CuGenDBv2

Gene ID	Lag0005562
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	60S ribosomal protein L38
Genome location	chr6:22118397..22120735
RNA-Seq Expression	Lag0005562
Synteny	Lag0005562
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0016020 - membrane (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR002675 - Ribosomal protein L38e IPR038464 - Ribosomal protein L38e superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6597297.1 hypothetical protein SDJN03_10477, partial [Cucurbita argyrosperma subsp. sororia]

9.9e-27

56.74

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Query:  VFCLLHNIRMAIHIQEDLSQNVQGPSEFITGSFDSIK--------------------VKLLELFSF----------WIIITEG------RKRINVMFNPR
        + CL+HNIR AIHI EDLSQNVQ PSE +TGSF+SIK                    V L ++F             +I+  G       K +NVMFNPR
Subjt:  VFCLLHNIRMAIHIQEDLSQNVQGPSEFITGSFDSIK--------------------VKLLELFSF----------WIIITEG------RKRINVMFNPR

Query:  LTPRWLVEEVKTNTTIQEVILVRTTLAWITGIILLIATLMG
         TPRWLVEEVK NTTIQEVILVRTTLAWITGIILLIATLMG
Subjt:  LTPRWLVEEVKTNTTIQEVILVRTTLAWITGIILLIATLMG

KAG7028765.1 hypothetical protein SDJN02_09946 [Cucurbita argyrosperma subsp. argyrosperma]

9.9e-27

56.74

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Query:  VFCLLHNIRMAIHIQEDLSQNVQGPSEFITGSFDSIK--------------------VKLLELFSF----------WIIITEG------RKRINVMFNPR
        + CL+HNIR AIHI EDLSQNVQ PSE +TGSF+SIK                    V L ++F             +I+  G       K +NVMFNPR
Subjt:  VFCLLHNIRMAIHIQEDLSQNVQGPSEFITGSFDSIK--------------------VKLLELFSF----------WIIITEG------RKRINVMFNPR

Query:  LTPRWLVEEVKTNTTIQEVILVRTTLAWITGIILLIATLMG
         TPRWLVEEVK NTTIQEVILVRTTLAWITGIILLIATLMG
Subjt:  LTPRWLVEEVKTNTTIQEVILVRTTLAWITGIILLIATLMG

XP_022924693.1 uncharacterized protein LOC111432114 [Cucurbita moschata]

1.3e-26

56.03

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Query:  VFCLLHNIRMAIHIQEDLSQNVQGPSEFITGSFDSIK--------------------VKLLELFSF----------WIIITEG------RKRINVMFNPR
        + CL+HNI+ AIHI EDLSQNVQ PSE ITGSFDSIK                    V L ++F             +++  G       K +NV+FNPR
Subjt:  VFCLLHNIRMAIHIQEDLSQNVQGPSEFITGSFDSIK--------------------VKLLELFSF----------WIIITEG------RKRINVMFNPR

Query:  LTPRWLVEEVKTNTTIQEVILVRTTLAWITGIILLIATLMG
         TPRWLVEEVK NTTIQEVILVRTTLAWITGIILLIATLMG
Subjt:  LTPRWLVEEVKTNTTIQEVILVRTTLAWITGIILLIATLMG

XP_022974872.1 uncharacterized protein LOC111473645 [Cucurbita maxima]

1.3e-26

57.45

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Query:  VFCLLHNIRMAIHIQEDLSQNVQGPSEFITGSFDSIK--------------------VKLLELFSF----------WIIITEG------RKRINVMFNPR
        + CL+HNIR AIHI EDLSQNVQ PSE ITGSF+SIK                    V L ++F             +I   G       K +NVMFNPR
Subjt:  VFCLLHNIRMAIHIQEDLSQNVQGPSEFITGSFDSIK--------------------VKLLELFSF----------WIIITEG------RKRINVMFNPR

Query:  LTPRWLVEEVKTNTTIQEVILVRTTLAWITGIILLIATLMG
         TPRWLVEEVK NTTIQEVILVRTTLAWITGIILLIATLMG
Subjt:  LTPRWLVEEVKTNTTIQEVILVRTTLAWITGIILLIATLMG

