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Lag0005437 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005437
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr6:17705767..17706291
RNA-Seq ExpressionLag0005437
SyntenyLag0005437
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]6.2e-2446.24Show/hide
Query:  MASKKAPAKVKTSSDSYTGLVTCSRSQGIEIKEDHTPLAIVTCSRSQVIEIKEDHTPLAIDSRISKLIEESSKDKVADKDNPLFESVTPTSEQPKDALNS
        MASKKA +K   +SD+YTG +T SRS+GI                     I+      AI   I K + ES K  +  K+NPL+      S +     + 
Subjt:  MASKKAPAKVKTSSDSYTGLVTCSRSQGIEIKEDHTPLAIVTCSRSQVIEIKEDHTPLAIDSRISKLIEESSKDKVADKDNPLFESVTPTSEQPKDALNS

Query:  HVMFVMMADVNQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQSRKTTESSQTPAVGKSDKGKAIVHEDQP
         VM VMMADV  +  MAEMERK+NLLMK +DERDHEIA LK Q+Q+R+T ESSQTP V   DKGK +V E+QP
Subjt:  HVMFVMMADVNQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQSRKTTESSQTPAVGKSDKGKAIVHEDQP

XP_031737053.1 uncharacterized protein LOC116402138 [Cucumis sativus]6.2e-2446.24Show/hide
Query:  MASKKAPAKVKTSSDSYTGLVTCSRSQGIEIKEDHTPLAIVTCSRSQVIEIKEDHTPLAIDSRISKLIEESSKDKVADKDNPLFESVTPTSEQPKDALNS
        MASKKA +K   +SD+YTG +T SRS+GI                     I+      AI   I K + ES K  +  K+NPL+      S +     + 
Subjt:  MASKKAPAKVKTSSDSYTGLVTCSRSQGIEIKEDHTPLAIVTCSRSQVIEIKEDHTPLAIDSRISKLIEESSKDKVADKDNPLFESVTPTSEQPKDALNS

Query:  HVMFVMMADVNQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQSRKTTESSQTPAVGKSDKGKAIVHEDQP
         VM VMMADV  +  MAEMERK+NLLMK +DERDHEIA LK Q+Q+R+T ESSQTP V   DKGK +V E+QP
Subjt:  HVMFVMMADVNQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQSRKTTESSQTPAVGKSDKGKAIVHEDQP

XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]6.2e-2446.24Show/hide
Query:  MASKKAPAKVKTSSDSYTGLVTCSRSQGIEIKEDHTPLAIVTCSRSQVIEIKEDHTPLAIDSRISKLIEESSKDKVADKDNPLFESVTPTSEQPKDALNS
        MASKKA +K   +SD+YTG +T SRS+GI                     I+      AI   I K + ES K  +  K+NPL+      S +     + 
Subjt:  MASKKAPAKVKTSSDSYTGLVTCSRSQGIEIKEDHTPLAIVTCSRSQVIEIKEDHTPLAIDSRISKLIEESSKDKVADKDNPLFESVTPTSEQPKDALNS

Query:  HVMFVMMADVNQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQSRKTTESSQTPAVGKSDKGKAIVHEDQP
         VM VMMADV  +  MAEMERK+NLLMK +DERDHEIA LK Q+Q+R+T ESSQTP V   DKGK +V E+QP
Subjt:  HVMFVMMADVNQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQSRKTTESSQTPAVGKSDKGKAIVHEDQP

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]6.2e-2446.24Show/hide
Query:  MASKKAPAKVKTSSDSYTGLVTCSRSQGIEIKEDHTPLAIVTCSRSQVIEIKEDHTPLAIDSRISKLIEESSKDKVADKDNPLFESVTPTSEQPKDALNS
        MASKKA +K   +SD+YTG +T SRS+GI                     I+      AI   I K + ES K  +  K+NPL+      S +     + 
Subjt:  MASKKAPAKVKTSSDSYTGLVTCSRSQGIEIKEDHTPLAIVTCSRSQVIEIKEDHTPLAIDSRISKLIEESSKDKVADKDNPLFESVTPTSEQPKDALNS

Query:  HVMFVMMADVNQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQSRKTTESSQTPAVGKSDKGKAIVHEDQP
         VM VMMADV  +  MAEMERK+NLLMK +DERDHEIA LK Q+Q+R+T ESSQTP V   DKGK +V E+QP
Subjt:  HVMFVMMADVNQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQSRKTTESSQTPAVGKSDKGKAIVHEDQP

