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Lag0005464 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005464
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDNA-directed RNA polymerase V subunit 5C-like
Genome locationchr6:18378629..18379261
RNA-Seq ExpressionLag0005464
SyntenyLag0005464
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON46472.1 hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]7.5e-2438.81Show/hide
Query:  TLLAAYLKPEANVWHTFVRTRLLPTTHDTTVSKERVLLVFSILKILSIDVGKLLAKEILACSKRKVGRLFFPNLITALCLKAQVEVDENEEILMDKGIID
        T + + L P A VW+ F+++RLLPTTH  TVSK+R+LL+ S+L   SI+VG+++  EI AC+ RK G LFFP+LIT LC  A+     NEE L + G ID
Subjt:  TLLAAYLKPEANVWHTFVRTRLLPTTHDTTVSKERVLLVFSILKILSIDVGKLLAKEILACSKRKVGRLFFPNLITALCLKAQVEVDENEEILMDKGIID

Query:  STSIARLHGENKGRS------------STNMVCG--------VEEILRQQR----RMMRRMEHSENQQKAYWQYAHHRDSAMEKTFEYGFEELPQPFPQF
        + ++AR+  E    S            S+N   G        +E+ L QQ      MM  ++H+  QQ+ +W Y+  RD+A++K  +  F      FP F
Subjt:  STSIARLHGENKGRS------------STNMVCG--------VEEILRQQR----RMMRRMEHSENQQKAYWQYAHHRDSAMEKTFEYGFEELPQPFPQF

Query:  P
        P
Subjt:  P

PON59596.1 hypothetical protein PanWU01x14_158080 [Parasponia andersonii]4.9e-2338.38Show/hide
Query:  LKPEANVWHTFVRTRLLPTTHDTTVSKERVLLVFSILKILSIDVGKLLAKEILACSKRKVGRLFFPNLITALCLKAQVEVDENEEILMDKGIIDSTSIAR
        L P A VW+ F+++RLLPTTH  TVSK+R+LL++S+L   SI+VG+++  EI AC+ RK G LFFP+LIT LC  A+     NEE L   G ID+ ++AR
Subjt:  LKPEANVWHTFVRTRLLPTTHDTTVSKERVLLVFSILKILSIDVGKLLAKEILACSKRKVGRLFFPNLITALCLKAQVEVDENEEILMDKGIIDSTSIAR

Query:  LHGENKGR------------SSTNMVCG--------VEEILRQQR----RMMRRMEHSENQQKAYWQYAHHRDSAMEKTFEYGFEELPQPFPQFPSGL
        +  E +              +S++   G        +E+ L QQ      MM  ++H+  QQ+ +W Y+  RD+A++K  +  F      FP FP  L
Subjt:  LHGENKGR------------SSTNMVCG--------VEEILRQQR----RMMRRMEHSENQQKAYWQYAHHRDSAMEKTFEYGFEELPQPFPQFPSGL

PON62892.1 hypothetical protein PanWU01x14_135680 [Parasponia andersonii]1.2e-1841.18Show/hide
Query:  TLLAAYLKPEANVWHTFVRTRLLPTTHDTTVSKERVLLVFSILKILSIDVGKLLAKEILACSKRKVGRLFFPNLITALCLKAQVEVDENEEILMDKGIID
        T L + L P A VW+ F+++RLLPTTH  TVSKERVLL++S+L   SI+VG+++ +EI A + RK G LFFP+LIT +C  A+     NEE L + G ID
Subjt:  TLLAAYLKPEANVWHTFVRTRLLPTTHDTTVSKERVLLVFSILKILSIDVGKLLAKEILACSKRKVGRLFFPNLITALCLKAQVEVDENEEILMDKGIID

Query:  STSIARL---------HGENKGRSSTNMVCGVEEILRQQRRMMRRMEHSENQQ
        + ++AR+         H  +  R +        E L+Q + + +R+   E QQ
Subjt:  STSIARL---------HGENKGRSSTNMVCGVEEILRQQRRMMRRMEHSENQQ

