; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0005500 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005500
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr6:19752888..19758755
RNA-Seq ExpressionLag0005500
SyntenyLag0005500
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7990634.1 hypothetical protein I3843_02G035100 [Carya illinoinensis]8.5e-3649.39Show/hide
Query:  KTLRTIRREKRLAEAMTHQDEALKAIRDFLQPVLPIENSRIVYAPIQATNFELKTGLIQMARDNSFKGHPSEDPHSHLRSFLEICGTVKMNGVPADAIRL
        +TLR++RR K LA A   ++   + ++D+++PV+    S I+  PI A NFELK  LI M +   F G P +DP+ HL  FLEIC TVK+NGV  D IRL
Subjt:  KTLRTIRREKRLAEAMTHQDEALKAIRDFLQPVLPIENSRIVYAPIQATNFELKTGLIQMARDNSFKGHPSEDPHSHLRSFLEICGTVKMNGVPADAIRL

Query:  RLFLFSLQDKAKDWLESVETGNISTWDELVQTFLTKCFLSAKTTKLQTEIGTFRQLDEEQLYEA
        RLF FSL+DKA+ WL+S++ G+I +W ++ + FL K F  AKT +L++EIG F+Q D E LYEA
Subjt:  RLFLFSLQDKAKDWLESVETGNISTWDELVQTFLTKCFLSAKTTKLQTEIGTFRQLDEEQLYEA

WP_217833153.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]1.5e-4560.74Show/hide
Query:  RTIRREKR--LAEAMTHQDEALKAIRDFLQPVLPIENSRIVYAPIQATNFELKTGLIQMARDNSFKGHPSEDPHSHLRSFLEICGTVKMNGVPADAIRLR
        RT RR  R  L +     +E  KAIRD+ QP LP     I+  PI   NFELK GLIQMAR+ +F+G  +EDPH HLRSFLEICGTVKMNGV  DAI+LR
Subjt:  RTIRREKR--LAEAMTHQDEALKAIRDFLQPVLPIENSRIVYAPIQATNFELKTGLIQMARDNSFKGHPSEDPHSHLRSFLEICGTVKMNGVPADAIRLR

Query:  LFLFSLQDKAKDWLESVETGNISTWDELVQTFLTKCFLSAKTTKLQTEIGTFRQLDEEQLYEA
        LF FSLQD+AKDWLE++   +I+TW+ L Q FL K F  AK+ +L+TEIGTFRQL++EQLYEA
Subjt:  LFLFSLQDKAKDWLESVETGNISTWDELVQTFLTKCFLSAKTTKLQTEIGTFRQLDEEQLYEA

XP_022843226.1 uncharacterized protein LOC111366761 [Olea europaea var. sylvestris]2.2e-3652.66Show/hide
Query:  KTLRTIRREKRLAEA-----MTHQDEALKAIRDFLQPVLPIENSRIVYAPIQATNFELKTGLIQMARDNSFKGHPSEDPHSHLRSFLEICGTVKMNGVPA
        + LR I+R +R A A       ++D   +AIRD+++PV+    S I    I A NFELK GLI M + N F G   EDP++HL SFLEIC TVKMNGV  
Subjt:  KTLRTIRREKRLAEA-----MTHQDEALKAIRDFLQPVLPIENSRIVYAPIQATNFELKTGLIQMARDNSFKGHPSEDPHSHLRSFLEICGTVKMNGVPA

Query:  DAIRLRLFLFSLQDKAKDWLESVETGNISTWDELVQTFLTKCFLSAKTTKLQTEIGTFRQLDEEQLYEA
        DAIRLRLF FSL+DKAK W +S+  G+I+TWD+L Q FLTK F  +K+ +L+ EI  F+QLD E  YEA
Subjt:  DAIRLRLFLFSLQDKAKDWLESVETGNISTWDELVQTFLTKCFLSAKTTKLQTEIGTFRQLDEEQLYEA

