; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0005475 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005475
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr6:19083968..19084465
RNA-Seq ExpressionLag0005475
SyntenyLag0005475
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0059652.1 gag protease polyprotein [Cucumis melo var. makuwa]7.7e-3262.5Show/hide
Query:  NDEFSSIVPSRMKRKPFVLINTE----DTEISEKDVEEARSSLEVGSQSTIDELKEVNLGTTEEPRLTFTNESLSAEEELEYLNFLVTYEDVFAWSYKEM
        +++  S VPSRMKRK FV +NTE    D +  E+D E A  SLE G QS IDELKEVNLGT EEPRLTF +  +S  +E EY+N L  Y+DVFAWSYKEM
Subjt:  NDEFSSIVPSRMKRKPFVLINTE----DTEISEKDVEEARSSLEVGSQSTIDELKEVNLGTTEEPRLTFTNESLSAEEELEYLNFLVTYEDVFAWSYKEM

Query:  PRLDPKIAAHHLAIKQGYQPIKQAQRRF
        P LDPK+A H LAIK  +QP KQAQRRF
Subjt:  PRLDPKIAAHHLAIKQGYQPIKQAQRRF

TYK20897.1 uncharacterized protein E5676_scaffold284G00330 [Cucumis melo var. makuwa]1.1e-3050.93Show/hide
Query:  EFSSIVPSRMKRKPFVLINTE---------------------------------------DTEISEKDVEEARSSLEVGSQSTIDELKEVNLGTTEEPRL
        E  S VP RMKRK FV +NT                                        + E  E+DVE+   SLE G QS +DELKEVNLGT EEPR 
Subjt:  EFSSIVPSRMKRKPFVLINTE---------------------------------------DTEISEKDVEEARSSLEVGSQSTIDELKEVNLGTTEEPRL

Query:  TFTNESLSAEEELEYLNFLVTYEDVFAWSYKEMPRLDPKIAAHHLAIKQGYQPIKQAQRRF
        TF + SLS+EEE +Y++ L  Y+D+FAWSYKEMPRLDPK+A HHLAIK GY+PIKQAQRRF
Subjt:  TFTNESLSAEEELEYLNFLVTYEDVFAWSYKEMPRLDPKIAAHHLAIKQGYQPIKQAQRRF

TYK28162.1 uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa]8.5e-3151.55Show/hide
Query:  EFSSIVPSRMKRKPFVLINTE---------------------------------------DTEISEKDVEEARSSLEVGSQSTIDELKEVNLGTTEEPRL
        E  S VPSRMKRK FV +NT                                        + E  E+D EEA  SLE G QST+DELKEVNLGT EEPR 
Subjt:  EFSSIVPSRMKRKPFVLINTE---------------------------------------DTEISEKDVEEARSSLEVGSQSTIDELKEVNLGTTEEPRL

Query:  TFTNESLSAEEELEYLNFLVTYEDVFAWSYKEMPRLDPKIAAHHLAIKQGYQPIKQAQRRF
        TF + SLS+EEE +Y++ L  Y+D+FAWSYKEMP LDPK+A HHLAIK GY+PIKQAQR F
Subjt:  TFTNESLSAEEELEYLNFLVTYEDVFAWSYKEMPRLDPKIAAHHLAIKQGYQPIKQAQRRF

TYK28756.1 uncharacterized protein E5676_scaffold403G001090 [Cucumis melo var. makuwa]2.9e-3151.55Show/hide
Query:  EFSSIVPSRMKRKPFVLINTE---------------------------------------DTEISEKDVEEARSSLEVGSQSTIDELKEVNLGTTEEPRL
        E  S VPSRMKRK FV +NT                                        + E  E+D EEA  SLE G QST+DELKEVNLGT EEPR 
Subjt:  EFSSIVPSRMKRKPFVLINTE---------------------------------------DTEISEKDVEEARSSLEVGSQSTIDELKEVNLGTTEEPRL

Query:  TFTNESLSAEEELEYLNFLVTYEDVFAWSYKEMPRLDPKIAAHHLAIKQGYQPIKQAQRRF
        TF + SLS+EEE +Y++ L  Y+D+FAWSYKEMP LDPK+  HHLAIK GY+PIKQAQRRF
Subjt:  TFTNESLSAEEELEYLNFLVTYEDVFAWSYKEMPRLDPKIAAHHLAIKQGYQPIKQAQRRF