PON65869.1 hypothetical protein PanWU01x14_113580, partial [Parasponia andersonii]1.8e-1747.37Show/hide
Query:  LAAYLKPEANVWHTFVRTRLLPTTHDTTVSKERVLLVFSILKILSIDVGKLLAKEILACSKRKVGRLFFPNLITALCLKAQVEVDENEEILMDKGIIDST
        L + L P A VW+ F+++RLLPTTH   VSKE VLL++S+L   SI+VG+++ +EI AC+ RK G LFFP+LIT +C  A+     NEE L + G ID+ 
Subjt:  LAAYLKPEANVWHTFVRTRLLPTTHDTTVSKERVLLVFSILKILSIDVGKLLAKEILACSKRKVGRLFFPNLITALCLKAQVEVDENEEILMDKGIIDST

Query:  SIARLHGENKGRSS
        ++AR+  E     S
Subjt:  SIARLHGENKGRSS

PON78020.1 hypothetical protein PanWU01x14_023740 [Parasponia andersonii]4.1e-2238.54Show/hide
Query:  TLLAAYLKPEANVWHTFVRTRLLPTTHDTTVSKERVLLVFSILKILSIDVGKLLAKEILACSKRKVGRLFFPNLITALCLKAQVEVDENEEILMDKGIID
        T + + L P A VW+ F+++RLLPTTH   VSK+R+LL+ S+L   SI+VG+++  EI AC+ +K G LFFP+LIT LC  A   V  NEE L + G ID
Subjt:  TLLAAYLKPEANVWHTFVRTRLLPTTHDTTVSKERVLLVFSILKILSIDVGKLLAKEILACSKRKVGRLFFPNLITALCLKAQVEVDENEEILMDKGIID

Query:  STSIARLHGENKGRS------------STNMVCGVEEILRQQRRMMRRM---EHSENQQKAYWQYAHHRDSAMEKTFEYGFEELPQPFPQFP
        + ++AR+  E    S            S++   G  ++L+Q + + +R+   EH+  QQ+ +W Y+  RD+A++K  +  F      FP FP
Subjt:  STSIARLHGENKGRS------------STNMVCGVEEILRQQRRMMRRM---EHSENQQKAYWQYAHHRDSAMEKTFEYGFEELPQPFPQFP

TrEMBL top hitse value%identityAlignment
A0A2P5BCG4 Uncharacterized protein (Fragment)3.6e-2438.81Show/hide
Query:  TLLAAYLKPEANVWHTFVRTRLLPTTHDTTVSKERVLLVFSILKILSIDVGKLLAKEILACSKRKVGRLFFPNLITALCLKAQVEVDENEEILMDKGIID
        T + + L P A VW+ F+++RLLPTTH  TVSK+R+LL+ S+L   SI+VG+++  EI AC+ RK G LFFP+LIT LC  A+     NEE L + G ID
Subjt:  TLLAAYLKPEANVWHTFVRTRLLPTTHDTTVSKERVLLVFSILKILSIDVGKLLAKEILACSKRKVGRLFFPNLITALCLKAQVEVDENEEILMDKGIID

Query:  STSIARLHGENKGRS------------STNMVCG--------VEEILRQQR----RMMRRMEHSENQQKAYWQYAHHRDSAMEKTFEYGFEELPQPFPQF
        + ++AR+  E    S            S+N   G        +E+ L QQ      MM  ++H+  QQ+ +W Y+  RD+A++K  +  F      FP F
Subjt:  STSIARLHGENKGRS------------STNMVCG--------VEEILRQQR----RMMRRMEHSENQQKAYWQYAHHRDSAMEKTFEYGFEELPQPFPQF

