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Lag0005452 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005452
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr6:18140537..18141388
RNA-Seq ExpressionLag0005452
SyntenyLag0005452
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7819670.1 uncharacterized protein G2W53_025125 [Senna tora]1.6e-1132.12Show/hide
Query:  AASRKSQTNGIAAIIRNNKGEAMLTMVRPISFVHDVDSLEVMAVRDDLLMAREARLLRLEMETDSARVAALIRSDLEDLSEVGALVKEIKYISAALDFCS
        A+ R+   + +  IIRN+ G  ++ M +       VD+LE +AV + L++A+   +L +E+E DSA+V  L+     D S +G ++++I  +S+  +F S
Subjt:  AASRKSQTNGIAAIIRNNKGEAMLTMVRPISFVHDVDSLEVMAVRDDLLMAREARLLRLEMETDSARVAALIRSDLEDLSEVGALVKEIKYISAALDFCS

Query:  VSWCRRSANRVAHVAA----KLAMNNSVEGIWLEDVP
          W RR  N++AH+ A    +   +N    +WLED P
Subjt:  VSWCRRSANRVAHVAA----KLAMNNSVEGIWLEDVP

PRQ54504.1 putative ribonuclease H-like domain-containing protein [Rosa chinensis]4.3e-1235.56Show/hide
Query:  DAAASRKSQTNGIAAIIRNNKGEAMLTMVRPISFVHDVDSLEVMAVRDDLLMAREARLLRLEMETDSARVAALIRSDLEDLSEVGALVKEIKYISAALDF
        D A    +   GI A+IR+  G  +  + RP SFV     +E+ A+R  LL+     ++ +++ETD A V   ++ D EDLSEVG ++++ K    A+  
Subjt:  DAAASRKSQTNGIAAIIRNNKGEAMLTMVRPISFVHDVDSLEVMAVRDDLLMAREARLLRLEMETDSARVAALIRSDLEDLSEVGALVKEIKYISAALDF

Query:  CSVSWCRRSANRVAHVAAKLAMNNSVEGIWLEDVP
         S+    R AN VAH  A LA +  V+  WLE+ P
Subjt:  CSVSWCRRSANRVAHVAAKLAMNNSVEGIWLEDVP

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]2.5e-1238.13Show/hide
Query:  VTRDAAASRKSQTNGIAAIIRNNKGEAMLTMVRPISFVHDVDSLEVMAVRDDLLMAREARLLRLEMETDSARVAALIRSDLEDLSEVGALVKEIK-YISA
        V  DAA  ++S   G+  IIR++ G   LT +R ++   DVD +E  AV + +L+A EA  +R ++ETDS R+  L+ +D  D SEVG L   IK ++S+
Subjt:  VTRDAAASRKSQTNGIAAIIRNNKGEAMLTMVRPISFVHDVDSLEVMAVRDDLLMAREARLLRLEMETDSARVAALIRSDLEDLSEVGALVKEIK-YISA

Query:  ALDFCSVSWCRRSANRVAHVAAKLAMNNSVEGIWLEDVP
          +  S S+  R+ N  AH+ A+LA+ +    IW+E+ P
Subjt:  ALDFCSVSWCRRSANRVAHVAAKLAMNNSVEGIWLEDVP

XP_023880084.1 uncharacterized protein LOC111992454 [Quercus suber]2.8e-1138.4Show/hide
Query:  NGIAAIIRNNKGEAMLTMVRPISFVHDVDSLEVMAVRDDLLMAREARLLRLEMETDSARVAALIRSDLEDLSEVGALVKEIKYISAALDFCSVSWCRRSA
        +G+ AIIRN +GE M  +     FV D +  E +A R  L  A +  +L L +E D+A V   + S+  D S +G ++++I  + + L + SVS  +RSA
Subjt:  NGIAAIIRNNKGEAMLTMVRPISFVHDVDSLEVMAVRDDLLMAREARLLRLEMETDSARVAALIRSDLEDLSEVGALVKEIKYISAALDFCSVSWCRRSA

Query:  NRVAHVAAKLAMNNSVEGIWLEDVP
        N VAH  A+ A N S E +W+ED P
Subjt:  NRVAHVAAKLAMNNSVEGIWLEDVP

XP_023920513.1 uncharacterized protein LOC112032047 [Quercus suber]1.6e-1137.3Show/hide
Query:  TNGIAAIIRNNKGEAMLTMVRPISFVHDVDSLEVMAVRDDLLMAREARLLRLEMETDSARVAALIRSDLEDLSEVGALVKEIKYISAALDFCSVSWCRRS
        ++G+ AIIRN +GE M  +     FV D +  E +A R  L  A +  +  L +E D+  V   + S+  D S +G ++++I  + + L +CSVS  +RS
Subjt:  TNGIAAIIRNNKGEAMLTMVRPISFVHDVDSLEVMAVRDDLLMAREARLLRLEMETDSARVAALIRSDLEDLSEVGALVKEIKYISAALDFCSVSWCRRS

