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Lag0005480 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005480
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr6:19306133..19306648
RNA-Seq ExpressionLag0005480
SyntenyLag0005480
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023897448.1 uncharacterized protein LOC112009346 [Quercus suber]1.5e-0929.94Show/hide
Query:  EDFILHVDATWDEKVKRSGVEVVIRTKPGTLVVVLQKGIPFYSTSLCVEAVAVLEGFKLATQRNIHRVTICSDSLSLISTLLLTEWCQAECFPIVSDIQQ
        + + ++ D    +   ++G+ VVIR   G ++V L + IP  ST++ VEA+A     +LA +  +++  +  DSL L++ L       A+   IV+DI  
Subjt:  EDFILHVDATWDEKVKRSGVEVVIRTKPGTLVVVLQKGIPFYSTSLCVEAVAVLEGFKLATQRNIHRVTICSDSLSLISTLLLTEWCQAECFPIVSDIQQ

Query:  LGTLFQQISYCHVNREYNRLSHELARLDM-VSTTRFWSRNFPIWIEDIARCELCCFV
        L   F  IS+ HV R  N ++H +AR  +  S+ + W  + P  I D+ + +L   V
Subjt:  LGTLFQQISYCHVNREYNRLSHELARLDM-VSTTRFWSRNFPIWIEDIARCELCCFV

XP_023904539.1 uncharacterized protein LOC112016250 [Quercus suber]2.9e-1029.3Show/hide
Query:  EDFILHVDATWDEKVKRSGVEVVIRTKPGTLVVVLQKGIPFYSTSLCVEAVAVLEGFKLATQRNIHRVTICSDSLSLISTLLLTEWCQAECFPIVSDIQQ
        + + ++ D    +   ++G+ VVIR   G ++V L + IP  ST++ VEA+A     ++A +  +++  +  DSL L+  L       A+   IV+DI  
Subjt:  EDFILHVDATWDEKVKRSGVEVVIRTKPGTLVVVLQKGIPFYSTSLCVEAVAVLEGFKLATQRNIHRVTICSDSLSLISTLLLTEWCQAECFPIVSDIQQ

Query:  LGTLFQQISYCHVNREYNRLSHELARLDM-VSTTRFWSRNFPIWIEDIARCELCCFV
        L + F  IS+ HV R  N ++H +AR  +  S+ + W  + P+ I D+ + +L   V
Subjt:  LGTLFQQISYCHVNREYNRLSHELARLDM-VSTTRFWSRNFPIWIEDIARCELCCFV

XP_027088768.1 uncharacterized protein LOC113710130 [Coffea arabica]4.7e-0828.08Show/hide
Query:  LHVDATWDEKVKRSGVEVVIRTKPGTLVVVLQKGIPFYSTSLCVEAVAVLEGFKLATQRNIHRVTICSDSLSLISTLLLTEWCQAECFPIVSDIQQLGTL
        L+ DA + + ++R+G+ VV R   G L+ V  +     S     EA A+  G ++A + N   V + SD   ++  +   +  Q     I+ DI  +  L
Subjt:  LHVDATWDEKVKRSGVEVVIRTKPGTLVVVLQKGIPFYSTSLCVEAVAVLEGFKLATQRNIHRVTICSDSLSLISTLLLTEWCQAECFPIVSDIQQLGTL

Query:  FQQISYCHVNREYNRLSHELARLDMVSTTRF-WSRNFPIWIEDIAR
        F+Q ++  V+R+ NR +H +A+  +  TT   W   FP+W+++ A+
Subjt:  FQQISYCHVNREYNRLSHELARLDMVSTTRF-WSRNFPIWIEDIAR

XP_030927178.1 uncharacterized protein LOC115953579 [Quercus lobata]2.1e-0832.58Show/hide
Query:  KRSGVEVVIRTKPGTLVVVLQKGIPFYSTSLCVEAVAVLEGFKLATQRNIHRVTICSDSLSLISTLLLTEWCQAECFPIVSDIQQLGTLFQQISYCHVNR
        +R+G+ V IR K G ++V   + IP   T + VEA+   +  +LA    + RV +  D   L+ TL       A+   I  DI+   ++FQ IS+ HV R
Subjt:  KRSGVEVVIRTKPGTLVVVLQKGIPFYSTSLCVEAVAVLEGFKLATQRNIHRVTICSDSLSLISTLLLTEWCQAECFPIVSDIQQLGTLFQQISYCHVNR

Query:  EYNRLSHELARLDMVSTTRFWSRNFPIWIEDI
          N ++H LAR  ++S       +F +W+ED+
Subjt:  EYNRLSHELARLDMVSTTRFWSRNFPIWIEDI

