEILEQCHSSPYGGHFSDQRTAMRIL
        WD+PF++KQ  D I+RRCV   E+ +ILEQCH+SPYGGHF   RTA +IL
Subjt:  WDEPFMYKQCSDGIIRRCVSGDEVKEILEQCHSSPYGGHFSDQRTAMRIL

A0A2G9GBU9 DNA-directed DNA polymerase3.0e-3751.06Show/hide
Query:  QEFDLEIKDKKGSENVIADHLSRLDPTSSLLEQSAISDSFSDEQIFAVEVKVVNNTPWYADITDFLVKGVTPIDMDWRQVQRFKHDAKLFYWDEPFMYKQ
        QEFDLEI+D+KG+EN IADHLS+L+  +   E + ISD+F DEQ+ A+   V ++ PWYADI + L  G+ P D+  +Q ++F  D + ++WD+PF++KQ
Subjt:  QEFDLEIKDKKGSENVIADHLSRLDPTSSLLEQSAISDSFSDEQIFAVEVKVVNNTPWYADITDFLVKGVTPIDMDWRQVQRFKHDAKLFYWDEPFMYKQ

Query:  CSDGIIRRCVSGDEVKEILEQCHSSPYGGHFSDQRTAMRIL
        C D I+RRCV   E+ ++LEQCH+SPYGGHF   +TA +IL
Subjt:  CSDGIIRRCVSGDEVKEILEQCHSSPYGGHFSDQRTAMRIL

A0A2G9HYA0 Reverse transcriptase8.8e-3750.67Show/hide
Query:  RRINRVTSPQEFDLEIKDKKGSENVIADHLSRLDPTSSLLEQSAISDSFSDEQIFAVEVKVVNNTPWYADITDFLVKGVTPIDMDWRQVQRFKHDAKLFY
        R I  V   QEFDLEI+D+KG+EN IADHLSRL+  +   E + I+D+F DEQ+ A+   V +  PWYADI ++L  G+ P D+  +Q ++F  D + ++
Subjt:  RRINRVTSPQEFDLEIKDKKGSENVIADHLSRLDPTSSLLEQSAISDSFSDEQIFAVEVKVVNNTPWYADITDFLVKGVTPIDMDWRQVQRFKHDAKLFY

Query:  WDEPFMYKQCSDGIIRRCVSGDEVKEILEQCHSSPYGGHFSDQRTAMRIL
        WD+PF++KQ  D I+RRCV   E+ +ILEQCH+SPYGGHF   RTA +IL
Subjt:  WDEPFMYKQCSDGIIRRCVSGDEVKEILEQCHSSPYGGHFSDQRTAMRIL

A0A2G9HYD8 Reverse transcriptase8.8e-3750.67Show/hide
Query:  RRINRVTSPQEFDLEIKDKKGSENVIADHLSRLDPTSSLLEQSAISDSFSDEQIFAVEVKVVNNTPWYADITDFLVKGVTPIDMDWRQVQRFKHDAKLFY
        R I  V   QEFDLEI+D+KG+EN IADHLSRL+  +   E + I+D+F DEQ+ A+   V +  PWYADI ++L  G+ P D+  +Q ++F  D + ++
Subjt:  RRINRVTSPQEFDLEIKDKKGSENVIADHLSRLDPTSSLLEQSAISDSFSDEQIFAVEVKVVNNTPWYADITDFLVKGVTPIDMDWRQVQRFKHDAKLFY

Query:  WDEPFMYKQCSDGIIRRCVSGDEVKEILEQCHSSPYGGHFSDQRTAMRIL
        WD+PF++KQ  D I+RRCV   E+ +ILEQCH+SPYGGHF   RTA +IL
Subjt:  WDEPFMYKQCSDGIIRRCVSGDEVKEILEQCHSSPYGGHFSDQRTAMRIL

