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Lag0005554 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005554
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr6:21843785..21847631
RNA-Seq ExpressionLag0005554
SyntenyLag0005554
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033121.1 gag/pol protein [Cucumis melo var. makuwa]4.2e-3046.07Show/hide
Query:  LSYLTDIKG-ASSSFPNGNLGEAEFVLGIQMLGIAWNS---------------------------------FLSKKLFPKTPQEVEEMRRMP--------
        + YLTD+K   ++ F   +LGEA++VLGIQ++    N                                   LSK+  PKTPQEVE+MRR+P        
Subjt:  LSYLTDIKG-ASSSFPNGNLGEAEFVLGIQMLGIAWNS---------------------------------FLSKKLFPKTPQEVEEMRRMP--------

Query:  ------------YAIRIVSKYQSNPRFNHWKTIKNILKYSRRTRNYMLVYGTKDLILTGYTDTDFKTNKDLRKSTLVSVVTLYDGAIVWHS
                    YA+RIVS+YQSN   +HW  +K ILKY RRTR+YMLVYG KDLILTGYTD+DF+TNKD RKST  SV TL  GAIVW S
Subjt:  ------------YAIRIVSKYQSNPRFNHWKTIKNILKYSRRTRNYMLVYGTKDLILTGYTDTDFKTNKDLRKSTLVSVVTLYDGAIVWHS
KAA0047674.1 gag/pol protein [Cucumis melo var. makuwa]4.5e-3251.52Show/hide
Query:  LSYLTDIKG-ASSSFPNGNLGEAEFVLGIQMLGIAWNS-------FLSKKLFPKTPQEVEEMRRMP--------------------YAIRIVSKYQSNPR
        + YLTD+K   ++ F   +LGEA++VLGIQ++    N         LSK+  PKTPQEVE+MRR+P                    YA+ IV++YQSNP 
Subjt:  LSYLTDIKG-ASSSFPNGNLGEAEFVLGIQMLGIAWNS-------FLSKKLFPKTPQEVEEMRRMP--------------------YAIRIVSKYQSNPR

Query:  FNHWKTIKNILKYSRRTRNYMLVYGTKDLILTGYTDTDFKTNKDLRKSTLVSVVTLYDGAIVWHS
         +HW T+K ILKY RRTR+YMLVYG KDLILTGYTD+DF+ +KD RKST  SV TL  GA+VW S
Subjt:  FNHWKTIKNILKYSRRTRNYMLVYGTKDLILTGYTDTDFKTNKDLRKSTLVSVVTLYDGAIVWHS
KAA0061170.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-3046.03Show/hide
Query:  YLTDIKG-ASSSFPNGNLGEAEFVLGIQMLGIAWNS---------------------------------FLSKKLFPKTPQEVEEMRRMP----------
        YLTD+K   ++ F   +LGEA++VLGIQ++    N                                   LSK+  PKTPQEVE+MRR+P          
Subjt:  YLTDIKG-ASSSFPNGNLGEAEFVLGIQMLGIAWNS---------------------------------FLSKKLFPKTPQEVEEMRRMP----------

Query:  ----------YAIRIVSKYQSNPRFNHWKTIKNILKYSRRTRNYMLVYGTKDLILTGYTDTDFKTNKDLRKSTLVSVVTLYDGAIVWHS
                  YA+ IVS+YQSNP  +HW T+K ILKY RRTR+YMLVYG KDLILTGYTD+DF+T+KD RKST  SV TL +GA+VW S
Subjt:  ----------YAIRIVSKYQSNPRFNHWKTIKNILKYSRRTRNYMLVYGTKDLILTGYTDTDFKTNKDLRKSTLVSVVTLYDGAIVWHS
KAA0062886.1 gag/pol protein [Cucumis melo var. makuwa]4.2e-3045.55Show/hide
Query:  LSYLTDIKG-ASSSFPNGNLGEAEFVLGIQMLGIAWNS---------------------------------FLSKKLFPKTPQEVEEMRRMPYA------
        + YLTD+K   ++ F   +LGEA++VLGIQ++    N                                   LSK+  PKTPQEVE+MRR+PYA      
Subjt:  LSYLTDIKG-ASSSFPNGNLGEAEFVLGIQMLGIAWNS---------------------------------FLSKKLFPKTPQEVEEMRRMPYA------

