CuGenDBv2

Gene ID	Lag0005531
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrotrans_gag domain-containing protein
Genome location	chr6:20798023..20798869
RNA-Seq Expression	Lag0005531
Synteny	Lag0005531
Gene Ontology terms	GO:0006807 - nitrogen compound metabolic process (biological process) GO:0043170 - macromolecule metabolic process (biological process) GO:0044238 - primary metabolic process (biological process) GO:0003824 - catalytic activity (molecular function) GO:0005488 - binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]

3.3e-54

62.21

Show/hide

Query:  MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDSEKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVM
        MPP TS+RRR NQDG Q  TQ QSERGSSTPRGQNE ES+RFARSAQEISR +RA PSD EKMYGIERLKKLGATVFEGSTDP DT+V LNMLEKCFDVM
Subjt:  MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDSEKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVM

Query:  SCSEEQK-------------------IGRHSEAYLRKSTT----------PPHIVSAKRDEFLELKQGSLSVAEYERKYTELSRYADVIVASESDRC---
        SC +E+K                   I R ++A      T          P     AKRDEFLELKQGSLSVAEYERKYT+LSRYA++IVAS+SDRC   
Subjt:  SCSEEQK-------------------IGRHSEAYLRKSTT----------PPHIVSAKRDEFLELKQGSLSVAEYERKYTELSRYADVIVASESDRC---

Query:  ------HRFNDSVGSTG
               RF   V  TG
Subjt:  ------HRFNDSVGSTG

TYK01041.1 uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]

4.3e-54

64.5

Show/hide

Query:  MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDSEKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVM
        MPPRTSRR +QNQD TQD TQ QSERGSSTPRGQNEA S+RFARSAQEI R +R GPSD EKMYGIERLKKLGATVFEGSTDP + EV LNMLEKCFDVM
Subjt:  MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDSEKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVM

Query:  SCSEEQK-------------------IGRHSEA----------YLRKSTTPPHIVSAKRDEFLELKQGSLSVAEYERKYTELSRYADVIVASESDRCHRF
        +C +++K                   I R ++A             +   P     AKRDEF ELKQGSLSVAEYERKYTELSRY +VIVA ESDRC RF
Subjt:  SCSEEQK-------------------IGRHSEA----------YLRKSTTPPHIVSAKRDEFLELKQGSLSVAEYERKYTELSRYADVIVASESDRCHRF

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]

3.3e-54

62.21

Show/hide

Query:  MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDSEKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVM
        MPP TS+RRR NQDG Q  TQ QSERGSSTPRGQNE ES+RFARSAQEISR +RA PSD EKMYGIERLKKLGATVFEGSTDP DT+V LNMLEKCFDVM
Subjt:  MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDSEKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVM

Query:  SCSEEQK-------------------IGRHSEAYLRKSTT----------PPHIVSAKRDEFLELKQGSLSVAEYERKYTELSRYADVIVASESDRC---
        SC +E+K                   I R ++A      T          P     AKRDEFLELKQGSLSVAEYERKYT+LSRYA++IVAS+SDRC   
Subjt:  SCSEEQK-------------------IGRHSEAYLRKSTT----------PPHIVSAKRDEFLELKQGSLSVAEYERKYTELSRYADVIVASESDRC---

Query:  ------HRFNDSVGSTG
               RF   V  TG
Subjt:  ------HRFNDSVGSTG

XP_008448403.1 PREDICTED: uncharacterized protein LOC103490604 [Cucumis melo]

4.3e-54

64.5

Show/hide

Query:  MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDSEKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVM
        MPPRTSRR +QNQD TQD TQ QSERGSSTPRGQNEA S+RFARSAQEI R +R GPSD EKMYGIERLKKLGATVFEGSTDP + EV LNMLEKCFDVM
Subjt:  MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDSEKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVM

