; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0005628 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005628
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr6:24330752..24331402
RNA-Seq ExpressionLag0005628
SyntenyLag0005628
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PNX92710.1 ribonuclease H [Trifolium pratense]1.5e-5649.29Show/hide
Query:  ILKVYEVATGQVFNFDKSEIAFGTGVTNEVKDFLANILKVKIVQDHGKYLGCSSSLSRNKKASLNYITSKVQKVLQGWKAKLFSTTGKEVLIKVVAQAIP
        IL+VY+ A+GQV N DKSE +F   V NE K+ + N++  K V+   +YLG      R+KK   + +  +V K ++GWK +  S  GKE LIK VAQAIP
Subjt:  ILKVYEVATGQVFNFDKSEIAFGTGVTNEVKDFLANILKVKIVQDHGKYLGCSSSLSRNKKASLNYITSKVQKVLQGWKAKLFSTTGKEVLIKVVAQAIP

Query:  TYTLSCFKLPQGCCHDLNRLMANFWWGSSEQGRKIHWLKWETMTKLKDRGGMSFRDISLFNQALLAKHTWRLLHRPQSLMAQILKAIYYPQEDFLKATLG
         Y LSC+K+P GCC D+N ++A FWWGS+E+ RKIHW+ WE +++ K+ GGM FR I  FN+ALL KH WRL     SL+ +I K+ YYP+ DF+ A  G
Subjt:  TYTLSCFKLPQGCCHDLNRLMANFWWGSSEQGRKIHWLKWETMTKLKDRGGMSFRDISLFNQALLAKHTWRLLHRPQSLMAQILKAIYYPQEDFLKATLG

Query:  SRPSYVWRGII
         +PSY WR I+
Subjt:  SRPSYVWRGII

PNX98065.1 ribonuclease H [Trifolium pratense]1.4e-5750.47Show/hide
Query:  MQRILKVYEVATGQVFNFDKSEIAFGTGVTNEVKDFLANILKVKIVQDHGKYLGCSSSLSRNKKASLNYITSKVQKVLQGWKAKLFSTTGKEVLIKVVAQ
        +Q I+++Y+ A+GQ+ NF KSE+ F  GV+N+++  ++NIL +KI+    KYLG   +L R+KK   N+I  K+ K L+GWK K  S  G+  LIK VAQ
Subjt:  MQRILKVYEVATGQVFNFDKSEIAFGTGVTNEVKDFLANILKVKIVQDHGKYLGCSSSLSRNKKASLNYITSKVQKVLQGWKAKLFSTTGKEVLIKVVAQ

Query:  AIPTYTLSCFKLPQGCCHDLNRLMANFWWGSSEQGRKIHWLKWETMTKLKDRGGMSFRDISLFNQALLAKHTWRLLHRPQSLMAQILKAIYYPQEDFLKA
        AIPTY +S F LP+G C  L +++ NFWWGSS   RKIHW+KW T+ K K  GG+ FRD+  FN+ALLAK  WRL+ +P SL+A+ILKA YYP+ +FLKA
Subjt:  AIPTYTLSCFKLPQGCCHDLNRLMANFWWGSSEQGRKIHWLKWETMTKLKDRGGMSFRDISLFNQALLAKHTWRLLHRPQSLMAQILKAIYYPQEDFLKA

Query:  TLGSRPSYVWRGII
        +   + SY W+ I+
Subjt:  TLGSRPSYVWRGII

PNY02482.1 ribonuclease H, partial [Trifolium pratense]1.4e-5750.47Show/hide
Query:  MQRILKVYEVATGQVFNFDKSEIAFGTGVTNEVKDFLANILKVKIVQDHGKYLGCSSSLSRNKKASLNYITSKVQKVLQGWKAKLFSTTGKEVLIKVVAQ
        +Q I+++Y+ A+GQ+ NF KSE+ F  GV+N+++  ++NIL +KI+    KYLG   +L R+KK   N+I  K+ K L+GWK K  S  G+  LIK VAQ
Subjt:  MQRILKVYEVATGQVFNFDKSEIAFGTGVTNEVKDFLANILKVKIVQDHGKYLGCSSSLSRNKKASLNYITSKVQKVLQGWKAKLFSTTGKEVLIKVVAQ

