CuGenDBv2

Gene ID	Lag0005457
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Genome location	chr6:18171601..18175732
RNA-Seq Expression	Lag0005457
Synteny	Lag0005457
Gene Ontology terms	GO:0090304 - nucleic acid metabolic process (biological process) GO:0003824 - catalytic activity (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain

Homology

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GenBank top hits

e value

%identity

Alignment

BBN69746.1 VIRB2-interacting protein 2 [Prunus dulcis]

3.1e-33

48.37

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Query:  INANVNETYIFLIPKKLEARSVADFRLISLTTCLYKIIARVLSEHLKK--------------EGRQILDVSPMANELIDEWKRKNDKGAALKLNIEKTFD
        INA  NET+I LIPKK E+  V+DFR ISL T LYK++++VL+  L++              +GRQILD + +ANE+++E +R N  G   K+++EK +D
Subjt:  INANVNETYIFLIPKKLEARSVADFRLISLTTCLYKIIARVLSEHLKK--------------EGRQILDVSPMANELIDEWKRKNDKGAALKLNIEKTFD

Query:  KVDYSFRDNILSVKGLGQKWRSWIKGCISPANFSIIINGRPRGEIIATRGLCQ
         V++ F D +L  KG G +WRSWI+GC+  ANFS++INGRPRG+  A+RGL Q
Subjt:  KVDYSFRDNILSVKGLGQKWRSWIKGCISPANFSIIINGRPRGEIIATRGLCQ

VVA13439.1 Hypothetical predicted protein, partial [Prunus dulcis]

3.1e-33

48.37

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Query:  INANVNETYIFLIPKKLEARSVADFRLISLTTCLYKIIARVLSEHLKK--------------EGRQILDVSPMANELIDEWKRKNDKGAALKLNIEKTFD
        INA  NET+I LIPKK E+  V+DFR ISL T LYK++++VL+  L++              +GRQILD + +ANE+++E +R N  G   K+++EK +D
Subjt:  INANVNETYIFLIPKKLEARSVADFRLISLTTCLYKIIARVLSEHLKK--------------EGRQILDVSPMANELIDEWKRKNDKGAALKLNIEKTFD

Query:  KVDYSFRDNILSVKGLGQKWRSWIKGCISPANFSIIINGRPRGEIIATRGLCQ
         V++ F D +L  KG G +WRSWI+GC+  ANFS++INGRPRG+  A+RGL Q
Subjt:  KVDYSFRDNILSVKGLGQKWRSWIKGCISPANFSIIINGRPRGEIIATRGLCQ

VVA21938.1 Hypothetical predicted protein, partial [Prunus dulcis]

3.1e-33

48.37

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Query:  INANVNETYIFLIPKKLEARSVADFRLISLTTCLYKIIARVLSEHLKK--------------EGRQILDVSPMANELIDEWKRKNDKGAALKLNIEKTFD
        INA  NET+I LIPKK E+  V+DFR ISL T LYK++++VL+  L++              +GRQILD + +ANE+++E +R N  G   K+++EK +D
Subjt:  INANVNETYIFLIPKKLEARSVADFRLISLTTCLYKIIARVLSEHLKK--------------EGRQILDVSPMANELIDEWKRKNDKGAALKLNIEKTFD

Query:  KVDYSFRDNILSVKGLGQKWRSWIKGCISPANFSIIINGRPRGEIIATRGLCQ
         V++ F D +L  KG G +WRSWI+GC+  ANFS++INGRPRG+  A+RGL Q
Subjt:  KVDYSFRDNILSVKGLGQKWRSWIKGCISPANFSIIINGRPRGEIIATRGLCQ

VVA25489.1 Hypothetical predicted protein, partial [Prunus dulcis]