Query:  SCSEEQK-------------------IGRHSEA----------YLRKSTTPPHIVSAKRDEFLELKQGSLSVAEYERKYTELSRYADVIVASESDRCHRF
        +C +++K                   I R ++A             +   P     AKRDEF ELKQGSLSVAEYERKYTELSRY +VIVA ESDRC RF
Subjt:  SCSEEQK-------------------IGRHSEA----------YLRKSTTPPHIVSAKRDEFLELKQGSLSVAEYERKYTELSRYADVIVASESDRCHRF

XP_016899851.1 PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo]

5.0e-55

64.5

Show/hide

Query:  MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDSEKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVM
        MPPRTSRRRRQNQDG Q  TQ QSERGSSTPRGQNE  S+RFARSAQEISR +RA PSD +KMYGIE+LKKLGATVF+GSTDP D EV LNMLEKCFDVM
Subjt:  MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDSEKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVM

Query:  SCSEEQKI-------GRHSEAYLR----------------------KSTTPPHIVSAKRDEFLELKQGSLSVAEYERKYTELSRYADVIVASESDRCHRF
        SC +EQK+        + +E +L+                      +   P     AKRDEF+ELKQGSL VAEYERKYTELSRY ++IVASESDRC RF
Subjt:  SCSEEQKI-------GRHSEAYLR----------------------KSTTPPHIVSAKRDEFLELKQGSLSVAEYERKYTELSRYADVIVASESDRCHRF

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BJ07 uncharacterized protein LOC103490604

2.1e-54

64.5

Show/hide

Query:  MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDSEKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVM
        MPPRTSRR +QNQD TQD TQ QSERGSSTPRGQNEA S+RFARSAQEI R +R GPSD EKMYGIERLKKLGATVFEGSTDP + EV LNMLEKCFDVM
Subjt:  MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDSEKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVM

Query:  SCSEEQK-------------------IGRHSEA----------YLRKSTTPPHIVSAKRDEFLELKQGSLSVAEYERKYTELSRYADVIVASESDRCHRF
        +C +++K                   I R ++A             +   P     AKRDEF ELKQGSLSVAEYERKYTELSRY +VIVA ESDRC RF
Subjt:  SCSEEQK-------------------IGRHSEA----------YLRKSTTPPHIVSAKRDEFLELKQGSLSVAEYERKYTELSRYADVIVASESDRCHRF

A0A1S4DV40 uncharacterized protein LOC103487680

2.4e-55

64.5

Show/hide

Query:  MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDSEKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVM
        MPPRTSRRRRQNQDG Q  TQ QSERGSSTPRGQNE  S+RFARSAQEISR +RA PSD +KMYGIE+LKKLGATVF+GSTDP D EV LNMLEKCFDVM
Subjt:  MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDSEKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVM

Query:  SCSEEQKI-------GRHSEAYLR----------------------KSTTPPHIVSAKRDEFLELKQGSLSVAEYERKYTELSRYADVIVASESDRCHRF
        SC +EQK+        + +E +L+                      +   P     AKRDEF+ELKQGSL VAEYERKYTELSRY ++IVASESDRC RF
Subjt:  SCSEEQKI-------GRHSEAYLR----------------------KSTTPPHIVSAKRDEFLELKQGSLSVAEYERKYTELSRYADVIVASESDRCHRF

A0A5A7VMG9 Reverse transcriptase

1.6e-54

62.21

Show/hide

Query:  MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDSEKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVM
        MPP TS+RRR NQDG Q  TQ QSERGSSTPRGQNE ES+RFARSAQEISR +RA PSD EKMYGIERLKKLGATVFEGSTDP DT+V LNMLEKCFDVM
Subjt:  MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDSEKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVM

Query:  SCSEEQK-------------------IGRHSEAYLRKSTT----------PPHIVSAKRDEFLELKQGSLSVAEYERKYTELSRYADVIVASESDRC---
        SC +E+K                   I R ++A      T          P     AKRDEFLELKQGSLSVAEYERKYT+LSRYA++IVAS+SDRC   
Subjt:  SCSEEQK-------------------IGRHSEAYLRKSTT----------PPHIVSAKRDEFLELKQGSLSVAEYERKYTELSRYADVIVASESDRC---