XP_030963888.1 uncharacterized protein LOC115985057 [Quercus lobata]7.3e-0930.87Show/hide
Query:  LHVDATWDEKVKRSGVEVVIRTKPGTLVVVLQKGIPFYSTSLCVEAVAVLEGFKLATQRNIHRVTICSDSLSLISTLLLTEWCQAECFPIVSDIQQLGTL
        ++ D+    K +R+G+ V I+ + G ++V   + IP   T + VEA+A  +  +LA    + RV +  D   L+ TL  T    A+   I  DI+   ++
Subjt:  LHVDATWDEKVKRSGVEVVIRTKPGTLVVVLQKGIPFYSTSLCVEAVAVLEGFKLATQRNIHRVTICSDSLSLISTLLLTEWCQAECFPIVSDIQQLGTL

Query:  FQQISYCHVNREYNRLSHELARLDMVST-TRFWSRNFPIWIEDIARCEL
        FQ IS+ HV R  N ++H LAR  ++S     W  N P  +E + + +L
Subjt:  FQQISYCHVNREYNRLSHELARLDMVST-TRFWSRNFPIWIEDIARCEL

TrEMBL top hitse value%identityAlignment
A0A2N9GN35 Uncharacterized protein1.1e-1032.89Show/hide
Query:  DFILHVDATWDEKVKRSGVEVVIRTKPGTLVVVLQKGIPFYSTSLCVEAVAVLEGFKLATQRNIHRVTICSDSLSLISTLLLTEWCQAECFPIVSDIQQL
        +F ++ DA    K+  +GV VVIR   G  + V  +  P    +   EA+A     +LA    +  V +  DSL +I+ L   E C A    ++ DIQ L
Subjt:  DFILHVDATWDEKVKRSGVEVVIRTKPGTLVVVLQKGIPFYSTSLCVEAVAVLEGFKLATQRNIHRVTICSDSLSLISTLLLTEWCQAECFPIVSDIQQL

Query:  GTLFQQISYCHVNREYNRLSHELAR--LDMVSTTRFWSRNFPIWIEDIARCE
           FQ++ YCHV +E N  +H LAR  LD+ S    W    P ++E + + E
Subjt:  GTLFQQISYCHVNREYNRLSHELAR--LDMVSTTRFWSRNFPIWIEDIARCE

A0A2N9GXF5 Uncharacterized protein1.1e-1032.89Show/hide
Query:  DFILHVDATWDEKVKRSGVEVVIRTKPGTLVVVLQKGIPFYSTSLCVEAVAVLEGFKLATQRNIHRVTICSDSLSLISTLLLTEWCQAECFPIVSDIQQL
        +F ++ DA    K+  +GV VVIR   G  + V  +  P    +   EA+A     +LA    +  V +  DSL +I+ L   E C A    ++ DIQ L
Subjt:  DFILHVDATWDEKVKRSGVEVVIRTKPGTLVVVLQKGIPFYSTSLCVEAVAVLEGFKLATQRNIHRVTICSDSLSLISTLLLTEWCQAECFPIVSDIQQL

Query:  GTLFQQISYCHVNREYNRLSHELAR--LDMVSTTRFWSRNFPIWIEDIARCE
           FQ++ YCHV +E N  +H LAR  LD+ S    W    P ++E + + E
Subjt:  GTLFQQISYCHVNREYNRLSHELAR--LDMVSTTRFWSRNFPIWIEDIARCE

A0A2N9HFW4 Uncharacterized protein1.1e-1032.89Show/hide
Query:  DFILHVDATWDEKVKRSGVEVVIRTKPGTLVVVLQKGIPFYSTSLCVEAVAVLEGFKLATQRNIHRVTICSDSLSLISTLLLTEWCQAECFPIVSDIQQL
        +F ++ DA    K+  +GV VVIR   G  + V  +  P    +   EA+A     +LA    +  V +  DSL +I+ L   E C A    ++ DIQ L
Subjt:  DFILHVDATWDEKVKRSGVEVVIRTKPGTLVVVLQKGIPFYSTSLCVEAVAVLEGFKLATQRNIHRVTICSDSLSLISTLLLTEWCQAECFPIVSDIQQL

Query:  GTLFQQISYCHVNREYNRLSHELAR--LDMVSTTRFWSRNFPIWIEDIARCE
           FQ++ YCHV +E N  +H LAR  LD+ S    W    P ++E + + E
Subjt:  GTLFQQISYCHVNREYNRLSHELAR--LDMVSTTRFWSRNFPIWIEDIARCE

A0A2N9HG35 RNase H domain-containing protein1.1e-1032.89Show/hide
Query:  DFILHVDATWDEKVKRSGVEVVIRTKPGTLVVVLQKGIPFYSTSLCVEAVAVLEGFKLATQRNIHRVTICSDSLSLISTLLLTEWCQAECFPIVSDIQQL
        +F ++ DA    K+  +GV VVIR   G  + V  +  P    +   EA+A     +LA    +  V +  DSL +I+ L   E C A    ++ DIQ L
Subjt:  DFILHVDATWDEKVKRSGVEVVIRTKPGTLVVVLQKGIPFYSTSLCVEAVAVLEGFKLATQRNIHRVTICSDSLSLISTLLLTEWCQAECFPIVSDIQQL