3.1e-33

48.37

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Query:  INANVNETYIFLIPKKLEARSVADFRLISLTTCLYKIIARVLSEHLKK--------------EGRQILDVSPMANELIDEWKRKNDKGAALKLNIEKTFD
        INA  NET+I LIPKK E+  V+DFR ISL T LYK++++VL+  L++              +GRQILD + +ANE+++E +R N  G   K+++EK +D
Subjt:  INANVNETYIFLIPKKLEARSVADFRLISLTTCLYKIIARVLSEHLKK--------------EGRQILDVSPMANELIDEWKRKNDKGAALKLNIEKTFD

Query:  KVDYSFRDNILSVKGLGQKWRSWIKGCISPANFSIIINGRPRGEIIATRGLCQ
         V++ F D +L  KG G +WRSWI+GC+  ANFS++INGRPRG+  A+RGL Q
Subjt:  KVDYSFRDNILSVKGLGQKWRSWIKGCISPANFSIIINGRPRGEIIATRGLCQ

VVA39726.1 Hypothetical predicted protein, partial [Prunus dulcis]

3.1e-33

48.37

Show/hide

Query:  INANVNETYIFLIPKKLEARSVADFRLISLTTCLYKIIARVLSEHLKK--------------EGRQILDVSPMANELIDEWKRKNDKGAALKLNIEKTFD
        INA  NET+I LIPKK E+  V+DFR ISL T LYK++++VL+  L++              +GRQILD + +ANE+++E +R N  G   K+++EK +D
Subjt:  INANVNETYIFLIPKKLEARSVADFRLISLTTCLYKIIARVLSEHLKK--------------EGRQILDVSPMANELIDEWKRKNDKGAALKLNIEKTFD

Query:  KVDYSFRDNILSVKGLGQKWRSWIKGCISPANFSIIINGRPRGEIIATRGLCQ
         V++ F D +L  KG G +WRSWI+GC+  ANFS++INGRPRG+  A+RGL Q
Subjt:  KVDYSFRDNILSVKGLGQKWRSWIKGCISPANFSIIINGRPRGEIIATRGLCQ

TrEMBL top hits

e value

%identity

Alignment

A0A4Y1R3V4 VIRB2-interacting protein 2

1.5e-33

48.37

Show/hide

Query:  INANVNETYIFLIPKKLEARSVADFRLISLTTCLYKIIARVLSEHLKK--------------EGRQILDVSPMANELIDEWKRKNDKGAALKLNIEKTFD
        INA  NET+I LIPKK E+  V+DFR ISL T LYK++++VL+  L++              +GRQILD + +ANE+++E +R N  G   K+++EK +D
Subjt:  INANVNETYIFLIPKKLEARSVADFRLISLTTCLYKIIARVLSEHLKK--------------EGRQILDVSPMANELIDEWKRKNDKGAALKLNIEKTFD

Query:  KVDYSFRDNILSVKGLGQKWRSWIKGCISPANFSIIINGRPRGEIIATRGLCQ
         V++ F D +L  KG G +WRSWI+GC+  ANFS++INGRPRG+  A+RGL Q
Subjt:  KVDYSFRDNILSVKGLGQKWRSWIKGCISPANFSIIINGRPRGEIIATRGLCQ

A0A5E4FED8 Reverse transcriptase domain-containing protein (Fragment)

1.5e-33

48.37

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Query:  INANVNETYIFLIPKKLEARSVADFRLISLTTCLYKIIARVLSEHLKK--------------EGRQILDVSPMANELIDEWKRKNDKGAALKLNIEKTFD
        INA  NET+I LIPKK E+  V+DFR ISL T LYK++++VL+  L++              +GRQILD + +ANE+++E +R N  G   K+++EK +D
Subjt:  INANVNETYIFLIPKKLEARSVADFRLISLTTCLYKIIARVLSEHLKK--------------EGRQILDVSPMANELIDEWKRKNDKGAALKLNIEKTFD

Query:  KVDYSFRDNILSVKGLGQKWRSWIKGCISPANFSIIINGRPRGEIIATRGLCQ
         V++ F D +L  KG G +WRSWI+GC+  ANFS++INGRPRG+  A+RGL Q
Subjt:  KVDYSFRDNILSVKGLGQKWRSWIKGCISPANFSIIINGRPRGEIIATRGLCQ