Query:  P
        P
Subjt:  P

A0A2P5CEY2 Uncharacterized protein2.4e-2338.38Show/hide
Query:  LKPEANVWHTFVRTRLLPTTHDTTVSKERVLLVFSILKILSIDVGKLLAKEILACSKRKVGRLFFPNLITALCLKAQVEVDENEEILMDKGIIDSTSIAR
        L P A VW+ F+++RLLPTTH  TVSK+R+LL++S+L   SI+VG+++  EI AC+ RK G LFFP+LIT LC  A+     NEE L   G ID+ ++AR
Subjt:  LKPEANVWHTFVRTRLLPTTHDTTVSKERVLLVFSILKILSIDVGKLLAKEILACSKRKVGRLFFPNLITALCLKAQVEVDENEEILMDKGIIDSTSIAR

Query:  LHGENKGR------------SSTNMVCG--------VEEILRQQR----RMMRRMEHSENQQKAYWQYAHHRDSAMEKTFEYGFEELPQPFPQFPSGL
        +  E +              +S++   G        +E+ L QQ      MM  ++H+  QQ+ +W Y+  RD+A++K  +  F      FP FP  L
Subjt:  LHGENKGR------------SSTNMVCG--------VEEILRQQR----RMMRRMEHSENQQKAYWQYAHHRDSAMEKTFEYGFEELPQPFPQFPSGL

A0A2P5CPE8 Uncharacterized protein6.0e-1941.18Show/hide
Query:  TLLAAYLKPEANVWHTFVRTRLLPTTHDTTVSKERVLLVFSILKILSIDVGKLLAKEILACSKRKVGRLFFPNLITALCLKAQVEVDENEEILMDKGIID
        T L + L P A VW+ F+++RLLPTTH  TVSKERVLL++S+L   SI+VG+++ +EI A + RK G LFFP+LIT +C  A+     NEE L + G ID
Subjt:  TLLAAYLKPEANVWHTFVRTRLLPTTHDTTVSKERVLLVFSILKILSIDVGKLLAKEILACSKRKVGRLFFPNLITALCLKAQVEVDENEEILMDKGIID

Query:  STSIARL---------HGENKGRSSTNMVCGVEEILRQQRRMMRRMEHSENQQ
        + ++AR+         H  +  R +        E L+Q + + +R+   E QQ
Subjt:  STSIARL---------HGENKGRSSTNMVCGVEEILRQQRRMMRRMEHSENQQ

A0A2P5CXU3 Uncharacterized protein (Fragment)8.7e-1847.37Show/hide
Query:  LAAYLKPEANVWHTFVRTRLLPTTHDTTVSKERVLLVFSILKILSIDVGKLLAKEILACSKRKVGRLFFPNLITALCLKAQVEVDENEEILMDKGIIDST
        L + L P A VW+ F+++RLLPTTH   VSKE VLL++S+L   SI+VG+++ +EI AC+ RK G LFFP+LIT +C  A+     NEE L + G ID+ 
Subjt:  LAAYLKPEANVWHTFVRTRLLPTTHDTTVSKERVLLVFSILKILSIDVGKLLAKEILACSKRKVGRLFFPNLITALCLKAQVEVDENEEILMDKGIIDST

Query:  SIARLHGENKGRSS
        ++AR+  E     S
Subjt:  SIARLHGENKGRSS

A0A2P5DXM3 Uncharacterized protein2.0e-2238.54Show/hide
Query:  TLLAAYLKPEANVWHTFVRTRLLPTTHDTTVSKERVLLVFSILKILSIDVGKLLAKEILACSKRKVGRLFFPNLITALCLKAQVEVDENEEILMDKGIID
        T + + L P A VW+ F+++RLLPTTH   VSK+R+LL+ S+L   SI+VG+++  EI AC+ +K G LFFP+LIT LC  A   V  NEE L + G ID
Subjt:  TLLAAYLKPEANVWHTFVRTRLLPTTHDTTVSKERVLLVFSILKILSIDVGKLLAKEILACSKRKVGRLFFPNLITALCLKAQVEVDENEEILMDKGIID