XP_022980329.1 uncharacterized protein LOC111479729 [Cucurbita maxima]

1.7e-26

56.03

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Query:  VFCLLHNIRMAIHIQEDLSQNVQGPSEFITGSFDSIK--------------------VKLLELFSF----------WIIITEGR------KRINVMFNPR
        + CL+HNI+ AIHI EDLSQNVQ PSE ITGSFDSIK                    V L ++F             +++  G       K +NV+FNPR
Subjt:  VFCLLHNIRMAIHIQEDLSQNVQGPSEFITGSFDSIK--------------------VKLLELFSF----------WIIITEGR------KRINVMFNPR

Query:  LTPRWLVEEVKTNTTIQEVILVRTTLAWITGIILLIATLMG
         TPRWLVEEVK NTTIQEVILVRTTLAWITGIILLIATLMG
Subjt:  LTPRWLVEEVKTNTTIQEVILVRTTLAWITGIILLIATLMG

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CZX7 uncharacterized protein LOC111016092

2.5e-23

51.77

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Query:  VFCLLHNIRMAIHIQEDLSQNVQGPSEFITGSFDSIK--------------------VKLLELFSFW-----------IIITE-----GRKRINVMFNPR
        + CL HN R A+HI EDLSQNV+ P+E I+GSF+SIK                    V L ++F              I+ +E       K +NV+F PR
Subjt:  VFCLLHNIRMAIHIQEDLSQNVQGPSEFITGSFDSIK--------------------VKLLELFSFW-----------IIITE-----GRKRINVMFNPR

Query:  LTPRWLVEEVKTNTTIQEVILVRTTLAWITGIILLIATLMG
        L PRWLVE+VK NTTIQEVILVRTTLAWITGIILLIATLMG
Subjt:  LTPRWLVEEVKTNTTIQEVILVRTTLAWITGIILLIATLMG

A0A6J1ED79 uncharacterized protein LOC111432114

6.3e-27

56.03

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Query:  VFCLLHNIRMAIHIQEDLSQNVQGPSEFITGSFDSIK--------------------VKLLELFSF----------WIIITEG------RKRINVMFNPR
        + CL+HNI+ AIHI EDLSQNVQ PSE ITGSFDSIK                    V L ++F             +++  G       K +NV+FNPR
Subjt:  VFCLLHNIRMAIHIQEDLSQNVQGPSEFITGSFDSIK--------------------VKLLELFSF----------WIIITEG------RKRINVMFNPR

Query:  LTPRWLVEEVKTNTTIQEVILVRTTLAWITGIILLIATLMG
         TPRWLVEEVK NTTIQEVILVRTTLAWITGIILLIATLMG
Subjt:  LTPRWLVEEVKTNTTIQEVILVRTTLAWITGIILLIATLMG

A0A6J1GD87 uncharacterized protein LOC111452887

1.1e-26

58.27

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Query:  CLLHNIRMAIHIQEDLSQNVQGPSEFITGSFDSIK--------------------VKLLELFSF----------WIIITEG------RKRINVMFNPRLT
        CL+HNIR AIHI EDLSQNVQ PSE ITGSF+SIK                    V L ++F             +I   G       K +NVMFNPR T
Subjt:  CLLHNIRMAIHIQEDLSQNVQGPSEFITGSFDSIK--------------------VKLLELFSF----------WIIITEG------RKRINVMFNPRLT

Query:  PRWLVEEVKTNTTIQEVILVRTTLAWITGIILLIATLMG
        PRWLVEEVK NTTIQEVILVRTTLAWITGIILLIATLMG
Subjt:  PRWLVEEVKTNTTIQEVILVRTTLAWITGIILLIATLMG

A0A6J1IBF9 uncharacterized protein LOC111473645

6.3e-27

57.45

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Query:  VFCLLHNIRMAIHIQEDLSQNVQGPSEFITGSFDSIK--------------------VKLLELFSF----------WIIITEG------RKRINVMFNPR
        + CL+HNIR AIHI EDLSQNVQ PSE ITGSF+SIK                    V L ++F             +I   G       K +NVMFNPR
Subjt:  VFCLLHNIRMAIHIQEDLSQNVQGPSEFITGSFDSIK--------------------VKLLELFSF----------WIIITEG------RKRINVMFNPR

