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Lag0005481 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005481
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr6:19308109..19309057
RNA-Seq ExpressionLag0005481
SyntenyLag0005481
Gene Ontology termsGO:0046914 - transition metal ion binding (molecular function)
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXB66629.1 hypothetical protein L484_024925 [Morus notabilis]1.9e-0854.39Show/hide
Query:  GRKVCVRVTLDITKPLRRCIKVNLDEPLGSYWTPIRYEKLPDLCGYCGIIGHGVKDC
        G+ V VRV LDITKP+RR +K+ L +     WT +RYEKLPD C  CG  GHG ++C
Subjt:  GRKVCVRVTLDITKPLRRCIKVNLDEPLGSYWTPIRYEKLPDLCGYCGIIGHGVKDC

TXG67077.1 hypothetical protein EZV62_008352 [Acer yangbiense]1.1e-0849.12Show/hide
Query:  GRKVCVRVTLDITKPLRRCIKVNLDEPLGSYWTPIRYEKLPDLCGYCGIIGHGVKDC
        GR + V+V +DI+KPL RC+++N+D+P       + YEKLP+ C  CGI+GHG++DC
Subjt:  GRKVCVRVTLDITKPLRRCIKVNLDEPLGSYWTPIRYEKLPDLCGYCGIIGHGVKDC

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]6.3e-1557.81Show/hide
Query:  GRKVCVRVTLDITKPLRRCIKVNLDEPLGSYWTPIRYEKLPDLCGYCGIIGHGVKDCNSYYLAA
        G  + +RV +DITKPLRR IK+N+D P+G  W PI+YE+LPD C +CG+IGH   DC++ YLAA
Subjt:  GRKVCVRVTLDITKPLRRCIKVNLDEPLGSYWTPIRYEKLPDLCGYCGIIGHGVKDCNSYYLAA

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]8.7e-0928.99Show/hide
Query:  EGTKVDVDRQAAEVTRRSMRFSLIGKLLLTRFIS---DDRRNRRMFFVRDRGCSTSSYSYSLNQFAWS---------NQRPWS-----------------
        E T +DVD  A   T   +   L+GKL + R I+        R  + + +      S  Y+L  F+++            PW+                 
Subjt:  EGTKVDVDRQAAEVTRRSMRFSLIGKLLLTRFIS---DDRRNRRMFFVRDRGCSTSSYSYSLNQFAWS---------NQRPWS-----------------

Query:  -------LSSWI------FGCISTNFLWNFSTLQWRLAWGMLLDGLKSMTTVGVILD-GRKVCVRVTLDITKPLRRCIKVNLDEPLGSYWTPIRYEKLPD
               L  W+       GCI         T    +  G  L G +      +  D G  + VRV LDI+KPLRR IK+NLD P+G  W PI+YE+LPD
Subjt:  -------LSSWI------FGCISTNFLWNFSTLQWRLAWGMLLDGLKSMTTVGVILD-GRKVCVRVTLDITKPLRRCIKVNLDEPLGSYWTPIRYEKLPD

Query:  LCGYCGI
         C +CG+
Subjt:  LCGYCGI

XP_024018029.1 uncharacterized protein LOC112090594 [Morus notabilis]1.9e-0854.39Show/hide
Query:  GRKVCVRVTLDITKPLRRCIKVNLDEPLGSYWTPIRYEKLPDLCGYCGIIGHGVKDC
        G+ V VRV LDITKP+RR +K+ L +     WT +RYEKLPD C  CG  GHG ++C
Subjt:  GRKVCVRVTLDITKPLRRCIKVNLDEPLGSYWTPIRYEKLPDLCGYCGIIGHGVKDC

TrEMBL top hitse value%identityAlignment
A0A5C7ICW8 CCHC-type domain-containing protein5.5e-0949.12Show/hide
Query:  GRKVCVRVTLDITKPLRRCIKVNLDEPLGSYWTPIRYEKLPDLCGYCGIIGHGVKDC
        GR + V+V +DI+KPL RC+++N+D+P       + YEKLP+ C  CGI+GHG++DC
Subjt:  GRKVCVRVTLDITKPLRRCIKVNLDEPLGSYWTPIRYEKLPDLCGYCGIIGHGVKDC

A0A6J1DU55 uncharacterized protein LOC1110231353.0e-1557.81Show/hide
Query:  GRKVCVRVTLDITKPLRRCIKVNLDEPLGSYWTPIRYEKLPDLCGYCGIIGHGVKDCNSYYLAA
        G  + +RV +DITKPLRR IK+N+D P+G  W PI+YE+LPD C +CG+IGH   DC++ YLAA
Subjt:  GRKVCVRVTLDITKPLRRCIKVNLDEPLGSYWTPIRYEKLPDLCGYCGIIGHGVKDCNSYYLAA

A0A6J1DX30 uncharacterized protein LOC1110248744.2e-0928.99Show/hide
Query:  EGTKVDVDRQAAEVTRRSMRFSLIGKLLLTRFIS---DDRRNRRMFFVRDRGCSTSSYSYSLNQFAWS---------NQRPWS-----------------
        E T +DVD  A   T   +   L+GKL + R I+        R  + + +      S  Y+L  F+++            PW+                 
Subjt:  EGTKVDVDRQAAEVTRRSMRFSLIGKLLLTRFIS---DDRRNRRMFFVRDRGCSTSSYSYSLNQFAWS---------NQRPWS-----------------