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]6.2e-2446.24Show/hide
Query:  MASKKAPAKVKTSSDSYTGLVTCSRSQGIEIKEDHTPLAIVTCSRSQVIEIKEDHTPLAIDSRISKLIEESSKDKVADKDNPLFESVTPTSEQPKDALNS
        MASKKA +K   +SD+YTG +T SRS+GI                     I+      AI   I K + ES K  +  K+NPL+      S +     + 
Subjt:  MASKKAPAKVKTSSDSYTGLVTCSRSQGIEIKEDHTPLAIVTCSRSQVIEIKEDHTPLAIDSRISKLIEESSKDKVADKDNPLFESVTPTSEQPKDALNS

Query:  HVMFVMMADVNQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQSRKTTESSQTPAVGKSDKGKAIVHEDQP
         VM VMMADV  +  MAEMERK+NLLMK +DERDHEIA LK Q+Q+R+T ESSQTP V   DKGK +V E+QP
Subjt:  HVMFVMMADVNQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQSRKTTESSQTPAVGKSDKGKAIVHEDQP

TrEMBL top hitse value%identityAlignment
A0A5A7TFN2 Ty3-gypsy retrotransposon protein9.1e-2139.88Show/hide
Query:  MASKKAPAKVKTSSDSYTGLVTCSRSQGIEIKEDHTPLAIVTCSRSQVIEIKEDHTPLAIDSRISKLIEESSKDKVADKDNPLFESVTPTSEQPKDALNS
        MASKKA +    +SD+YTG +T SRS+GI  ++D                         +  RI K + ES K  +  K+N L+++    S + K   + 
Subjt:  MASKKAPAKVKTSSDSYTGLVTCSRSQGIEIKEDHTPLAIVTCSRSQVIEIKEDHTPLAIDSRISKLIEESSKDKVADKDNPLFESVTPTSEQPKDALNS

Query:  HVMFVMMADVNQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQSRKTTESSQTPAVGKSDKGKAIVHEDQP
         V  VMMAD+  +  M EMERK+N LMKA++ERDHEI   + Q+++R+T ESSQTP V  +DKGK ++ E+QP
Subjt:  HVMFVMMADVNQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQSRKTTESSQTPAVGKSDKGKAIVHEDQP

A0A5A7UF60 Ty3-gypsy retrotransposon protein1.1e-2142.2Show/hide
Query:  MASKKAPAKVKTSSDSYTGLVTCSRSQGIEIKEDHTPLAIVTCSRSQVIEIKEDHTPLAIDSRISKLIEESSKDKVADKDNPLFESVTPTSEQPKDALNS
        MASKK  +    +SD+YTG +T SRS+GI  ++D           S V++             I K + ES K  +  K NPL+++    S   K   + 
Subjt:  MASKKAPAKVKTSSDSYTGLVTCSRSQGIEIKEDHTPLAIVTCSRSQVIEIKEDHTPLAIDSRISKLIEESSKDKVADKDNPLFESVTPTSEQPKDALNS

Query:  HVMFVMMADVNQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQSRKTTESSQTPAVGKSDKGKAIVHEDQP
         VM VMMAD+  +  MAEME+K+N LMKA++ERDHEI  L+ Q+++R+T ESSQTP V  +DKGK +V E+QP
Subjt:  HVMFVMMADVNQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQSRKTTESSQTPAVGKSDKGKAIVHEDQP

A0A5D3BDK1 Ty3-gypsy retrotransposon protein1.8e-2141.04Show/hide
Query:  MASKKAPAKVKTSSDSYTGLVTCSRSQGIEIKEDHTPLAIVTCSRSQVIEIKEDHTPLAIDSRISKLIEESSKDKVADKDNPLFESVTPTSEQPKDALNS
        MASKKA +    +SD+YTG +T +RS+GI                     I+E      I   I K + ES K  +  K+NPL+++    S + K   + 
Subjt:  MASKKAPAKVKTSSDSYTGLVTCSRSQGIEIKEDHTPLAIVTCSRSQVIEIKEDHTPLAIDSRISKLIEESSKDKVADKDNPLFESVTPTSEQPKDALNS

Query:  HVMFVMMADVNQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQSRKTTESSQTPAVGKSDKGKAIVHEDQP
         VM V+M D+  +  MAEMERK+N LMK ++ERDHEI  L+ Q+++RKT ES+QTP V  +DKGK  V E+QP
Subjt:  HVMFVMMADVNQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQSRKTTESSQTPAVGKSDKGKAIVHEDQP

A0A5D3BY54 Ty3-gypsy retrotransposon protein1.7e-2241.62Show/hide
Query:  MASKKAPAKVKTSSDSYTGLVTCSRSQGIEIKEDHTPLAIVTCSRSQVIEIKEDHTPLAIDSRISKLIEESSKDKVADKDNPLFESVTPTSEQPKDALNS
        MASKKA +    +S++YTG +T SRS+GI  ++D                         +   I K + ES K  +  K+NPL+++   +S + K   + 
Subjt:  MASKKAPAKVKTSSDSYTGLVTCSRSQGIEIKEDHTPLAIVTCSRSQVIEIKEDHTPLAIDSRISKLIEESSKDKVADKDNPLFESVTPTSEQPKDALNS

