; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0005430 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005430
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr6:17492713..17493093
RNA-Seq ExpressionLag0005430
SyntenyLag0005430
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]3.8e-1547.2Show/hide
Query:  MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKDIPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEME
        M  KKA  K + +SD+YT P+  SRS+ I I+      A+A  I K + ES K  + +K+ PL+      S +     +PDVMSVMM DV  +  MAEME
Subjt:  MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKDIPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEME

Query:  RKLNLFMKAVDERDLEIAYLKNQLQ
        RK+NL MK VDERD EIA LK Q+Q
Subjt:  RKLNLFMKAVDERDLEIAYLKNQLQ

XP_031737053.1 uncharacterized protein LOC116402138 [Cucumis sativus]3.8e-1547.2Show/hide
Query:  MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKDIPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEME
        M  KKA  K + +SD+YT P+  SRS+ I I+      A+A  I K + ES K  + +K+ PL+      S +     +PDVMSVMM DV  +  MAEME
Subjt:  MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKDIPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEME

Query:  RKLNLFMKAVDERDLEIAYLKNQLQ
        RK+NL MK VDERD EIA LK Q+Q
Subjt:  RKLNLFMKAVDERDLEIAYLKNQLQ

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]3.8e-1547.2Show/hide
Query:  MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKDIPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEME
        M  KKA  K + +SD+YT P+  SRS+ I I+      A+A  I K + ES K  + +K+ PL+      S +     +PDVMSVMM DV  +  MAEME
Subjt:  MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKDIPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEME

Query:  RKLNLFMKAVDERDLEIAYLKNQLQ
        RK+NL MK VDERD EIA LK Q+Q
Subjt:  RKLNLFMKAVDERDLEIAYLKNQLQ

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]3.8e-1547.2Show/hide
Query:  MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKDIPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEME
        M  KKA  K + +SD+YT P+  SRS+ I I+      A+A  I K + ES K  + +K+ PL+      S +     +PDVMSVMM DV  +  MAEME
Subjt:  MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKDIPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEME

Query:  RKLNLFMKAVDERDLEIAYLKNQLQ
        RK+NL MK VDERD EIA LK Q+Q
Subjt:  RKLNLFMKAVDERDLEIAYLKNQLQ

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]3.8e-1547.2Show/hide
Query:  MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKDIPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEME
        M  KKA  K + +SD+YT P+  SRS+ I I+      A+A  I K + ES K  + +K+ PL+      S +     +PDVMSVMM DV  +  MAEME
Subjt:  MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKDIPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEME

Query:  RKLNLFMKAVDERDLEIAYLKNQLQ
        RK+NL MK VDERD EIA LK Q+Q
Subjt:  RKLNLFMKAVDERDLEIAYLKNQLQ

TrEMBL top hitse value%identityAlignment
A0A5D3BDK1 Ty3-gypsy retrotransposon protein4.3e-1240Show/hide
Query:  MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKDIPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEME
        M  KKA    + +SD+YT P+  +RS+ I I+E      +A  I K + ES K  + +K+ PL+      S +     +PDVMSV+M D+  +  MAEME
Subjt:  MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKDIPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEME

Query:  RKLNLFMKAVDERDLEIAYLKNQLQ
        RK+N  MK V+ERD EI  L+ Q++
Subjt:  RKLNLFMKAVDERDLEIAYLKNQLQ

A0A5D3BY54 Ty3-gypsy retrotransposon protein1.5e-1241.6Show/hide
Query:  MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKDIPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEME
        M  KKA    + +S++YT P+  SRS+ I  ++D     VA  I K + ES K  + +K+ PL+     +S +     +PDVMSVMM D+  +  MAEME
Subjt:  MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKDIPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEME

Query:  RKLNLFMKAVDERDLEIAYLKNQLQ
        RK+N  MKAV+ERD EI  L+ Q++
Subjt:  RKLNLFMKAVDERDLEIAYLKNQLQ

A0A5D3C3J8 Ty3-gypsy retrotransposon protein7.3e-1240.8Show/hide
Query:  MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKDIPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEME
        M  KKA    + ++D+YT P+  SR + I I+E      VA  I K + ES K  + +K+ PL+      S +     +PDVMSVMM D+  +  MAEME
Subjt:  MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKDIPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEME

Query:  RKLNLFMKAVDERDLEIAYLKNQLQ
        RK+N  M  V+ERD EI  L+ Q+Q
Subjt:  RKLNLFMKAVDERDLEIAYLKNQLQ

A0A5D3CVH6 Ty3-gypsy retrotransposon protein4.3e-1242.4Show/hide
Query:  MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKDIPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEME
        M  KKA  K + +SD+YT P+  SRS+ I  ++D     VA RI K + ES K  + +K+ PL+      S +     +PDVMS MMVD+     M EME
Subjt:  MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKDIPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEME

Query:  RKLNLFMKAVDERDLEIAYLKNQLQ
        RK+N  MK V+ER  EI  L++Q+Q
Subjt:  RKLNLFMKAVDERDLEIAYLKNQLQ

A0A5D3D8A2 Ty3-gypsy retrotransposon protein7.3e-1241.74Show/hide
Query:  SDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKDIPLFKFVIPTSKQPNDTL-NPDVMSVMMVDVDQDE-RMAEMERKLNLFMKAVD
        SD    P  HSRS+EI+  ED  P  VA  I + I +  K  + +K+ P+      +SK  ++ + +P++MS+M+ DVD  E RMAE+E+K+N+ MK V+
Subjt:  SDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKDIPLFKFVIPTSKQPNDTL-NPDVMSVMMVDVDQDE-RMAEMERKLNLFMKAVD

Query:  ERDLEIAYLKNQLQN
        ERD EIA+LKN +++
Subjt:  ERDLEIAYLKNQLQN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACCAAAGAAAGCTCCTGTGAAGGTTACCACATCAAGCGACTCTTACACTAGTCCTGTCATTCATAGTCGTTCCCAAGAAATTGAGATCAAGGAGGATCATACTCC
TCTTGCTGTTGCAAGCAGGATCTCAAAGCTGATTGAAGAATCATCTAAGGATAAGGTTGCAGTCAAAGACATTCCGTTGTTCAAATTTGTCATTCCAACATCTAAGCAGC
CAAACGATACACTAAATCCTGATGTGATGTCCGTCATGATGGTTGATGTAGACCAAGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTCATGAAGGCAGTT
GATGAAAGAGATCTTGAGATTGCCTATTTGAAGAACCAACTGCAAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAACCAAAGAAAGCTCCTGTGAAGGTTACCACATCAAGCGACTCTTACACTAGTCCTGTCATTCATAGTCGTTCCCAAGAAATTGAGATCAAGGAGGATCATACTCC
TCTTGCTGTTGCAAGCAGGATCTCAAAGCTGATTGAAGAATCATCTAAGGATAAGGTTGCAGTCAAAGACATTCCGTTGTTCAAATTTGTCATTCCAACATCTAAGCAGC
CAAACGATACACTAAATCCTGATGTGATGTCCGTCATGATGGTTGATGTAGACCAAGATGAAAGAATGGCAGAGATGGAAAGAAAACTCAATCTCTTCATGAAGGCAGTT
GATGAAAGAGATCTTGAGATTGCCTATTTGAAGAACCAACTGCAAAATTGA
Protein sequenceShow/hide protein sequence
MEPKKAPVKVTTSSDSYTSPVIHSRSQEIEIKEDHTPLAVASRISKLIEESSKDKVAVKDIPLFKFVIPTSKQPNDTLNPDVMSVMMVDVDQDERMAEMERKLNLFMKAV
DERDLEIAYLKNQLQN