Query:  AIPTYTLSCFKLPQGCCHDLNRLMANFWWGSSEQGRKIHWLKWETMTKLKDRGGMSFRDISLFNQALLAKHTWRLLHRPQSLMAQILKAIYYPQEDFLKA
        AIPTY +S F LP+G C  L +++ NFWWGSS   RKIHW+KW T+ K K  GG+ FRD+  FN+ALLAK  WRL+ +P SL+A+ILKA YYP+ +FLKA
Subjt:  AIPTYTLSCFKLPQGCCHDLNRLMANFWWGSSEQGRKIHWLKWETMTKLKDRGGMSFRDISLFNQALLAKHTWRLLHRPQSLMAQILKAIYYPQEDFLKA

Query:  TLGSRPSYVWRGII
        +   + SY W+ I+
Subjt:  TLGSRPSYVWRGII

PNY02790.1 ribonuclease H, partial [Trifolium pratense]1.4e-5750.47Show/hide
Query:  MQRILKVYEVATGQVFNFDKSEIAFGTGVTNEVKDFLANILKVKIVQDHGKYLGCSSSLSRNKKASLNYITSKVQKVLQGWKAKLFSTTGKEVLIKVVAQ
        +Q I+++Y+ A+GQ+ NF KSE+ F  GV+N+++  ++NIL +KI+    KYLG   +L R+KK   N+I  K+ K L+GWK K  S  G+  LIK VAQ
Subjt:  MQRILKVYEVATGQVFNFDKSEIAFGTGVTNEVKDFLANILKVKIVQDHGKYLGCSSSLSRNKKASLNYITSKVQKVLQGWKAKLFSTTGKEVLIKVVAQ

Query:  AIPTYTLSCFKLPQGCCHDLNRLMANFWWGSSEQGRKIHWLKWETMTKLKDRGGMSFRDISLFNQALLAKHTWRLLHRPQSLMAQILKAIYYPQEDFLKA
        AIPTY +S F LP+G C  L +++ NFWWGSS   RKIHW+KW T+ K K  GG+ FRD+  FN+ALLAK  WRL+ +P SL+A+ILKA YYP+ +FLKA
Subjt:  AIPTYTLSCFKLPQGCCHDLNRLMANFWWGSSEQGRKIHWLKWETMTKLKDRGGMSFRDISLFNQALLAKHTWRLLHRPQSLMAQILKAIYYPQEDFLKA

Query:  TLGSRPSYVWRGII
        +   + SY W+ I+
Subjt:  TLGSRPSYVWRGII

VVA38592.1 PREDICTED: reverse mRNAase, partial [Prunus dulcis]2.4e-5750.23Show/hide
Query:  MQRILKVYEVATGQVFNFDKSEIAFGTGVTNEVKDFLANILKVKIVQDHGKYLGCSSSLSRNKKASLNYITSKVQKVLQGWKAKLFSTTGKEVLIKVVAQ
        ++ I +VYE A+GQ  N  KS +AF T +  + +  LA++L V  V  H  YLG    L RNK     Y+  +V K LQGW+ +  S  GKEVL+KVVAQ
Subjt:  MQRILKVYEVATGQVFNFDKSEIAFGTGVTNEVKDFLANILKVKIVQDHGKYLGCSSSLSRNKKASLNYITSKVQKVLQGWKAKLFSTTGKEVLIKVVAQ