Query:  ------HRFNDSVGSTG
               RF   V  TG
Subjt:  ------HRFNDSVGSTG

A0A5D3BMJ4 Retrotrans_gag domain-containing protein

2.1e-54

64.5

Show/hide

Query:  MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDSEKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVM
        MPPRTSRR +QNQD TQD TQ QSERGSSTPRGQNEA S+RFARSAQEI R +R GPSD EKMYGIERLKKLGATVFEGSTDP + EV LNMLEKCFDVM
Subjt:  MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDSEKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVM

Query:  SCSEEQK-------------------IGRHSEA----------YLRKSTTPPHIVSAKRDEFLELKQGSLSVAEYERKYTELSRYADVIVASESDRCHRF
        +C +++K                   I R ++A             +   P     AKRDEF ELKQGSLSVAEYERKYTELSRY +VIVA ESDRC RF
Subjt:  SCSEEQK-------------------IGRHSEA----------YLRKSTTPPHIVSAKRDEFLELKQGSLSVAEYERKYTELSRYADVIVASESDRCHRF

A0A5D3DX39 Reverse transcriptase

1.6e-54

62.21

Show/hide

Query:  MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDSEKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVM
        MPP TS+RRR NQDG Q  TQ QSERGSSTPRGQNE ES+RFARSAQEISR +RA PSD EKMYGIERLKKLGATVFEGSTDP DT+V LNMLEKCFDVM
Subjt:  MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDSEKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVM

Query:  SCSEEQK-------------------IGRHSEAYLRKSTT----------PPHIVSAKRDEFLELKQGSLSVAEYERKYTELSRYADVIVASESDRC---
        SC +E+K                   I R ++A      T          P     AKRDEFLELKQGSLSVAEYERKYT+LSRYA++IVAS+SDRC   
Subjt:  SCSEEQK-------------------IGRHSEAYLRKSTT----------PPHIVSAKRDEFLELKQGSLSVAEYERKYTELSRYADVIVASESDRC---

Query:  ------HRFNDSVGSTG
               RF   V  TG
Subjt:  ------HRFNDSVGSTG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCCACCACGTACCAGCAGACGACGCAGGCAGAATCAGGACGGGACGCAGGATCTTACCCAAAGTCAATCCGAAAGGGGATCCAGTACCCCGAGAGGTCAGAATGAGGC
AGAGAGTGATCGATTTGCTAGATCTGCGCAGGAGATCAGTAGGCAAAAGAGAGCAGGGCCTAGTGATTCGGAAAAGATGTATGGGATTGAACGGTTGAAGAAGTTAGGAG
CCACAGTGTTTGAGGGTTCCACAGATCCAACTGACACCGAGGTCTTGTTAAATATGTTGGAGAAATGCTTCGACGTGATGAGTTGTTCTGAGGAGCAAAAAATTGGCAGA
CATTCAGAGGCATATTTGAGGAAAAGTACTACCCCACCACATATTGTGAGCGCGAAGAGAGATGAGTTTCTTGAGCTGAAACAAGGGTCACTTTCAGTGGCCGAGTATGA
GAGAAAGTATACCGAGCTTTCACGGTATGCCGATGTGATTGTGGCATCTGAGAGTGACAGGTGTCACAGGTTCAACGATTCAGTAGGGTCAACAGGGGTCGTTAGAGGTG
ACGAAGACTGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCAGGGGGTCTGGGAGGGGGTGTGACAATTGGTCTCAAAACATACAATTTATTCTTCATGTTTCCATGA

mRNA sequence

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Protein sequence

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MPPRTSRRRRQNQDGTQDLTQSQSERGSSTPRGQNEAESDRFARSAQEISRQKRAGPSDSEKMYGIERLKKLGATVFEGSTDPTDTEVLLNMLEKCFDVMSCSEEQKIGR
HSEAYLRKSTTPPHIVSAKRDEFLELKQGSLSVAEYERKYTELSRYADVIVASESDRCHRFNDSVGSTGVVRGDEDCWLHAIFRAKLAGGLGGGVTIGLKTYNLFFMFP

Lag0005531 (gene) of Sponge gourd (AG-4) v1 genome