Query:  --------------IRIVSKYQSNPRFNHWKTIKNILKYSRRTRNYMLVYGTKDLILTGYTDTDFKTNKDLRKSTLVSVVTLYDGAIVWHS
                      + IVS+YQSNP  +HW TIK ILKY RRTR+YML+YG KDLILTGYTD+DF+T+KD RKST  SV TL  GA+VW S
Subjt:  --------------IRIVSKYQSNPRFNHWKTIKNILKYSRRTRNYMLVYGTKDLILTGYTDTDFKTNKDLRKSTLVSVVTLYDGAIVWHS
TYK16417.1 gag/pol protein [Cucumis melo var. makuwa]9.4e-3045.03Show/hide
Query:  LSYLTDIKG-ASSSFPNGNLGEAEFVLGIQMLGIAWNS---------------------------------FLSKKLFPKTPQEVEEMRRMPYA------
        + YLTD+K   ++ F   +LGEA++VLGIQ++    N                                   LSK+  PKTPQEVE+MRR+PYA      
Subjt:  LSYLTDIKG-ASSSFPNGNLGEAEFVLGIQMLGIAWNS---------------------------------FLSKKLFPKTPQEVEEMRRMPYA------

Query:  --------------IRIVSKYQSNPRFNHWKTIKNILKYSRRTRNYMLVYGTKDLILTGYTDTDFKTNKDLRKSTLVSVVTLYDGAIVWHS
                      + IVS+YQSNP  +HW  +K ILKY RRTR+YMLVYG KDLILTGYTD+DF+T+KD RKST  SV TL  GA+VW S
Subjt:  --------------IRIVSKYQSNPRFNHWKTIKNILKYSRRTRNYMLVYGTKDLILTGYTDTDFKTNKDLRKSTLVSVVTLYDGAIVWHS
TrEMBL top hitse value%identityAlignment
A0A5A7TXG9 Gag/pol protein2.2e-3251.52Show/hide
Query:  LSYLTDIKG-ASSSFPNGNLGEAEFVLGIQMLGIAWNS-------FLSKKLFPKTPQEVEEMRRMP--------------------YAIRIVSKYQSNPR
        + YLTD+K   ++ F   +LGEA++VLGIQ++    N         LSK+  PKTPQEVE+MRR+P                    YA+ IV++YQSNP 
Subjt:  LSYLTDIKG-ASSSFPNGNLGEAEFVLGIQMLGIAWNS-------FLSKKLFPKTPQEVEEMRRMP--------------------YAIRIVSKYQSNPR

Query:  FNHWKTIKNILKYSRRTRNYMLVYGTKDLILTGYTDTDFKTNKDLRKSTLVSVVTLYDGAIVWHS
         +HW T+K ILKY RRTR+YMLVYG KDLILTGYTD+DF+ +KD RKST  SV TL  GA+VW S
Subjt:  FNHWKTIKNILKYSRRTRNYMLVYGTKDLILTGYTDTDFKTNKDLRKSTLVSVVTLYDGAIVWHS
A0A5A7V1F5 Gag/pol protein5.4e-3146.03Show/hide
Query:  YLTDIKG-ASSSFPNGNLGEAEFVLGIQMLGIAWNS---------------------------------FLSKKLFPKTPQEVEEMRRMP----------
        YLTD+K   ++ F   +LGEA++VLGIQ++    N                                   LSK+  PKTPQEVE+MRR+P          
Subjt:  YLTDIKG-ASSSFPNGNLGEAEFVLGIQMLGIAWNS---------------------------------FLSKKLFPKTPQEVEEMRRMP----------

Query:  ----------YAIRIVSKYQSNPRFNHWKTIKNILKYSRRTRNYMLVYGTKDLILTGYTDTDFKTNKDLRKSTLVSVVTLYDGAIVWHS
                  YA+ IVS+YQSNP  +HW T+K ILKY RRTR+YMLVYG KDLILTGYTD+DF+T+KD RKST  SV TL +GA+VW S
Subjt:  ----------YAIRIVSKYQSNPRFNHWKTIKNILKYSRRTRNYMLVYGTKDLILTGYTDTDFKTNKDLRKSTLVSVVTLYDGAIVWHS
A0A5A7V8W0 Gag/pol protein2.0e-3045.55Show/hide
Query:  LSYLTDIKG-ASSSFPNGNLGEAEFVLGIQMLGIAWNS---------------------------------FLSKKLFPKTPQEVEEMRRMPYA------
        + YLTD+K   ++ F   +LGEA++VLGIQ++    N                                   LSK+  PKTPQEVE+MRR+PYA      
Subjt:  LSYLTDIKG-ASSSFPNGNLGEAEFVLGIQMLGIAWNS---------------------------------FLSKKLFPKTPQEVEEMRRMPYA------