Query:  AIPTYTLSCFKLPQGCCHDLNRLMANFWWGSSEQGRKIHWLKWETMTKLKDRGGMSFRDISLFNQALLAKHTWRLLHRPQSLMAQILKAIYYPQEDFLKA
        +IP Y +SCF LPQG CH++ ++MA FWWG   + RKIHW++WE + K K  GGM FR +  FN A+LAK  WRL+H P SL +++LKA Y+PQ +F +A
Subjt:  AIPTYTLSCFKLPQGCCHDLNRLMANFWWGSSEQGRKIHWLKWETMTKLKDRGGMSFRDISLFNQALLAKHTWRLLHRPQSLMAQILKAIYYPQEDFLKA

Query:  TLGSRPSYVWRGI
        TLGSRPS VW+ I
Subjt:  TLGSRPSYVWRGI

TrEMBL top hitse value%identityAlignment
A0A2K3NHG3 Ribonuclease H (Fragment)6.8e-5850.47Show/hide
Query:  MQRILKVYEVATGQVFNFDKSEIAFGTGVTNEVKDFLANILKVKIVQDHGKYLGCSSSLSRNKKASLNYITSKVQKVLQGWKAKLFSTTGKEVLIKVVAQ
        +Q I+++Y+ A+GQ+ NF KSE+ F  GV+N+++  ++NIL +KI+    KYLG   +L R+KK   N+I  K+ K L+GWK K  S  G+  LIK VAQ
Subjt:  MQRILKVYEVATGQVFNFDKSEIAFGTGVTNEVKDFLANILKVKIVQDHGKYLGCSSSLSRNKKASLNYITSKVQKVLQGWKAKLFSTTGKEVLIKVVAQ

Query:  AIPTYTLSCFKLPQGCCHDLNRLMANFWWGSSEQGRKIHWLKWETMTKLKDRGGMSFRDISLFNQALLAKHTWRLLHRPQSLMAQILKAIYYPQEDFLKA
        AIPTY +S F LP+G C  L +++ NFWWGSS   RKIHW+KW T+ K K  GG+ FRD+  FN+ALLAK  WRL+ +P SL+A+ILKA YYP+ +FLKA
Subjt:  AIPTYTLSCFKLPQGCCHDLNRLMANFWWGSSEQGRKIHWLKWETMTKLKDRGGMSFRDISLFNQALLAKHTWRLLHRPQSLMAQILKAIYYPQEDFLKA

Query:  TLGSRPSYVWRGII
        +   + SY W+ I+
Subjt:  TLGSRPSYVWRGII

A0A803PM68 Uncharacterized protein9.4e-6049.77Show/hide
Query:  QRILKVYEVATGQVFNFDKSEIAFGTGVTNEVKDFLANILKVKIVQDHGKYLGCSSSLSRNKKASLNYITSKVQKVLQGWKAKLFSTTGKEVLIKVVAQA
        Q +L+ Y +A+GQV NF KSE+ FG  V++ +K  LA ++ VK+V ++GKYLG  S + R KK    +I +KV   L+GWK   FS  GKE+LIK + QA
Subjt:  QRILKVYEVATGQVFNFDKSEIAFGTGVTNEVKDFLANILKVKIVQDHGKYLGCSSSLSRNKKASLNYITSKVQKVLQGWKAKLFSTTGKEVLIKVVAQA

Query:  IPTYTLSCFKLPQGCCHDLNRLMANFWWGSSEQGRKIHWLKWETMTKLKDRGGMSFRDISLFNQALLAKHTWRLLHRPQSLMAQILKAIYYPQEDFLKAT
        IPTYT+SCF+LP+   + ++ + A FWWGSSE+  KIHW KW T+ K K++GG+ FRD+ LFNQALLAK  WR +  P SL +++LKA Y+P    L+A 
Subjt:  IPTYTLSCFKLPQGCCHDLNRLMANFWWGSSEQGRKIHWLKWETMTKLKDRGGMSFRDISLFNQALLAKHTWRLLHRPQSLMAQILKAIYYPQEDFLKAT