Query:  LTPRWLVEEVKTNTTIQEVILVRTTLAWITGIILLIATLMG
         TPRWLVEEVK NTTIQEVILVRTTLAWITGIILLIATLMG
Subjt:  LTPRWLVEEVKTNTTIQEVILVRTTLAWITGIILLIATLMG

A0A6J1IYZ3 uncharacterized protein LOC111479729

8.2e-27

56.03

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Query:  VFCLLHNIRMAIHIQEDLSQNVQGPSEFITGSFDSIK--------------------VKLLELFSF----------WIIITEGR------KRINVMFNPR
        + CL+HNI+ AIHI EDLSQNVQ PSE ITGSFDSIK                    V L ++F             +++  G       K +NV+FNPR
Subjt:  VFCLLHNIRMAIHIQEDLSQNVQGPSEFITGSFDSIK--------------------VKLLELFSF----------WIIITEGR------KRINVMFNPR

Query:  LTPRWLVEEVKTNTTIQEVILVRTTLAWITGIILLIATLMG
         TPRWLVEEVK NTTIQEVILVRTTLAWITGIILLIATLMG
Subjt:  LTPRWLVEEVKTNTTIQEVILVRTTLAWITGIILLIATLMG

SwissProt top hits

e value

%identity

Alignment

O22860 60S ribosomal protein L38

1.0e-18

77.59

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Query:  KQIHEIKDFLLTARRKDVHSVKIKRNRDVVKFKVRCSKYLYTLCVFDSENAWRTESSL
        KQIHEIKDFLLTARRKD  SVKIKR++D+VKFKVRCS+YLYTLCVFD E A + + SL
Subjt:  KQIHEIKDFLLTARRKDVHSVKIKRNRDVVKFKVRCSKYLYTLCVFDSENAWRTESSL

P46291 60S ribosomal protein L38

1.5e-17

75.86

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Query:  KQIHEIKDFLLTARRKDVHSVKIKRNRDVVKFKVRCSKYLYTLCVFDSENAWRTESSL
        KQIHEIKDFLLTARRKD  +VKIK+N+D+VKFKVRCSKYLYTLCV D E A + + SL
Subjt:  KQIHEIKDFLLTARRKDVHSVKIKRNRDVVKFKVRCSKYLYTLCVFDSENAWRTESSL

P63173 60S ribosomal protein L38

2.6e-14

67.24

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Query:  KQIHEIKDFLLTARRKDVHSVKIKRNRDVVKFKVRCSKYLYTLCVFDSENAWRTESSL
        ++I EIKDFLLTARRKD  SVKIK+N+D VKFKVRCS+YLYTL + D E A + + SL
Subjt:  KQIHEIKDFLLTARRKDVHSVKIKRNRDVVKFKVRCSKYLYTLCVFDSENAWRTESSL

Q32PB9 60S ribosomal protein L38

2.6e-14

67.24

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Query:  KQIHEIKDFLLTARRKDVHSVKIKRNRDVVKFKVRCSKYLYTLCVFDSENAWRTESSL
        ++I EIKDFLLTARRKD  SVKIK+N+D VKFKVRCS+YLYTL + D E A + + SL
Subjt:  KQIHEIKDFLLTARRKDVHSVKIKRNRDVVKFKVRCSKYLYTLCVFDSENAWRTESSL

Q95V84 60S ribosomal protein L38

6.2e-16

72.41

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Query:  KQIHEIKDFLLTARRKDVHSVKIKRNRDVVKFKVRCSKYLYTLCVFDSENAWRTESSL
        KQIHEIKDFLLTARRKD  SVKIK+N+D VKFKVRCS+YLYTL + D E A + + SL
Subjt:  KQIHEIKDFLLTARRKDVHSVKIKRNRDVVKFKVRCSKYLYTLCVFDSENAWRTESSL