A0A5E4GJ11 Reverse transcriptase domain-containing protein (Fragment)

1.5e-33

48.37

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Query:  INANVNETYIFLIPKKLEARSVADFRLISLTTCLYKIIARVLSEHLKK--------------EGRQILDVSPMANELIDEWKRKNDKGAALKLNIEKTFD
        INA  NET+I LIPKK E+  V+DFR ISL T LYK++++VL+  L++              +GRQILD + +ANE+++E +R N  G   K+++EK +D
Subjt:  INANVNETYIFLIPKKLEARSVADFRLISLTTCLYKIIARVLSEHLKK--------------EGRQILDVSPMANELIDEWKRKNDKGAALKLNIEKTFD

Query:  KVDYSFRDNILSVKGLGQKWRSWIKGCISPANFSIIINGRPRGEIIATRGLCQ
         V++ F D +L  KG G +WRSWI+GC+  ANFS++INGRPRG+  A+RGL Q
Subjt:  KVDYSFRDNILSVKGLGQKWRSWIKGCISPANFSIIINGRPRGEIIATRGLCQ

A0A5H2XKI7 VIRB2-interacting protein 2

1.5e-33

48.37

Show/hide

Query:  INANVNETYIFLIPKKLEARSVADFRLISLTTCLYKIIARVLSEHLKK--------------EGRQILDVSPMANELIDEWKRKNDKGAALKLNIEKTFD
        INA  NET+I LIPKK E+  V+DFR ISL T LYK++++VL+  L++              +GRQILD + +ANE+++E +R N  G   K+++EK +D
Subjt:  INANVNETYIFLIPKKLEARSVADFRLISLTTCLYKIIARVLSEHLKK--------------EGRQILDVSPMANELIDEWKRKNDKGAALKLNIEKTFD

Query:  KVDYSFRDNILSVKGLGQKWRSWIKGCISPANFSIIINGRPRGEIIATRGLCQ
         V++ F D +L  KG G +WRSWI+GC+  ANFS++INGRPRG+  A+RGL Q
Subjt:  KVDYSFRDNILSVKGLGQKWRSWIKGCISPANFSIIINGRPRGEIIATRGLCQ

M5XUF8 Reverse transcriptase domain-containing protein (Fragment)

5.2e-34

49.02

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Query:  INANVNETYIFLIPKKLEARSVADFRLISLTTCLYKIIARVLSEHLKK--------------EGRQILDVSPMANELIDEWKRKNDKGAALKLNIEKTFD
        INA  NET+I LIPKK E+  V+DFR ISL T LYK++++VL+  L++              +GRQILD + +ANE+++E +R N  G   K+++EK +D
Subjt:  INANVNETYIFLIPKKLEARSVADFRLISLTTCLYKIIARVLSEHLKK--------------EGRQILDVSPMANELIDEWKRKNDKGAALKLNIEKTFD

Query:  KVDYSFRDNILSVKGLGQKWRSWIKGCISPANFSIIINGRPRGEIIATRGLCQ
         V++ F D +L  KG G +WRSWI+GC+  ANFS++INGRPRG+I A+RGL Q
Subjt:  KVDYSFRDNILSVKGLGQKWRSWIKGCISPANFSIIINGRPRGEIIATRGLCQ

SwissProt top hits

e value

%identity

Alignment

P14381 Transposon TX1 uncharacterized 149 kDa protein

3.1e-07

25.41

Show/hide

Query:  YWLLVGQDKGREMIEEFLLHLPFRDKGRELWNINANVNETYIFLIPKKLEARSVADFRLISLTTCLYKIIARVLSEHLKK--------------EGRQIL
        +W  +G D  R + E F        KG     +  +     + L+PKK + R + ++R +SL +  YKI+A+ +S  LK                GR I 
Subjt:  YWLLVGQDKGREMIEEFLLHLPFRDKGRELWNINANVNETYIFLIPKKLEARSVADFRLISLTTCLYKIIARVLSEHLKK--------------EGRQIL