Query:  STSIARLHGENKGRS------------STNMVCGVEEILRQQRRMMRRM---EHSENQQKAYWQYAHHRDSAMEKTFEYGFEELPQPFPQFP
        + ++AR+  E    S            S++   G  ++L+Q + + +R+   EH+  QQ+ +W Y+  RD+A++K  +  F      FP FP
Subjt:  STSIARLHGENKGRS------------STNMVCGVEEILRQQRRMMRRM---EHSENQQKAYWQYAHHRDSAMEKTFEYGFEELPQPFPQFP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGGAACTCAGTTCGAACATTGTTGGCAGCGTACCTTAAGCCCGAAGCAAATGTATGGCATACCTTTGTGAGGACTAGGTTGCTCCCCACCACTCATGACACCAC
AGTGTCTAAAGAAAGAGTTCTCTTAGTTTTTTCCATCTTGAAGATCCTGAGCATTGACGTGGGGAAGCTCTTGGCAAAGGAGATTTTGGCTTGTTCAAAAAGGAAGGTAG
GAAGATTGTTTTTCCCAAATCTGATTACAGCATTATGTTTGAAGGCTCAAGTCGAAGTGGATGAGAATGAAGAAATTTTAATGGACAAGGGGATCATAGATTCAACATCT
ATAGCAAGATTGCACGGGGAGAATAAAGGGAGGTCAAGCACAAATATGGTTTGTGGGGTTGAGGAGATTTTAAGGCAGCAGAGAAGAATGATGAGGCGAATGGAACACAG
TGAAAATCAGCAAAAGGCCTACTGGCAATACGCTCATCACAGAGACTCTGCCATGGAAAAAACATTTGAATATGGCTTTGAGGAACTTCCTCAGCCATTCCCTCAATTCC
CATCAGGTTTATTTGACCCGTGGTGTCCTTCCCCATCTCCCAGTGGGAATGAAAATGATGCTGATGATGATCAAGAAGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGGAACTCAGTTCGAACATTGTTGGCAGCGTACCTTAAGCCCGAAGCAAATGTATGGCATACCTTTGTGAGGACTAGGTTGCTCCCCACCACTCATGACACCAC
AGTGTCTAAAGAAAGAGTTCTCTTAGTTTTTTCCATCTTGAAGATCCTGAGCATTGACGTGGGGAAGCTCTTGGCAAAGGAGATTTTGGCTTGTTCAAAAAGGAAGGTAG
GAAGATTGTTTTTCCCAAATCTGATTACAGCATTATGTTTGAAGGCTCAAGTCGAAGTGGATGAGAATGAAGAAATTTTAATGGACAAGGGGATCATAGATTCAACATCT
ATAGCAAGATTGCACGGGGAGAATAAAGGGAGGTCAAGCACAAATATGGTTTGTGGGGTTGAGGAGATTTTAAGGCAGCAGAGAAGAATGATGAGGCGAATGGAACACAG
TGAAAATCAGCAAAAGGCCTACTGGCAATACGCTCATCACAGAGACTCTGCCATGGAAAAAACATTTGAATATGGCTTTGAGGAACTTCCTCAGCCATTCCCTCAATTCC
CATCAGGTTTATTTGACCCGTGGTGTCCTTCCCCATCTCCCAGTGGGAATGAAAATGATGCTGATGATGATCAAGAAGATTGA
Protein sequenceShow/hide protein sequence
MARNSVRTLLAAYLKPEANVWHTFVRTRLLPTTHDTTVSKERVLLVFSILKILSIDVGKLLAKEILACSKRKVGRLFFPNLITALCLKAQVEVDENEEILMDKGIIDSTS
IARLHGENKGRSSTNMVCGVEEILRQQRRMMRRMEHSENQQKAYWQYAHHRDSAMEKTFEYGFEELPQPFPQFPSGLFDPWCPSPSPSGNENDADDDQED