XP_022859866.1 uncharacterized protein LOC111380514 [Olea europaea var. sylvestris]4.2e-3554.42Show/hide
Query:  HQDEALKAIRDFLQPVLPIENSRIVYAPIQATNFELKTGLIQMARDNSFKGHPSEDPHSHLRSFLEICGTVKMNGVPADAIRLRLFLFSLQDKAKDWLES
        ++D   +AIRD+++PV+    S I    I A NFELK+GLI M + N F G   EDP++HL SFLEIC TVKMNGV  D IRLRLF FSL+D+AK W +S
Subjt:  HQDEALKAIRDFLQPVLPIENSRIVYAPIQATNFELKTGLIQMARDNSFKGHPSEDPHSHLRSFLEICGTVKMNGVPADAIRLRLFLFSLQDKAKDWLES

Query:  VETGNISTWDELVQTFLTKCFLSAKTTKLQTEIGTFRQLDEEQLYEA
        +  G+I+TWD+L Q FLTK F  +K+ +L+ EI  F+QLD E  YEA
Subjt:  VETGNISTWDELVQTFLTKCFLSAKTTKLQTEIGTFRQLDEEQLYEA

XP_022860306.1 uncharacterized protein LOC111380876 [Olea europaea var. sylvestris]3.8e-3655.78Show/hide
Query:  HQDEALKAIRDFLQPVLPIENSRIVYAPIQATNFELKTGLIQMARDNSFKGHPSEDPHSHLRSFLEICGTVKMNGVPADAIRLRLFLFSLQDKAKDWLES
        ++D   +AIRD+++PV+    S I +  I A NFELK GLI M + N F G   ED ++HL SFLEIC TVKMNGV  DAIRLRLF FSL+DKAK W +S
Subjt:  HQDEALKAIRDFLQPVLPIENSRIVYAPIQATNFELKTGLIQMARDNSFKGHPSEDPHSHLRSFLEICGTVKMNGVPADAIRLRLFLFSLQDKAKDWLES

Query:  VETGNISTWDELVQTFLTKCFLSAKTTKLQTEIGTFRQLDEEQLYEA
        +  G+I+TWD+L Q FLTK F  +K+T+L +EI  F+QLD E  YEA
Subjt:  VETGNISTWDELVQTFLTKCFLSAKTTKLQTEIGTFRQLDEEQLYEA

TrEMBL top hitse value%identityAlignment
A0A1S3UKD4 uncharacterized protein LOC1067662672.5e-3347.95Show/hide
Query:  RKCTGRHKTLRTIRREKRLAEAMTHQDEALKAIRDFLQPVLPIENSRIVYAPIQATNFELKTGLIQMARDNSFKGHPSEDPHSHLRSFLEICGTVKMNGV
        R+   R K  R I +E+     MT +    K IRD+  P        IV  PIQA NFE+K  L+Q+ + N F G  SEDP+SHL +FL IC T+K NGV
Subjt:  RKCTGRHKTLRTIRREKRLAEAMTHQDEALKAIRDFLQPVLPIENSRIVYAPIQATNFELKTGLIQMARDNSFKGHPSEDPHSHLRSFLEICGTVKMNGV

Query:  PADAIRLRLFLFSLQDKAKDWLESVETGNISTWDELVQTFLTKCFLSAKTTKLQTEIGTFRQLDEEQLYEA
          DAI LRLF FSL+DKAK+WL+S+  G+ISTW+++   F+TK F  +K+ K++ EI +F Q D E LYEA
Subjt:  PADAIRLRLFLFSLQDKAKDWLESVETGNISTWDELVQTFLTKCFLSAKTTKLQTEIGTFRQLDEEQLYEA

A0A2K3MSV7 Uncharacterized protein (Fragment)4.0e-3145.96Show/hide
Query:  RTIRREKRLAEAMTHQDEALKAIRDFLQPVLPIENSRIVYAPIQATNFELKTGLIQMARDNSFKGHPSEDPHSHLRSFLEICGTVKMNGVPADAIRLRLF
        RT RR +  + AM   +   + +RD+  P   I  S IV  P+QA NFELK GLIQM ++++F+G P+EDP++HL++F+ +  +VK NGV  +AIR+RLF
Subjt:  RTIRREKRLAEAMTHQDEALKAIRDFLQPVLPIENSRIVYAPIQATNFELKTGLIQMARDNSFKGHPSEDPHSHLRSFLEICGTVKMNGVPADAIRLRLF