Query:  --------------IRIVSKYQSNPRFNHWKTIKNILKYSRRTRNYMLVYGTKDLILTGYTDTDFKTNKDLRKSTLVSVVTLYDGAIVWHS
                      + IVS+YQSNP  +HW TIK ILKY RRTR+YML+YG KDLILTGYTD+DF+T+KD RKST  SV TL  GA+VW S
Subjt:  --------------IRIVSKYQSNPRFNHWKTIKNILKYSRRTRNYMLVYGTKDLILTGYTDTDFKTNKDLRKSTLVSVVTLYDGAIVWHS
A0A5D3CWZ1 Gag/pol protein4.6e-3045.03Show/hide
Query:  LSYLTDIKG-ASSSFPNGNLGEAEFVLGIQMLGIAWNS---------------------------------FLSKKLFPKTPQEVEEMRRMPYA------
        + YLTD+K   ++ F   +LGEA++VLGIQ++    N                                   LSK+  PKTPQEVE+MRR+PYA      
Subjt:  LSYLTDIKG-ASSSFPNGNLGEAEFVLGIQMLGIAWNS---------------------------------FLSKKLFPKTPQEVEEMRRMPYA------

Query:  --------------IRIVSKYQSNPRFNHWKTIKNILKYSRRTRNYMLVYGTKDLILTGYTDTDFKTNKDLRKSTLVSVVTLYDGAIVWHS
                      + IVS+YQSNP  +HW  +K ILKY RRTR+YMLVYG KDLILTGYTD+DF+T+KD RKST  SV TL  GA+VW S
Subjt:  --------------IRIVSKYQSNPRFNHWKTIKNILKYSRRTRNYMLVYGTKDLILTGYTDTDFKTNKDLRKSTLVSVVTLYDGAIVWHS
A0A5D3CZY3 Gag/pol protein2.0e-3046.07Show/hide
Query:  LSYLTDIKG-ASSSFPNGNLGEAEFVLGIQMLGIAWNS---------------------------------FLSKKLFPKTPQEVEEMRRMP--------
        + YLTD+K   ++ F   +LGEA++VLGIQ++    N                                   LSK+  PKTPQEVE+MRR+P        
Subjt:  LSYLTDIKG-ASSSFPNGNLGEAEFVLGIQMLGIAWNS---------------------------------FLSKKLFPKTPQEVEEMRRMP--------

Query:  ------------YAIRIVSKYQSNPRFNHWKTIKNILKYSRRTRNYMLVYGTKDLILTGYTDTDFKTNKDLRKSTLVSVVTLYDGAIVWHS
                    YA+RIVS+YQSN   +HW  +K ILKY RRTR+YMLVYG KDLILTGYTD+DF+TNKD RKST  SV TL  GAIVW S
Subjt:  ------------YAIRIVSKYQSNPRFNHWKTIKNILKYSRRTRNYMLVYGTKDLILTGYTDTDFKTNKDLRKSTLVSVVTLYDGAIVWHS
SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-946.0e-1136.13Show/hide
Query:  LSKKLFPKTPQEVEEMRRMPY--------------------AIRIVSKYQSNPRFNHWKTIKNILKYSRRTRNYMLVYGTKDLILTGYTDTDFKTNKDLR
        LSKK+ P T +E   M ++PY                    A+ +VS++  NP   HW+ +K IL+Y R T    L +G  D IL GYTD D   + D R
Subjt:  LSKKLFPKTPQEVEEMRRMPY--------------------AIRIVSKYQSNPRFNHWKTIKNILKYSRRTRNYMLVYGTKDLILTGYTDTDFKTNKDLR