U5CXV9 RT_RNaseH domain-containing protein (Fragment)3.0e-3753.64Show/hide
Query:  RRINRVTSPQEFDLEIKDKKGSENVIADHLSRLDP---TSSLLEQSAISDSFSDEQIFAVEVKVVNNTPWYADITDFLVKGVTPIDMDWRQVQRFKHDAK
        R I  V   QEFDLEI+D+KG+EN +ADHLSRL+    +S L  +  I DSF DEQ+  VE       PWYADI ++LV G  P D   +Q+++F HD+K
Subjt:  RRINRVTSPQEFDLEIKDKKGSENVIADHLSRLDP---TSSLLEQSAISDSFSDEQIFAVEVKVVNNTPWYADITDFLVKGVTPIDMDWRQVQRFKHDAK

Query:  LFYWDEPFMYKQCSDGIIRRCVSGDEVKEILEQCHSSPYGGHFSDQRTAMR
         ++WDEP++YKQC D I+RRCV   EV+ ILE CHS+PYGGHF  QRTA +
Subjt:  LFYWDEPFMYKQCSDGIIRRCVSGDEVKEILEQCHSSPYGGHFSDQRTAMR

SwissProt top hitse value%identityAlignment
A0A1P8B8F8 Endo-1,4-beta-xylanase 51.5e-0475Show/hide
Query:  MRSAIDTLGSAGVPIWLTEVDVSNSPNQ
        MRSA+DTLGS G+PIWLTEVD+   PNQ
Subjt:  MRSAIDTLGSAGVPIWLTEVDVSNSPNQ

Q84WT5 Endo-1,4-beta-xylanase 5-like4.3e-0471.43Show/hide
Query:  MRSAIDTLGSAGVPIWLTEVDVSNSPNQ
        +RSA+DTLGS G+PIWLTEVD+   PNQ
Subjt:  MRSAIDTLGSAGVPIWLTEVDVSNSPNQ

Arabidopsis top hitse value%identityAlignment
AT4G33810.1 Glycosyl hydrolase superfamily protein1.0e-0575Show/hide
Query:  MRSAIDTLGSAGVPIWLTEVDVSNSPNQ
        MRSA+DTLGS G+PIWLTEVD+   PNQ
Subjt:  MRSAIDTLGSAGVPIWLTEVDVSNSPNQ

AT4G33820.1 Glycosyl hydrolase superfamily protein3.0e-0571.43Show/hide
Query:  MRSAIDTLGSAGVPIWLTEVDVSNSPNQ
        +RSA+DTLGS G+PIWLTEVD+   PNQ
Subjt:  MRSAIDTLGSAGVPIWLTEVDVSNSPNQ

AT4G33830.1 Glycosyl hydrolase family 10 protein3.3e-0448.72Show/hide
Query:  MRSAIDTLGSAGVPIWLTEVDVSNSPNQLGSAMSSLLQE
        MRSA+DTLG+ G+PIWLTE+DV    +        +L+E
Subjt:  MRSAIDTLGSAGVPIWLTEVDVSNSPNQLGSAMSSLLQE

AT4G33840.1 Glycosyl hydrolase family 10 protein4.0e-0551.28Show/hide
Query:  MRSAIDTLGSAGVPIWLTEVDVSNSPNQLGSAMSSLLQE
        MRSA+DT G+ G+PIWLTE+DV   PN   +    +L+E
Subjt:  MRSAIDTLGSAGVPIWLTEVDVSNSPNQLGSAMSSLLQE