Query:  HVMFVMMADVNQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQSRKTTESSQTPAVGKSDKGKAIVHEDQP
         VM VMMAD+  +  MAEMERK+N LMKA++ERDHEI  L+ Q+++R+T ESSQTP V  +DKGK +V E+QP
Subjt:  HVMFVMMADVNQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQSRKTTESSQTPAVGKSDKGKAIVHEDQP

A0A5D3CD35 Ty3-gypsy retrotransposon protein6.9e-2139.31Show/hide
Query:  MASKKAPAKVKTSSDSYTGLVTCSRSQGIEIKEDHTPLAIVTCSRSQVIEIKEDHTPLAIDSRISKLIEESSKDKVADKDNPLFESVTPTSEQPKDALNS
        MASKK  +    +SD+YTG +T S S+GI  ++D                         +   I K + ES K  +  K+NPL+++    S + K   + 
Subjt:  MASKKAPAKVKTSSDSYTGLVTCSRSQGIEIKEDHTPLAIVTCSRSQVIEIKEDHTPLAIDSRISKLIEESSKDKVADKDNPLFESVTPTSEQPKDALNS

Query:  HVMFVMMADVNQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQSRKTTESSQTPAVGKSDKGKAIVHEDQP
         VMFVMMAD+  +  MA+ME+K+N LMKA++E DHEI  L+ Q+++R+T ESSQTP V  +DKGK +V ++QP
Subjt:  HVMFVMMADVNQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQSRKTTESSQTPAVGKSDKGKAIVHEDQP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGCATCAAAGAAAGCTCCCGCAAAGGTTAAGACATCAAGCGACTCTTACACAGGTCTTGTCACTTGTAGTCGTTCCCAAGGAATTGAGATCAAGGAGGATCACAC
TCCTCTCGCTATTGTCACTTGTAGTCGTTCCCAAGTAATTGAGATCAAGGAGGATCACACTCCTCTCGCTATTGATAGTAGGATCTCAAAATTGATTGAAGAATCCTCTA
AGGACAAGGTTGCAGACAAAGACAACCCGCTGTTCGAATCTGTCACTCCAACATCTGAGCAGCCAAAGGATGCACTAAATTCTCATGTGATGTTCGTCATGATGGCTGAT
GTAAACCAAGATGAAAGGATGGCAGAGATGGAAAGAAAACTTAATCTCTTAATGAAGGCAATTGATGAAAGAGATCATGAAATTGCCTATTTGAAGAACCAGCTGCAAAG
TCGAAAAACTACTGAATCTAGCCAGACCCCTGCTGTAGGAAAAAGTGATAAGGGGAAGGCTATTGTCCATGAGGACCAGCCATAA
mRNA sequenceShow/hide mRNA sequence
ATGATGGCATCAAAGAAAGCTCCCGCAAAGGTTAAGACATCAAGCGACTCTTACACAGGTCTTGTCACTTGTAGTCGTTCCCAAGGAATTGAGATCAAGGAGGATCACAC
TCCTCTCGCTATTGTCACTTGTAGTCGTTCCCAAGTAATTGAGATCAAGGAGGATCACACTCCTCTCGCTATTGATAGTAGGATCTCAAAATTGATTGAAGAATCCTCTA
AGGACAAGGTTGCAGACAAAGACAACCCGCTGTTCGAATCTGTCACTCCAACATCTGAGCAGCCAAAGGATGCACTAAATTCTCATGTGATGTTCGTCATGATGGCTGAT
GTAAACCAAGATGAAAGGATGGCAGAGATGGAAAGAAAACTTAATCTCTTAATGAAGGCAATTGATGAAAGAGATCATGAAATTGCCTATTTGAAGAACCAGCTGCAAAG
TCGAAAAACTACTGAATCTAGCCAGACCCCTGCTGTAGGAAAAAGTGATAAGGGGAAGGCTATTGTCCATGAGGACCAGCCATAA
Protein sequenceShow/hide protein sequence
MMASKKAPAKVKTSSDSYTGLVTCSRSQGIEIKEDHTPLAIVTCSRSQVIEIKEDHTPLAIDSRISKLIEESSKDKVADKDNPLFESVTPTSEQPKDALNSHVMFVMMAD
VNQDERMAEMERKLNLLMKAIDERDHEIAYLKNQLQSRKTTESSQTPAVGKSDKGKAIVHEDQP