Query:  GTLFQQISYCHVNREYNRLSHELAR--LDMVSTTRFWSRNFPIWIEDIARCE
           FQ++ YCHV +E N  +H LAR  LD+ S    W    P ++E + + E
Subjt:  GTLFQQISYCHVNREYNRLSHELAR--LDMVSTTRFWSRNFPIWIEDIARCE

A0A2N9I8Z6 Reverse transcriptase domain-containing protein1.4e-1032.89Show/hide
Query:  DFILHVDATWDEKVKRSGVEVVIRTKPGTLVVVLQKGIPFYSTSLCVEAVAVLEGFKLATQRNIHRVTICSDSLSLISTLLLTEWCQAECFPIVSDIQQL
        +F ++ DA    K+  +GV VVIR   G  + V  +  P    +   EA+A     +LA    +  V +  DSL +I+ L   E C A    ++ DIQ L
Subjt:  DFILHVDATWDEKVKRSGVEVVIRTKPGTLVVVLQKGIPFYSTSLCVEAVAVLEGFKLATQRNIHRVTICSDSLSLISTLLLTEWCQAECFPIVSDIQQL

Query:  GTLFQQISYCHVNREYNRLSHELAR--LDMVSTTRFWSRNFPIWIEDIARCE
           FQ++ YCHV +E N  +H LAR  LD+ S    W    P ++E + + E
Subjt:  GTLFQQISYCHVNREYNRLSHELAR--LDMVSTTRFWSRNFPIWIEDIARCE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein8.6e-0829.92Show/hide
Query:  LHVDATWDEKVKRSGVEVVIRTKPGTLVVVLQKGIPFYSTSLCVEAVAVLEGFKLATQRNIHRVTICSDSLSLISTLLLTEWCQAECFPIVSDIQQLGTL
        +  DA W  + K  G   VIR  P    +  Q         L  EA+A+    + A    I ++++ SDS  LI T + +E    E + I+ DI  L   
Subjt:  LHVDATWDEKVKRSGVEVVIRTKPGTLVVVLQKGIPFYSTSLCVEAVAVLEGFKLATQRNIHRVTICSDSLSLISTLLLTEWCQAECFPIVSDIQQLGTL

Query:  FQQISYCHVNREYNRLSHELARLDMVS
        F  +S+  V R  NR++ ELA+  ++S
Subjt:  FQQISYCHVNREYNRLSHELARLDMVS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTATCGGAAATGATCGCAGGAGGGGAGGATTTTATTTTACATGTTGATGCAACTTGGGACGAGAAGGTAAAGCGAAGTGGAGTGGAGGTAGTGATTCGTACAAAGCC
AGGGACATTGGTGGTCGTCTTACAAAAGGGGATTCCCTTTTACTCAACTTCACTATGTGTCGAAGCGGTAGCAGTCCTTGAGGGTTTTAAATTGGCAACTCAGAGGAACA
TCCATAGAGTTACGATTTGCTCGGATTCCCTATCGTTGATTTCCACTCTTCTTCTGACAGAATGGTGTCAAGCGGAATGCTTTCCAATTGTGTCAGATATCCAACAATTG
GGGACTTTATTTCAACAGATCAGTTATTGCCATGTGAATCGTGAATACAACCGTTTGTCTCATGAATTAGCTAGATTAGACATGGTTTCAACTACTCGATTTTGGAGTAG
GAACTTTCCAATTTGGATAGAAGATATAGCTCGTTGTGAGTTGTGTTGTTTTGTTACCCCACTGGAGCTTTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTATCGGAAATGATCGCAGGAGGGGAGGATTTTATTTTACATGTTGATGCAACTTGGGACGAGAAGGTAAAGCGAAGTGGAGTGGAGGTAGTGATTCGTACAAAGCC
AGGGACATTGGTGGTCGTCTTACAAAAGGGGATTCCCTTTTACTCAACTTCACTATGTGTCGAAGCGGTAGCAGTCCTTGAGGGTTTTAAATTGGCAACTCAGAGGAACA
TCCATAGAGTTACGATTTGCTCGGATTCCCTATCGTTGATTTCCACTCTTCTTCTGACAGAATGGTGTCAAGCGGAATGCTTTCCAATTGTGTCAGATATCCAACAATTG
GGGACTTTATTTCAACAGATCAGTTATTGCCATGTGAATCGTGAATACAACCGTTTGTCTCATGAATTAGCTAGATTAGACATGGTTTCAACTACTCGATTTTGGAGTAG
GAACTTTCCAATTTGGATAGAAGATATAGCTCGTTGTGAGTTGTGTTGTTTTGTTACCCCACTGGAGCTTTTTTGA
Protein sequenceShow/hide protein sequence
MVSEMIAGGEDFILHVDATWDEKVKRSGVEVVIRTKPGTLVVVLQKGIPFYSTSLCVEAVAVLEGFKLATQRNIHRVTICSDSLSLISTLLLTEWCQAECFPIVSDIQQL
GTLFQQISYCHVNREYNRLSHELARLDMVSTTRFWSRNFPIWIEDIARCELCCFVTPLELF