AT4G33860.1 Glycosyl hydrolase family 10 protein6.7e-0553.85Show/hide
Query:  MRSAIDTLGSAGVPIWLTEVDVSNSPNQLGSAMSSLLQE
        MRSA+DTL + G+PIWLTEVDV   PN        +L+E
Subjt:  MRSAIDTLGSAGVPIWLTEVDVSNSPNQLGSAMSSLLQE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATCCGCCATTGATACCCTTGGTTCTGCTGGAGTACCGATTTGGCTCACCGAAGTCGACGTTTCTAACTCGCCAAACCAGTTGGGCTCGGCAATGTCGTCTCTACT
GCAAGAATCATCCCAAAAAATTATGACGCCGGAGATCCTCTGCTCTACTGCCAGACAATCACAGCATTGCCTCGTCGTCCTTGTTCGCCTCCGCCATGCCATCAAGAATT
ACCTTCGAGGTTTCATCTCCCCTATTCATTTCTTCCTTCGAGATCCGTGTTTACATGTCGTGTTGATAATGTTTACTGGCTATCTCGTTGGATATGCTTTATACCGAGCA
TTGTTTCGGCATGATCCAATCATGAGACACTTTTCATTAACAGATCGTCTAATTACAATAAACAGTCTTCATCTTCCCGTTCTAAGCTCAAGAAGAATCAATAGAGTTAC
TTCTCCTCAGGAATTCGACTTGGAGATAAAAGACAAGAAGGGATCAGAAAATGTTATTGCAGATCATTTGTCTCGTCTTGATCCAACATCGTCTTTGCTAGAGCAATCTG
CCATTTCAGATTCATTTTCAGATGAACAAATTTTTGCTGTTGAGGTAAAGGTAGTGAATAATACTCCTTGGTATGCTGATATAACAGATTTTTTGGTAAAAGGAGTAACT
CCTATTGATATGGATTGGAGGCAGGTGCAAAGGTTTAAGCATGATGCAAAATTATTTTATTGGGATGAGCCATTTATGTATAAACAGTGTTCTGATGGTATTATTCGAAG
ATGTGTTTCAGGTGATGAAGTAAAGGAAATCCTGGAGCAATGTCACTCTTCGCCGTATGGAGGTCATTTCAGCGATCAGAGGACAGCTATGAGGATTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGATCCGCCATTGATACCCTTGGTTCTGCTGGAGTACCGATTTGGCTCACCGAAGTCGACGTTTCTAACTCGCCAAACCAGTTGGGCTCGGCAATGTCGTCTCTACT
GCAAGAATCATCCCAAAAAATTATGACGCCGGAGATCCTCTGCTCTACTGCCAGACAATCACAGCATTGCCTCGTCGTCCTTGTTCGCCTCCGCCATGCCATCAAGAATT
ACCTTCGAGGTTTCATCTCCCCTATTCATTTCTTCCTTCGAGATCCGTGTTTACATGTCGTGTTGATAATGTTTACTGGCTATCTCGTTGGATATGCTTTATACCGAGCA
TTGTTTCGGCATGATCCAATCATGAGACACTTTTCATTAACAGATCGTCTAATTACAATAAACAGTCTTCATCTTCCCGTTCTAAGCTCAAGAAGAATCAATAGAGTTAC
TTCTCCTCAGGAATTCGACTTGGAGATAAAAGACAAGAAGGGATCAGAAAATGTTATTGCAGATCATTTGTCTCGTCTTGATCCAACATCGTCTTTGCTAGAGCAATCTG
CCATTTCAGATTCATTTTCAGATGAACAAATTTTTGCTGTTGAGGTAAAGGTAGTGAATAATACTCCTTGGTATGCTGATATAACAGATTTTTTGGTAAAAGGAGTAACT
CCTATTGATATGGATTGGAGGCAGGTGCAAAGGTTTAAGCATGATGCAAAATTATTTTATTGGGATGAGCCATTTATGTATAAACAGTGTTCTGATGGTATTATTCGAAG
ATGTGTTTCAGGTGATGAAGTAAAGGAAATCCTGGAGCAATGTCACTCTTCGCCGTATGGAGGTCATTTCAGCGATCAGAGGACAGCTATGAGGATTTTGTAA
Protein sequenceShow/hide protein sequence
MRSAIDTLGSAGVPIWLTEVDVSNSPNQLGSAMSSLLQESSQKIMTPEILCSTARQSQHCLVVLVRLRHAIKNYLRGFISPIHFFLRDPCLHVVLIMFTGYLVGYALYRA
LFRHDPIMRHFSLTDRLITINSLHLPVLSSRRINRVTSPQEFDLEIKDKKGSENVIADHLSRLDPTSSLLEQSAISDSFSDEQIFAVEVKVVNNTPWYADITDFLVKGVT
PIDMDWRQVQRFKHDAKLFYWDEPFMYKQCSDGIIRRCVSGDEVKEILEQCHSSPYGGHFSDQRTAMRIL