Query:  DVSPMANELIDEWKRKNDKGAALKLNIEKTFDKVDYSFRDNILSVKGLGQKWRSWIKGCISPANFSIIINGRPRGEIIATRGLCQ
        D   +  +L+   +R     A L L+ EK FD+VD+ +    L     G ++  ++K   + A   + IN      +   RG+ Q
Subjt:  DVSPMANELIDEWKRKNDKGAALKLNIEKTFDKVDYSFRDNILSVKGLGQKWRSWIKGCISPANFSIIINGRPRGEIIATRGLCQ

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGAAGCTAGCATCAAGTTCAGCGGAAATGACACTGGTTTCATCCCAGGTGAAATAGCATTCCTTTCATCATCGAGATCACAGTATGGTTGTGGGATTTCTCCTCCTTG
GGACAACACAAAAGAAGATGACATGGAAGAAAACAAGGCAACAGACCCTCCTTCACCTTCAGCGACCATTTGTATTCTTGCTCCATGGCTTCAAAAATACCATATGTGTA
TTATGCCTATCCCATCTACTAGCAAAAAGAGCAAAATTGGGCAAAGACCGAACAAATTGGCTAGAGAGCTTGCAGAAGTTACCAAAGGTCTGTACTCTCTTTCCACTCTT
CTCACTCTTGCTGACGACTTCAAATTTTGGATTTCAAGGATCTATGGCCCTTCTTCTTATAAAAACAGGTCTCAGTTTTGGCAAGAATTATACGATCTCTCCTACCTGCG
CTCCGATTACTGGTTACTTGTTGGGCAGGATAAGGGACGGGAGATGATCGAGGAGTTCCTCCTCCATCTGCCATTCAGAGATAAGGGACGGGAGTTATGGAATATCAATG
CTAATGTCAACGAAACTTATATTTTTTTGATACCTAAGAAGCTTGAAGCTCGTTCGGTGGCTGATTTTCGTCTCATAAGTCTCACTACATGCCTCTACAAGATCATTGCT
AGGGTTCTATCAGAACATCTTAAAAAGGAAGGAAGACAAATTCTTGATGTCTCTCCTATGGCCAATGAGCTCATTGATGAATGGAAAAGGAAGAATGATAAAGGAGCGGC
CCTTAAACTGAACATCGAAAAAACTTTCGATAAGGTGGACTACAGTTTCCGAGACAATATCCTCTCTGTTAAAGGGTTGGGGCAAAAATGGAGATCATGGATTAAAGGTT
GCATCTCCCCTGCAAATTTCTCTATCATTATTAACGGTCGGCCTCGAGGTGAAATTATTGCTACTCGGGGTCTTTGTCAAGTGATGGGTGCTTTCAAAAATATGTCTGGA
CACAACAGCAATCTCCAAAAATCAGAAAACATCGGCATAAATGCAAAGTTCTACTGGGGAAGAGATGCACATCTAGATCCAAAGATGTTGGATAGGAAATTTGATGAGAA
CATTGGATAG

mRNA sequence

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Protein sequence

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MEASIKFSGNDTGFIPGEIAFLSSSRSQYGCGISPPWDNTKEDDMEENKATDPPSPSATICILAPWLQKYHMCIMPIPSTSKKSKIGQRPNKLARELAEVTKGLYSLSTL
LTLADDFKFWISRIYGPSSYKNRSQFWQELYDLSYLRSDYWLLVGQDKGREMIEEFLLHLPFRDKGRELWNINANVNETYIFLIPKKLEARSVADFRLISLTTCLYKIIA
RVLSEHLKKEGRQILDVSPMANELIDEWKRKNDKGAALKLNIEKTFDKVDYSFRDNILSVKGLGQKWRSWIKGCISPANFSIIINGRPRGEIIATRGLCQVMGAFKNMSG
HNSNLQKSENIGINAKFYWGRDAHLDPKMLDRKFDENIG

Lag0005457 (gene) of Sponge gourd (AG-4) v1 genome