Query:  ANRVAHVAAKLAMNNSVEGIWLEDVP
        AN VAH  A+ A N S E +W+ED P
Subjt:  ANRVAHVAAKLAMNNSVEGIWLEDVP

TrEMBL top hitse value%identityAlignment
A0A2N9F6L9 Reverse transcriptase domain-containing protein8.8e-1130.77Show/hide
Query:  KMHEFGVTRDAAASRKSQTNGIAAIIRNNKGEAMLTMVRPISFVHDVDSLEVMAVRDDLLMAREARLLRLEMETDSARVAALIRSDLEDLSEVGALVKEI
        + H   +  D A   ++   GI  I+R+  G  + ++V+ + F H V S+E  A +  +  A E  L   E E DS  V   +      L+  G L+ + 
Subjt:  KMHEFGVTRDAAASRKSQTNGIAAIIRNNKGEAMLTMVRPISFVHDVDSLEVMAVRDDLLMAREARLLRLEMETDSARVAALIRSDLEDLSEVGALVKEI

Query:  KYISAALDFCSVSWCRRSANRVAH-VAAKLAMNNSVEGIWLEDVPAGLETEYITKV
        K I+  L  CS +  +R  NR+AH +A K    NS+E +W+E VP  LE  Y++ +
Subjt:  KYISAALDFCSVSWCRRSANRVAH-VAAKLAMNNSVEGIWLEDVPAGLETEYITKV

A0A2N9HRK6 Uncharacterized protein2.3e-1128.67Show/hide
Query:  FGVTRDAAASRKSQTNGIAAIIRNNKGEAMLTMVRPISFVHDVDSLEVMAVRDDLLMAREARLLRLEMETDSARVAALIRSDLEDLSEVGALVKEIKYIS
        F    D A  +++   GI  I+RN +G+ M ++V+ + +   V+S+E  A R  +    E  L   E E DS  V A + S   +L+  G L++++K ++
Subjt:  FGVTRDAAASRKSQTNGIAAIIRNNKGEAMLTMVRPISFVHDVDSLEVMAVRDDLLMAREARLLRLEMETDSARVAALIRSDLEDLSEVGALVKEIKYIS

Query:  AALDFCSVSWCRRSANRVAHVAAKLAMNNSVEGIWLEDVPAGLETEYITK
          L     +  +R  N +AH  A++A+N +   +W+EDVP   +  Y+++
Subjt:  AALDFCSVSWCRRSANRVAHVAAKLAMNNSVEGIWLEDVPAGLETEYITK

A0A2N9IQU0 Uncharacterized protein1.0e-1128.85Show/hide
Query:  NKMHEFGVTRDAAASRKSQTNGIAAIIRNNKGEAMLTMVRPISFVHDVDSLEVMAVRDDLLMAREARLLRLEMETDSARVAALIRSDLEDLSEVGALVKE
        ++ ++F V  D A  +++   GI  I+RN  GE M T+V+ + +   V+S+E  A +  +    E  L   E E DS  V A + S     S+ G L+++
Subjt:  NKMHEFGVTRDAAASRKSQTNGIAAIIRNNKGEAMLTMVRPISFVHDVDSLEVMAVRDDLLMAREARLLRLEMETDSARVAALIRSDLEDLSEVGALVKE

Query:  IKYISAALDFCSVSWCRRSANRVAHVAAKLAMNNSVEGIWLEDVPAGLETEYITKV
         K +++AL     +  +   N +AH  A++A+      +W+EDVP   +  Y+ K+
Subjt:  IKYISAALDFCSVSWCRRSANRVAHVAAKLAMNNSVEGIWLEDVPAGLETEYITKV

A0A2P6S796 Putative ribonuclease H-like domain-containing protein2.1e-1235.56Show/hide
Query:  DAAASRKSQTNGIAAIIRNNKGEAMLTMVRPISFVHDVDSLEVMAVRDDLLMAREARLLRLEMETDSARVAALIRSDLEDLSEVGALVKEIKYISAALDF
        D A    +   GI A+IR+  G  +  + RP SFV     +E+ A+R  LL+     ++ +++ETD A V   ++ D EDLSEVG ++++ K    A+  
Subjt:  DAAASRKSQTNGIAAIIRNNKGEAMLTMVRPISFVHDVDSLEVMAVRDDLLMAREARLLRLEMETDSARVAALIRSDLEDLSEVGALVKEIKYISAALDF