Arabidopsis top hits

e value

%identity

Alignment

AT2G43460.1 Ribosomal L38e protein family

7.3e-20

77.59

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Query:  KQIHEIKDFLLTARRKDVHSVKIKRNRDVVKFKVRCSKYLYTLCVFDSENAWRTESSL
        KQIHEIKDFLLTARRKD  SVKIKR++D+VKFKVRCS+YLYTLCVFD E A + + SL
Subjt:  KQIHEIKDFLLTARRKDVHSVKIKRNRDVVKFKVRCSKYLYTLCVFDSENAWRTESSL

AT3G24160.1 putative type 1 membrane protein

7.9e-06

29.68

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Query:  FDSENAWRTESSLVVFCLLHNIRMAIHIQEDLSQNVQGPSEFITGSF-------------------DSIKVKLLELFSFWIIITEGR--------KRINV
        F+ E     + +L +  L  NIR A+ + +DLS  +   +E   G F                   D +   L +LF+      +G+        +R+N 
Subjt:  FDSENAWRTESSLVVFCLLHNIRMAIHIQEDLSQNVQGPSEFITGSF-------------------DSIKVKLLELFSFWIIITEGR--------KRINV

Query:  -------MFNPRLTPRWL--VEEVKTNTTIQEVILVRTTLAWITGIILLIATLMG
                 + R + R +  VE + +   I EVILVR TLAW+TGIILLIAT++G
Subjt:  -------MFNPRLTPRWL--VEEVKTNTTIQEVILVRTTLAWITGIILLIATLMG

AT3G59540.1 Ribosomal L38e protein family

7.3e-20

77.59

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Query:  KQIHEIKDFLLTARRKDVHSVKIKRNRDVVKFKVRCSKYLYTLCVFDSENAWRTESSL
        KQIHEIKDFLLTARRKD  SVKIKR++D+VKFKVRCS+YLYTLCVFD E A + + SL
Subjt:  KQIHEIKDFLLTARRKDVHSVKIKRNRDVVKFKVRCSKYLYTLCVFDSENAWRTESSL

Sequences

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CDS sequence

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ATGGTTGAAACTCCCTTTTGTGGACAGCTGAAGCAAATACATGAGATTAAAGACTTTCTTCTCACTGCAAGAAGAAAGGATGTCCATTCTGTCAAAATTAAGAGGAACAG
AGATGTAGTCAAGTTTAAGGTTCGCTGCTCTAAGTACCTTTACACGCTCTGTGTGTTTGACTCTGAGAATGCATGGAGGACAGAGAGTTCATTGGTAGTTTTTTGTCTCC
TTCACAATATTAGAATGGCTATACACATTCAAGAGGATTTGTCACAAAATGTGCAAGGTCCATCTGAGTTCATCACTGGCTCTTTCGATAGCATCAAGGTCAAATTGTTG
GAGTTGTTTTCTTTTTGGATCATCATCACAGAAGGCAGAAAAAGGATTAATGTGATGTTTAACCCTCGGTTGACTCCACGTTGGTTGGTGGAAGAAGTCAAAACTAATAC
AACTATTCAAGAAGTGATATTGGTTAGGACAACCCTTGCCTGGATCACAGGAATCATCCTTTTGATTGCTACTCTTATGGGATACATAGTTGGTGCCTTGTGTCTTTGGT
TTGCTAATGGCATTCCTCTGCACCTTGTTCCTTTTCCACTTTTCTGGAGATGTGGTGCATTCTTTGGAACTGGTGTTGCATTCAACTTGTTAGATGATCTTCTGTTATGA

mRNA sequence

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Protein sequence

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MVETPFCGQLKQIHEIKDFLLTARRKDVHSVKIKRNRDVVKFKVRCSKYLYTLCVFDSENAWRTESSLVVFCLLHNIRMAIHIQEDLSQNVQGPSEFITGSFDSIKVKLL
ELFSFWIIITEGRKRINVMFNPRLTPRWLVEEVKTNTTIQEVILVRTTLAWITGIILLIATLMGYIVGALCLWFANGIPLHLVPFPLFWRCGAFFGTGVAFNLLDDLLL

Lag0005562 (gene) of Sponge gourd (AG-4) v1 genome