Query:  KSTLVSVVTLYDGAIVWHS
        KS+   + T   GAI W S
Subjt:  KSTLVSVVTLYDGAIVWHS
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATCCCAGACCTTTCCTACTGCAAATCGAGCCCAGACCTCTCCTCTTCCTCTACCTCACCACCTCCACCGCTGCCCCCCCACCGGATCGGTCTGCAGCTCGACCC
TAGACCTCTCCTACTGCAAATCGAGCCCAGACCCCTCCTCTGGCAAACCCTAACTTCCCTTAGCTCCGTCTTCCCTCCCCTCTGCAAGCTGCCACGATCAACCTCCTTGT
TCGCAGCCGCCATGAATCCGGTAGTTGTGACCCACGAAGGAATGAATGAGGTCTCTAGATCTGGAACAAAGTCGTTTAGATGGGTCATGGACGGTTTGATTCAGCGAACG
ATTAATGATCTCAGTCTCAAATCGGAATTCAGCGAACGAAATCGTTCAGATGAGCCCTTTATTTTAGCGTCGAAACAAGGAAAGAACGGGAAAGATGGTGAGATTCTGAA
CAAGATCAAGGTCCTTTTGATTGCTGGAATTTTCTGCAAACATCAAGGGAAAAGGCGAAACGTTCAAGAATTTCTACAAGGCGTTGACTGCATTGCACACTGTAATAGGC
AACCCCAAAGGAAACGAGAAGTGGATACTTCTTCAATTCACAAGAGAATAAAGAATTTGTATCGACAAATGCTAAATTCTCAGAATAAGTCCACATCAAAAATCATAAAC
CACAAGAGTAAAGTCAGTTTAAGTTATCTTACTGACATTAAAGGAGCTAGCAGCTCATTTCCAAATGGAAATTTGGGAGAAGCCGAGTTTGTTCTTGGGATCCAAATGTT
AGGAATCGCGTGGAATTCATTTTTGTCTAAGAAACTGTTTCCTAAGACACCTCAAGAAGTTGAGGAGATGAGACGAATGCCCTATGCAATACGGATTGTCAGTAAGTATC
AATCTAATCCAAGATTTAACCATTGGAAAACCATTAAGAATATCCTCAAGTATTCGAGGAGAACGAGGAACTATATGCTCGTGTATGGGACTAAGGATTTGATCCTTACA
GGATACACTGACACAGATTTTAAAACTAATAAGGATTTGAGGAAATCTACATTAGTATCTGTGGTCACTCTTTACGATGGAGCTATAGTATGGCATAGTTACAGTTTGAC
CGTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGATCCCAGACCTTTCCTACTGCAAATCGAGCCCAGACCTCTCCTCTTCCTCTACCTCACCACCTCCACCGCTGCCCCCCCACCGGATCGGTCTGCAGCTCGACCC
TAGACCTCTCCTACTGCAAATCGAGCCCAGACCCCTCCTCTGGCAAACCCTAACTTCCCTTAGCTCCGTCTTCCCTCCCCTCTGCAAGCTGCCACGATCAACCTCCTTGT
TCGCAGCCGCCATGAATCCGGTAGTTGTGACCCACGAAGGAATGAATGAGGTCTCTAGATCTGGAACAAAGTCGTTTAGATGGGTCATGGACGGTTTGATTCAGCGAACG
ATTAATGATCTCAGTCTCAAATCGGAATTCAGCGAACGAAATCGTTCAGATGAGCCCTTTATTTTAGCGTCGAAACAAGGAAAGAACGGGAAAGATGGTGAGATTCTGAA
CAAGATCAAGGTCCTTTTGATTGCTGGAATTTTCTGCAAACATCAAGGGAAAAGGCGAAACGTTCAAGAATTTCTACAAGGCGTTGACTGCATTGCACACTGTAATAGGC
AACCCCAAAGGAAACGAGAAGTGGATACTTCTTCAATTCACAAGAGAATAAAGAATTTGTATCGACAAATGCTAAATTCTCAGAATAAGTCCACATCAAAAATCATAAAC
CACAAGAGTAAAGTCAGTTTAAGTTATCTTACTGACATTAAAGGAGCTAGCAGCTCATTTCCAAATGGAAATTTGGGAGAAGCCGAGTTTGTTCTTGGGATCCAAATGTT
AGGAATCGCGTGGAATTCATTTTTGTCTAAGAAACTGTTTCCTAAGACACCTCAAGAAGTTGAGGAGATGAGACGAATGCCCTATGCAATACGGATTGTCAGTAAGTATC
AATCTAATCCAAGATTTAACCATTGGAAAACCATTAAGAATATCCTCAAGTATTCGAGGAGAACGAGGAACTATATGCTCGTGTATGGGACTAAGGATTTGATCCTTACA
GGATACACTGACACAGATTTTAAAACTAATAAGGATTTGAGGAAATCTACATTAGTATCTGTGGTCACTCTTTACGATGGAGCTATAGTATGGCATAGTTACAGTTTGAC
CGTATAG
Protein sequenceShow/hide protein sequence
MAIPDLSYCKSSPDLSSSSTSPPPPLPPHRIGLQLDPRPLLLQIEPRPLLWQTLTSLSSVFPPLCKLPRSTSLFAAAMNPVVVTHEGMNEVSRSGTKSFRWVMDGLIQRT
INDLSLKSEFSERNRSDEPFILASKQGKNGKDGEILNKIKVLLIAGIFCKHQGKRRNVQEFLQGVDCIAHCNRQPQRKREVDTSSIHKRIKNLYRQMLNSQNKSTSKIIN
HKSKVSLSYLTDIKGASSSFPNGNLGEAEFVLGIQMLGIAWNSFLSKKLFPKTPQEVEEMRRMPYAIRIVSKYQSNPRFNHWKTIKNILKYSRRTRNYMLVYGTKDLILT
GYTDTDFKTNKDLRKSTLVSVVTLYDGAIVWHSYSLTV