Query:  LFSLQDKAKDWLESVETGNISTWDELVQTFLTKCFLSAKTTKLQTEIGTFRQLDEEQLYEA
         +SL DKA  WL+S+   +I+TW++L Q FL K F   K  K++ EI  F Q +EE L+EA
Subjt:  LFSLQDKAKDWLESVETGNISTWDELVQTFLTKCFLSAKTTKLQTEIGTFRQLDEEQLYEA

A0A6J0ZX64 LOW QUALITY PROTEIN: uncharacterized protein LOC1104129451.4e-3152.41Show/hide
Query:  EALKAIRDFLQPVLPIENSRIVYAPIQATNFELKTGLIQMARDN-SFKGHPSEDPHSHLRSFLEICGTVKMNGVPADAIRLRLFLFSLQDKAKDWLESVE
        EA +A+RD++ P++   +  I    I A NFE+K   IQM + +  F G PS+DP+SHL +FLEIC T K NGV  DAIRLRLF FSL+DKAK WL S+ 
Subjt:  EALKAIRDFLQPVLPIENSRIVYAPIQATNFELKTGLIQMARDN-SFKGHPSEDPHSHLRSFLEICGTVKMNGVPADAIRLRLFLFSLQDKAKDWLESVE

Query:  TGNISTWDELVQTFLTKCFLSAKTTKLQTEIGTFRQLDEEQLYEA
         G+I+TW++L Q FL K F  AKT K++ +I +F Q D E LYEA
Subjt:  TGNISTWDELVQTFLTKCFLSAKTTKLQTEIGTFRQLDEEQLYEA

A0A6J0ZYV0 uncharacterized protein LOC1104134132.3e-3152.41Show/hide
Query:  EALKAIRDFLQPVLPIENSRIVYAPIQATNFELKTGLIQMARDN-SFKGHPSEDPHSHLRSFLEICGTVKMNGVPADAIRLRLFLFSLQDKAKDWLESVE
        EA +A+RD+  P++   +  I    I A NFE+K   IQM + +  F G PS+DP+SHL +FLEIC T K NGV  DAIRLRLF FSL+DKAK WL S+ 
Subjt:  EALKAIRDFLQPVLPIENSRIVYAPIQATNFELKTGLIQMARDN-SFKGHPSEDPHSHLRSFLEICGTVKMNGVPADAIRLRLFLFSLQDKAKDWLESVE

Query:  TGNISTWDELVQTFLTKCFLSAKTTKLQTEIGTFRQLDEEQLYEA
         G+I+TW++L Q FL K F  AKT K++ +I +F Q D E LYEA
Subjt:  TGNISTWDELVQTFLTKCFLSAKTTKLQTEIGTFRQLDEEQLYEA

A0A7C9A3K2 Retrotrans_gag domain-containing protein (Fragment)6.1e-3248.41Show/hide
Query:  REKRLAEAMTHQDEALKAIRDFLQPVLPIENSRIVYAPIQATNFELKTGLIQMARDNSFKGHPSEDPHSHLRSFLEICGTVKMNGVPADAIRLRLFLFSL
        R KR AEA   QD   + +RD++ P      S IV   ++A NFEL   LI       F GHPSE+P++H+R FL  C T+K+NG  +DAIRLRLF FSL
Subjt:  REKRLAEAMTHQDEALKAIRDFLQPVLPIENSRIVYAPIQATNFELKTGLIQMARDNSFKGHPSEDPHSHLRSFLEICGTVKMNGVPADAIRLRLFLFSL