XP_031742888.1 uncharacterized protein LOC116404510 [Cucumis sativus]1.4e-3363.08Show/hide
Query:  DNDEFSSIVPSRMKRKPFVLINTED-----TEISEKDVEEARSSLEVGSQSTIDELKEVNLGTTEEPRLTFTNESLSAEEELEYLNFLVTYEDVFAWSYK
        +N E  S VPSRMKRK FV +NT        E+ +K  E A  SLE G QST+DELKEVNLGT EEPR TF + SLS EE  +Y++ L  Y D+FAWSYK
Subjt:  DNDEFSSIVPSRMKRKPFVLINTED-----TEISEKDVEEARSSLEVGSQSTIDELKEVNLGTTEEPRLTFTNESLSAEEELEYLNFLVTYEDVFAWSYK

Query:  EMPRLDPKIAAHHLAIKQGYQPIKQAQRRF
        EMP LDPK+A HHLAIK GY+PIKQAQRRF
Subjt:  EMPRLDPKIAAHHLAIKQGYQPIKQAQRRF

TrEMBL top hitse value%identityAlignment
A0A5A7SPY4 RNase H domain-containing protein5.4e-3150.93Show/hide
Query:  EFSSIVPSRMKRKPFVLINTE---------------------------------------DTEISEKDVEEARSSLEVGSQSTIDELKEVNLGTTEEPRL
        E  S VP RMKRK FV +NT                                        + E  E+DVE+   SLE G QS +DELKEVNLGT EEPR 
Subjt:  EFSSIVPSRMKRKPFVLINTE---------------------------------------DTEISEKDVEEARSSLEVGSQSTIDELKEVNLGTTEEPRL

Query:  TFTNESLSAEEELEYLNFLVTYEDVFAWSYKEMPRLDPKIAAHHLAIKQGYQPIKQAQRRF
        TF + SLS+EEE +Y++ L  Y+D+FAWSYKEMPRLDPK+A HHLAIK GY+PIKQAQRRF
Subjt:  TFTNESLSAEEELEYLNFLVTYEDVFAWSYKEMPRLDPKIAAHHLAIKQGYQPIKQAQRRF

A0A5D3CAF2 Gag protease polyprotein3.7e-3262.5Show/hide
Query:  NDEFSSIVPSRMKRKPFVLINTE----DTEISEKDVEEARSSLEVGSQSTIDELKEVNLGTTEEPRLTFTNESLSAEEELEYLNFLVTYEDVFAWSYKEM
        +++  S VPSRMKRK FV +NTE    D +  E+D E A  SLE G QS IDELKEVNLGT EEPRLTF +  +S  +E EY+N L  Y+DVFAWSYKEM
Subjt:  NDEFSSIVPSRMKRKPFVLINTE----DTEISEKDVEEARSSLEVGSQSTIDELKEVNLGTTEEPRLTFTNESLSAEEELEYLNFLVTYEDVFAWSYKEM

Query:  PRLDPKIAAHHLAIKQGYQPIKQAQRRF
        P LDPK+A H LAIK  +QP KQAQRRF
Subjt:  PRLDPKIAAHHLAIKQGYQPIKQAQRRF

A0A5D3DB95 RNase H domain-containing protein5.4e-3150.93Show/hide
Query:  EFSSIVPSRMKRKPFVLINTE---------------------------------------DTEISEKDVEEARSSLEVGSQSTIDELKEVNLGTTEEPRL
        E  S VP RMKRK FV +NT                                        + E  E+DVE+   SLE G QS +DELKEVNLGT EEPR 
Subjt:  EFSSIVPSRMKRKPFVLINTE---------------------------------------DTEISEKDVEEARSSLEVGSQSTIDELKEVNLGTTEEPRL

Query:  TFTNESLSAEEELEYLNFLVTYEDVFAWSYKEMPRLDPKIAAHHLAIKQGYQPIKQAQRRF
        TF + SLS+EEE +Y++ L  Y+D+FAWSYKEMPRLDPK+A HHLAIK GY+PIKQAQRRF
Subjt:  TFTNESLSAEEELEYLNFLVTYEDVFAWSYKEMPRLDPKIAAHHLAIKQGYQPIKQAQRRF

