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Lag0005533 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005533
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchr6:20899489..20899791
RNA-Seq ExpressionLag0005533
SyntenyLag0005533
Gene Ontology termsGO:0000373 - Group II intron splicing (biological process)
GO:0000963 - mitochondrial RNA processing (biological process)
GO:0032981 - mitochondrial respiratory chain complex I assembly (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022141355.1 pentatricopeptide repeat-containing protein At1g66345, mitochondrial isoform X1 [Momordica charantia]5.9e-3584.04Show/hide
Query:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSG
        ML KNMV DDIAYSLIVYAKVK G IT A EVFEEM+KRGFQANSFIYTLFIGAHCREGKIEEA+ LMQEMEN+G KPYPETFNLLIEG  ++G
Subjt:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSG

XP_022141356.1 pentatricopeptide repeat-containing protein At1g66345, mitochondrial isoform X2 [Momordica charantia]5.9e-3584.04Show/hide
Query:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSG
        ML KNMV DDIAYSLIVYAKVK G IT A EVFEEM+KRGFQANSFIYTLFIGAHCREGKIEEA+ LMQEMEN+G KPYPETFNLLIEG  ++G
Subjt:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSG

XP_023550461.1 pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Cucurbita pepo subsp. pepo]4.5e-3584.27Show/hide
Query:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEG
        MLQKNM+ DDIAYSLIVYAK+KIG I  A EVF+EM+KRGFQANSFIYTLFIGAHCR+G+IEEAHCLM+EMEN+G KPYPETFNLLIEG
Subjt:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEG

XP_031740872.1 pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Cucumis sativus]9.1e-3682.98Show/hide
Query:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSG
        MLQKNMV DDIAYSLIVYAKVK G IT   EVFEEM++RGFQANSFIYTLFIG HCR GK+EEAHCLMQEMEN+G KPYPETFNLLIEG   SG
Subjt:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSG

XP_038875410.1 pentatricopeptide repeat-containing protein At1g66345, mitochondrial [Benincasa hispida]2.8e-3786.17Show/hide
Query:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSG
        MLQKNMV DDIAYSLIVYAKVK G IT A EVFEEM+KRGFQANSFIYTLFIG HCREGKIEEAHCLMQEMEN+G KPYPETF+LLIEG  +SG
Subjt:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSG

TrEMBL top hitse value%identityAlignment
A0A0A0KRP7 Uncharacterized protein4.4e-3682.98Show/hide
Query:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSG
        MLQKNMV DDIAYSLIVYAKVK G IT   EVFEEM++RGFQANSFIYTLFIG HCR GK+EEAHCLMQEMEN+G KPYPETFNLLIEG   SG
Subjt:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSG

A0A6J1CHU5 pentatricopeptide repeat-containing protein At1g66345, mitochondrial isoform X12.8e-3584.04Show/hide
Query:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSG
        ML KNMV DDIAYSLIVYAKVK G IT A EVFEEM+KRGFQANSFIYTLFIGAHCREGKIEEA+ LMQEMEN+G KPYPETFNLLIEG  ++G
Subjt:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSG

A0A6J1CIX9 pentatricopeptide repeat-containing protein At1g66345, mitochondrial isoform X22.8e-3584.04Show/hide
Query:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSG
        ML KNMV DDIAYSLIVYAKVK G IT A EVFEEM+KRGFQANSFIYTLFIGAHCREGKIEEA+ LMQEMEN+G KPYPETFNLLIEG  ++G
Subjt:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSG

A0A6J1HAX5 pentatricopeptide repeat-containing protein At1g66345, mitochondrial1.4e-3483.15Show/hide
Query:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEG
        MLQKNM+ DDIAYSLI+YAK+KIG I  A EVF+EM+KRGFQANSFIYTLFIGAHCR G+IEEAHCLM+EMEN+G KPYPETFNLLIEG
Subjt:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEG

A0A6J1JRQ4 pentatricopeptide repeat-containing protein At1g66345, mitochondrial1.1e-3484.09Show/hide
Query:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIE
        MLQKNM+ DDIAYSLIVYAK+KIG I  A EVF+EM+KRGFQANSFIYTLFIGAHCR+G+IEEAHCLM+EMEN+G KPYPETFNLLIE
Subjt:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIE

SwissProt top hitse value%identityAlignment
Q3ECH5 Pentatricopeptide repeat-containing protein At1g66345, mitochondrial5.0e-2152.13Show/hide
Query:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSG
        +L KNMV D I YS++VYAK K G +  A +VF+EM +RGF ANSF+YT+F+   C +G ++EA  L+ EME  G  PY ETFN LI G    G
Subjt:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSG

Q8S8P6 Pentatricopeptide repeat-containing protein At2g326301.3e-0830.85Show/hide
Query:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSG
        M +  +V++ + Y+L++   VK G ++ A ++F+EM +RG +++  +YT  I  +CR+G ++ A  L  E+   G  P   T+  LI+G    G
Subjt:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSG

Q9FIT7 Pentatricopeptide repeat-containing protein At5g61990, mitochondrial1.7e-0832.98Show/hide
Query:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSG
        M  K +  D  +Y +++    K+G +  A  +F+EM + G   N  IY + +G  CR G+IE+A  L+ EM   G  P   T+  +I+G   SG
Subjt:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSG

Q9FMF6 Pentatricopeptide repeat-containing protein At5g64320, mitochondrial1.7e-0836.59Show/hide
Query:  MVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLI
        +V D   Y+ ++Y   K G++  ALEV  +M  +G + N + YT+ +   C+ GKI+EA+ ++ EM   G KP    FN LI
Subjt:  MVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLI

Q9SAK0 Pentatricopeptide repeat-containing protein At1g79490, mitochondrial5.8e-0935.44Show/hide
Query:  IVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSG
        ++ +  K G +  AL +++EM K GF+ N  +YT+ I +H + GK+E A  + ++ME  G+ P P T++ L+E    SG
Subjt:  IVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSG

Arabidopsis top hitse value%identityAlignment
AT1G66345.1 Pentatricopeptide repeat (PPR) superfamily protein3.6e-2252.13Show/hide
Query:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSG
        +L KNMV D I YS++VYAK K G +  A +VF+EM +RGF ANSF+YT+F+   C +G ++EA  L+ EME  G  PY ETFN LI G    G
Subjt:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSG

AT1G79490.1 Pentatricopeptide repeat (PPR) superfamily protein4.1e-1035.44Show/hide
Query:  IVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSG
        ++ +  K G +  AL +++EM K GF+ N  +YT+ I +H + GK+E A  + ++ME  G+ P P T++ L+E    SG
Subjt:  IVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSG

AT2G32630.1 Pentatricopeptide repeat (PPR-like) superfamily protein9.1e-1030.85Show/hide
Query:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSG
        M +  +V++ + Y+L++   VK G ++ A ++F+EM +RG +++  +YT  I  +CR+G ++ A  L  E+   G  P   T+  LI+G    G
Subjt:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSG

AT5G61990.1 Pentatricopeptide repeat (PPR) superfamily protein1.2e-0932.98Show/hide
Query:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSG
        M  K +  D  +Y +++    K+G +  A  +F+EM + G   N  IY + +G  CR G+IE+A  L+ EM   G  P   T+  +I+G   SG
Subjt:  MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSG

AT5G64320.1 Pentatricopeptide repeat (PPR) superfamily protein1.2e-0936.59Show/hide
Query:  MVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLI
        +V D   Y+ ++Y   K G++  ALEV  +M  +G + N + YT+ +   C+ GKI+EA+ ++ EM   G KP    FN LI
Subjt:  MVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCAGAAAAATATGGTTTTTGATGACATTGCTTATTCACTGATTGTTTATGCTAAAGTAAAAATTGGGATTATAACTTATGCATTGGAAGTGTTTGAAGAAATGAC
CAAAAGAGGGTTTCAAGCAAATTCTTTCATTTATACCTTGTTCATTGGTGCCCATTGTAGAGAGGGAAAGATTGAGGAAGCTCATTGCTTGATGCAAGAGATGGAAAACA
TAGGTTGGAAGCCATATCCTGAAACCTTCAATCTTCTCATTGAAGGGTCTGTTTCGTCCGGAGTTCAATATTTATGTTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCAGAAAAATATGGTTTTTGATGACATTGCTTATTCACTGATTGTTTATGCTAAAGTAAAAATTGGGATTATAACTTATGCATTGGAAGTGTTTGAAGAAATGAC
CAAAAGAGGGTTTCAAGCAAATTCTTTCATTTATACCTTGTTCATTGGTGCCCATTGTAGAGAGGGAAAGATTGAGGAAGCTCATTGCTTGATGCAAGAGATGGAAAACA
TAGGTTGGAAGCCATATCCTGAAACCTTCAATCTTCTCATTGAAGGGTCTGTTTCGTCCGGAGTTCAATATTTATGTTCATGA
Protein sequenceShow/hide protein sequence
MLQKNMVFDDIAYSLIVYAKVKIGIITYALEVFEEMTKRGFQANSFIYTLFIGAHCREGKIEEAHCLMQEMENIGWKPYPETFNLLIEGSVSSGVQYLCS