Query:  QDKAKDWLESVETGNISTWDELVQTFLTKCFLSAKTTKLQTEIGTFRQLDEEQLYEA
        +D+A DWL++ E  + +TWD L + FL+K F   KT KL+ EI +F Q D E LYEA
Subjt:  QDKAKDWLESVETGNISTWDELVQTFLTKCFLSAKTTKLQTEIGTFRQLDEEQLYEA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGAGATGGTCGCCGACGTGGCGGGGGAAGGTCGTCGGCACGACGGAGGTGGGTCGTCGGCGAGATGTGAGAGGTATTTCTCTCTACTGAGGGAGGTTGAACTTTG
TACTCCTTCCCCAATGAAGGGTGATCTCTCAAGATTTCCCAAGTTCTCTCAATCACATCTCTCTAAGAAGACTTTTTACAGCAACCTTGTTGTAAAAGTAATTCCCTTCC
AAGATTTTGACGATCCCACCATCAAAATCTCAGGACTCAGAGATGTTGGGATTATTTGCCAACAACTGTTGTTAAGCGATTACCGCAAGTGCACGGGTCGTCACAAGACT
CTTAGAACCATTCGTAGAGAGAAAAGATTAGCAGAAGCAATGACCCATCAAGATGAAGCTCTCAAGGCAATCAGAGACTTCTTACAGCCAGTTCTTCCCATTGAGAATTC
CAGAATTGTTTATGCTCCGATCCAAGCTACAAATTTTGAGTTAAAGACAGGATTGATTCAAATGGCGCGCGATAACTCTTTCAAGGGACATCCTTCTGAGGACCCACACT
CACATCTGCGATCATTCTTGGAAATATGTGGGACGGTGAAAATGAACGGAGTTCCGGCAGATGCTATAAGATTAAGGTTGTTCCTGTTTTCTCTACAAGACAAGGCAAAG
GATTGGCTCGAATCAGTCGAGACGGGCAATATTAGTACATGGGACGAGCTTGTCCAGACTTTTTTGACAAAATGTTTCCTGTCTGCCAAGACTACGAAGCTGCAGACTGA
GATCGGAACGTTTAGACAGCTTGACGAGGAGCAGTTGTACGAGGCATGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAGAGATGGTCGCCGACGTGGCGGGGGAAGGTCGTCGGCACGACGGAGGTGGGTCGTCGGCGAGATGTGAGAGGTATTTCTCTCTACTGAGGGAGGTTGAACTTTG
TACTCCTTCCCCAATGAAGGGTGATCTCTCAAGATTTCCCAAGTTCTCTCAATCACATCTCTCTAAGAAGACTTTTTACAGCAACCTTGTTGTAAAAGTAATTCCCTTCC
AAGATTTTGACGATCCCACCATCAAAATCTCAGGACTCAGAGATGTTGGGATTATTTGCCAACAACTGTTGTTAAGCGATTACCGCAAGTGCACGGGTCGTCACAAGACT
CTTAGAACCATTCGTAGAGAGAAAAGATTAGCAGAAGCAATGACCCATCAAGATGAAGCTCTCAAGGCAATCAGAGACTTCTTACAGCCAGTTCTTCCCATTGAGAATTC
CAGAATTGTTTATGCTCCGATCCAAGCTACAAATTTTGAGTTAAAGACAGGATTGATTCAAATGGCGCGCGATAACTCTTTCAAGGGACATCCTTCTGAGGACCCACACT
CACATCTGCGATCATTCTTGGAAATATGTGGGACGGTGAAAATGAACGGAGTTCCGGCAGATGCTATAAGATTAAGGTTGTTCCTGTTTTCTCTACAAGACAAGGCAAAG
GATTGGCTCGAATCAGTCGAGACGGGCAATATTAGTACATGGGACGAGCTTGTCCAGACTTTTTTGACAAAATGTTTCCTGTCTGCCAAGACTACGAAGCTGCAGACTGA
GATCGGAACGTTTAGACAGCTTGACGAGGAGCAGTTGTACGAGGCATGA
Protein sequenceShow/hide protein sequence
MQEMVADVAGEGRRHDGGGSSARCERYFSLLREVELCTPSPMKGDLSRFPKFSQSHLSKKTFYSNLVVKVIPFQDFDDPTIKISGLRDVGIICQQLLLSDYRKCTGRHKT
LRTIRREKRLAEAMTHQDEALKAIRDFLQPVLPIENSRIVYAPIQATNFELKTGLIQMARDNSFKGHPSEDPHSHLRSFLEICGTVKMNGVPADAIRLRLFLFSLQDKAK
DWLESVETGNISTWDELVQTFLTKCFLSAKTTKLQTEIGTFRQLDEEQLYEA