Query:  -------LSSWI------FGCISTNFLWNFSTLQWRLAWGMLLDGLKSMTTVGVILD-GRKVCVRVTLDITKPLRRCIKVNLDEPLGSYWTPIRYEKLPD
               L  W+       GCI         T    +  G  L G +      +  D G  + VRV LDI+KPLRR IK+NLD P+G  W PI+YE+LPD
Subjt:  -------LSSWI------FGCISTNFLWNFSTLQWRLAWGMLLDGLKSMTTVGVILD-GRKVCVRVTLDITKPLRRCIKVNLDEPLGSYWTPIRYEKLPD

Query:  LCGYCGI
         C +CG+
Subjt:  LCGYCGI

W9RBJ0 CCHC-type domain-containing protein9.4e-0954.39Show/hide
Query:  GRKVCVRVTLDITKPLRRCIKVNLDEPLGSYWTPIRYEKLPDLCGYCGIIGHGVKDC
        G+ V VRV LDITKP+RR +K+ L +     WT +RYEKLPD C  CG  GHG ++C
Subjt:  GRKVCVRVTLDITKPLRRCIKVNLDEPLGSYWTPIRYEKLPDLCGYCGIIGHGVKDC

W9RRS1 CCHC-type domain-containing protein9.4e-0954.39Show/hide
Query:  GRKVCVRVTLDITKPLRRCIKVNLDEPLGSYWTPIRYEKLPDLCGYCGIIGHGVKDC
        G+ V VRV LDITKP+RR +K+ L +     WT +RYEKLPD C  CG  GHG ++C
Subjt:  GRKVCVRVTLDITKPLRRCIKVNLDEPLGSYWTPIRYEKLPDLCGYCGIIGHGVKDC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTAACTCGCCGGACTATCGTTTTCTCTAGGCACGAAACACATCTGTTGCGTCAATGGCTCTTGAAGATATGCTTAGCAGAAGGAACAAAGGTTGATGTGGACCGACA
AGCGGCAGAAGTCACCAGAAGATCTATGAGATTCAGTCTCATTGGGAAACTCCTATTGACCCGTTTTATCTCCGACGATAGGAGGAACAGGCGCATGTTCTTCGTTAGGG
ACCGTGGTTGTTCGACAAGTTCCTACTCGTACTCTCTAAACCAATTCGCATGGTCAAACCAACGGCCATGGAGTTTAAGTTCGTGGATTTTTGGGTGCATTTCTACGAAC
TTCCTATGGAACTTTTCAACGCTTCAATGGCGGCTCGCCTGGGGAATGCTATTGGACGGTTTGAAGAGTATGACAACGGTGGGCGTAATTTTGGATGGAAGGAAAGTATG
CGTTCGTGTGACTCTCGATATCACAAAACCTCTCCGGCGATGCATCAAAGTGAATCTTGATGAACCCTTGGGAAGCTACTGGACTCCAATCCGATATGAGAAACTACCGG
ATTTGTGTGGATACTGTGGAATCATAGGCCATGGCGTGAAAGACTGCAATTCCTACTACCTTGCTGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTAACTCGCCGGACTATCGTTTTCTCTAGGCACGAAACACATCTGTTGCGTCAATGGCTCTTGAAGATATGCTTAGCAGAAGGAACAAAGGTTGATGTGGACCGACA
AGCGGCAGAAGTCACCAGAAGATCTATGAGATTCAGTCTCATTGGGAAACTCCTATTGACCCGTTTTATCTCCGACGATAGGAGGAACAGGCGCATGTTCTTCGTTAGGG
ACCGTGGTTGTTCGACAAGTTCCTACTCGTACTCTCTAAACCAATTCGCATGGTCAAACCAACGGCCATGGAGTTTAAGTTCGTGGATTTTTGGGTGCATTTCTACGAAC
TTCCTATGGAACTTTTCAACGCTTCAATGGCGGCTCGCCTGGGGAATGCTATTGGACGGTTTGAAGAGTATGACAACGGTGGGCGTAATTTTGGATGGAAGGAAAGTATG
CGTTCGTGTGACTCTCGATATCACAAAACCTCTCCGGCGATGCATCAAAGTGAATCTTGATGAACCCTTGGGAAGCTACTGGACTCCAATCCGATATGAGAAACTACCGG
ATTTGTGTGGATACTGTGGAATCATAGGCCATGGCGTGAAAGACTGCAATTCCTACTACCTTGCTGCTTGA
Protein sequenceShow/hide protein sequence
MLTRRTIVFSRHETHLLRQWLLKICLAEGTKVDVDRQAAEVTRRSMRFSLIGKLLLTRFISDDRRNRRMFFVRDRGCSTSSYSYSLNQFAWSNQRPWSLSSWIFGCISTN
FLWNFSTLQWRLAWGMLLDGLKSMTTVGVILDGRKVCVRVTLDITKPLRRCIKVNLDEPLGSYWTPIRYEKLPDLCGYCGIIGHGVKDCNSYYLAA