A0A5D3DXC7 Reverse transcriptase domain-containing protein4.1e-3151.55Show/hide
Query:  EFSSIVPSRMKRKPFVLINTE---------------------------------------DTEISEKDVEEARSSLEVGSQSTIDELKEVNLGTTEEPRL
        E  S VPSRMKRK FV +NT                                        + E  E+D EEA  SLE G QST+DELKEVNLGT EEPR 
Subjt:  EFSSIVPSRMKRKPFVLINTE---------------------------------------DTEISEKDVEEARSSLEVGSQSTIDELKEVNLGTTEEPRL

Query:  TFTNESLSAEEELEYLNFLVTYEDVFAWSYKEMPRLDPKIAAHHLAIKQGYQPIKQAQRRF
        TF + SLS+EEE +Y++ L  Y+D+FAWSYKEMP LDPK+A HHLAIK GY+PIKQAQR F
Subjt:  TFTNESLSAEEELEYLNFLVTYEDVFAWSYKEMPRLDPKIAAHHLAIKQGYQPIKQAQRRF

A0A5D3DYG9 Reverse transcriptase domain-containing protein1.4e-3151.55Show/hide
Query:  EFSSIVPSRMKRKPFVLINTE---------------------------------------DTEISEKDVEEARSSLEVGSQSTIDELKEVNLGTTEEPRL
        E  S VPSRMKRK FV +NT                                        + E  E+D EEA  SLE G QST+DELKEVNLGT EEPR 
Subjt:  EFSSIVPSRMKRKPFVLINTE---------------------------------------DTEISEKDVEEARSSLEVGSQSTIDELKEVNLGTTEEPRL

Query:  TFTNESLSAEEELEYLNFLVTYEDVFAWSYKEMPRLDPKIAAHHLAIKQGYQPIKQAQRRF
        TF + SLS+EEE +Y++ L  Y+D+FAWSYKEMP LDPK+  HHLAIK GY+PIKQAQRRF
Subjt:  TFTNESLSAEEELEYLNFLVTYEDVFAWSYKEMPRLDPKIAAHHLAIKQGYQPIKQAQRRF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGACAACGACGAATTTTCAAGTATTGTTCCTTCACGAATGAAGAGAAAACCTTTTGTTCTCATAAATACGGAAGATACCGAAATTTCTGAAAAAGATGTTGAAGA
AGCACGATCATCATTAGAGGTTGGTAGCCAATCAACAATTGATGAGCTCAAAGAAGTAAACCTTGGTACAACAGAAGAACCACGCCTGACATTCACCAATGAGTCACTTA
GTGCTGAAGAGGAACTTGAATACTTGAACTTTCTCGTTACATATGAAGATGTCTTTGCTTGGTCGTACAAAGAGATGCCAAGACTCGATCCAAAGATAGCAGCCCACCAT
CTTGCGATTAAACAGGGATATCAACCTATTAAGCAGGCGCAAAGACGTTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATGACAACGACGAATTTTCAAGTATTGTTCCTTCACGAATGAAGAGAAAACCTTTTGTTCTCATAAATACGGAAGATACCGAAATTTCTGAAAAAGATGTTGAAGA
AGCACGATCATCATTAGAGGTTGGTAGCCAATCAACAATTGATGAGCTCAAAGAAGTAAACCTTGGTACAACAGAAGAACCACGCCTGACATTCACCAATGAGTCACTTA
GTGCTGAAGAGGAACTTGAATACTTGAACTTTCTCGTTACATATGAAGATGTCTTTGCTTGGTCGTACAAAGAGATGCCAAGACTCGATCCAAAGATAGCAGCCCACCAT
CTTGCGATTAAACAGGGATATCAACCTATTAAGCAGGCGCAAAGACGTTTCTGA
Protein sequenceShow/hide protein sequence
MNDNDEFSSIVPSRMKRKPFVLINTEDTEISEKDVEEARSSLEVGSQSTIDELKEVNLGTTEEPRLTFTNESLSAEEELEYLNFLVTYEDVFAWSYKEMPRLDPKIAAHH
LAIKQGYQPIKQAQRRF