Query:  CSVSWCRRSANRVAHVAAKLAMNNSVEGIWLEDVP
         S+    R AN VAH  A LA +  V+  WLE+ P
Subjt:  CSVSWCRRSANRVAHVAAKLAMNNSVEGIWLEDVP

A0A6J1DBJ7 uncharacterized protein LOC1110189731.2e-1238.13Show/hide
Query:  VTRDAAASRKSQTNGIAAIIRNNKGEAMLTMVRPISFVHDVDSLEVMAVRDDLLMAREARLLRLEMETDSARVAALIRSDLEDLSEVGALVKEIK-YISA
        V  DAA  ++S   G+  IIR++ G   LT +R ++   DVD +E  AV + +L+A EA  +R ++ETDS R+  L+ +D  D SEVG L   IK ++S+
Subjt:  VTRDAAASRKSQTNGIAAIIRNNKGEAMLTMVRPISFVHDVDSLEVMAVRDDLLMAREARLLRLEMETDSARVAALIRSDLEDLSEVGALVKEIK-YISA

Query:  ALDFCSVSWCRRSANRVAHVAAKLAMNNSVEGIWLEDVP
          +  S S+  R+ N  AH+ A+LA+ +    IW+E+ P
Subjt:  ALDFCSVSWCRRSANRVAHVAAKLAMNNSVEGIWLEDVP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAGTTCGTGTAAAGAAACAACCAACAAGATGCATGAATTCGGTGTTACAAGAGACGCGGCTGCAAGCAGGAAATCCCAAACAAATGGTATTGCCGCAATAATCAG
GAACAATAAAGGAGAGGCGATGCTTACCATGGTGAGGCCGATTTCCTTTGTTCATGACGTTGATTCCCTTGAAGTCATGGCGGTGAGAGACGACTTGTTGATGGCGAGGG
AGGCTAGACTGTTGAGACTTGAAATGGAGACAGATTCAGCTCGAGTAGCGGCCCTCATTCGTTCGGATCTGGAAGATTTGTCGGAGGTTGGAGCGTTGGTGAAGGAGATC
AAATATATCTCTGCGGCCCTGGACTTCTGTTCTGTTTCGTGGTGCCGTCGCTCTGCAAATAGAGTGGCCCATGTTGCGGCCAAGTTGGCGATGAACAACAGTGTTGAAGG
AATTTGGCTGGAGGACGTTCCAGCGGGGCTAGAAACCGAGTACATCACAAAGGTTTTAGACATCCCTTCTTGCTCTTTGAGGGATTCTGTCCGTGTGGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGAGTTCGTGTAAAGAAACAACCAACAAGATGCATGAATTCGGTGTTACAAGAGACGCGGCTGCAAGCAGGAAATCCCAAACAAATGGTATTGCCGCAATAATCAG
GAACAATAAAGGAGAGGCGATGCTTACCATGGTGAGGCCGATTTCCTTTGTTCATGACGTTGATTCCCTTGAAGTCATGGCGGTGAGAGACGACTTGTTGATGGCGAGGG
AGGCTAGACTGTTGAGACTTGAAATGGAGACAGATTCAGCTCGAGTAGCGGCCCTCATTCGTTCGGATCTGGAAGATTTGTCGGAGGTTGGAGCGTTGGTGAAGGAGATC
AAATATATCTCTGCGGCCCTGGACTTCTGTTCTGTTTCGTGGTGCCGTCGCTCTGCAAATAGAGTGGCCCATGTTGCGGCCAAGTTGGCGATGAACAACAGTGTTGAAGG
AATTTGGCTGGAGGACGTTCCAGCGGGGCTAGAAACCGAGTACATCACAAAGGTTTTAGACATCCCTTCTTGCTCTTTGAGGGATTCTGTCCGTGTGGCTTAG
Protein sequenceShow/hide protein sequence
MSSSCKETTNKMHEFGVTRDAAASRKSQTNGIAAIIRNNKGEAMLTMVRPISFVHDVDSLEVMAVRDDLLMAREARLLRLEMETDSARVAALIRSDLEDLSEVGALVKEI
KYISAALDFCSVSWCRRSANRVAHVAAKLAMNNSVEGIWLEDVPAGLETEYITKVLDIPSCSLRDSVRVA