Query:  LGSRPSYVWRGIIWG
         G+  S+VWR ++WG
Subjt:  LGSRPSYVWRGIIWG

A0A803PWX1 Uncharacterized protein1.2e-5950.7Show/hide
Query:  QRILKVYEVATGQVFNFDKSEIAFGTGVTNEVKDFLANILKVKIVQDHGKYLGCSSSLSRNKKASLNYITSKVQKVLQGWKAKLFSTTGKEVLIKVVAQA
        + +L+ Y  A+GQ+ NF KSE+ FG  VT  V+  LANI+ VK+V ++GKYLG  S + R KK    +I +KV   L+GWK   FS  GKEVLIK V QA
Subjt:  QRILKVYEVATGQVFNFDKSEIAFGTGVTNEVKDFLANILKVKIVQDHGKYLGCSSSLSRNKKASLNYITSKVQKVLQGWKAKLFSTTGKEVLIKVVAQA

Query:  IPTYTLSCFKLPQGCCHDLNRLMANFWWGSSEQGRKIHWLKWETMTKLKDRGGMSFRDISLFNQALLAKHTWRLLHRPQSLMAQILKAIYYPQEDFLKAT
        IPTYT+SCF+LP+   + ++ + A FWWGSSE+  KIHW KW+ + K K++GG+ FRD+ LFNQALLAK  WR +  P SL +++LKA YYP    ++A 
Subjt:  IPTYTLSCFKLPQGCCHDLNRLMANFWWGSSEQGRKIHWLKWETMTKLKDRGGMSFRDISLFNQALLAKHTWRLLHRPQSLMAQILKAIYYPQEDFLKAT

Query:  LGSRPSYVWRGIIWG
         G+  S+VWR ++WG
Subjt:  LGSRPSYVWRGIIWG

A0A803Q1K6 Uncharacterized protein1.6e-5950.7Show/hide
Query:  QRILKVYEVATGQVFNFDKSEIAFGTGVTNEVKDFLANILKVKIVQDHGKYLGCSSSLSRNKKASLNYITSKVQKVLQGWKAKLFSTTGKEVLIKVVAQA
        Q++L  Y  A+GQ+ N+ KSE  FG  VT EV+  LA IL V+ V++HGKYLG  S + RNK+  L+ I +KV   ++GWK  +FS  GKEVLIK + QA
Subjt:  QRILKVYEVATGQVFNFDKSEIAFGTGVTNEVKDFLANILKVKIVQDHGKYLGCSSSLSRNKKASLNYITSKVQKVLQGWKAKLFSTTGKEVLIKVVAQA

Query:  IPTYTLSCFKLPQGCCHDLNRLMANFWWGSSEQGRKIHWLKWETMTKLKDRGGMSFRDISLFNQALLAKHTWRLLHRPQSLMAQILKAIYYPQEDFLKAT
        IPTYT+SCFKLP+     L+R+ + FWWGSS++ +KIHW KW  + + KD+GG+ FRD+ +FNQALLAK  WR L  PQ L +++LKA Y+P++  L+A 
Subjt:  IPTYTLSCFKLPQGCCHDLNRLMANFWWGSSEQGRKIHWLKWETMTKLKDRGGMSFRDISLFNQALLAKHTWRLLHRPQSLMAQILKAIYYPQEDFLKAT

Query:  LGSRPSYVWRGIIWG
         G+  S+V R ++WG
Subjt:  LGSRPSYVWRGIIWG

A0A803QQT2 Uncharacterized protein1.1e-6051.63Show/hide
Query:  QRILKVYEVATGQVFNFDKSEIAFGTGVTNEVKDFLANILKVKIVQDHGKYLGCSSSLSRNKKASLNYITSKVQKVLQGWKAKLFSTTGKEVLIKVVAQA
        Q++L  Y  A+GQ+ N+ KSE  FG  VT EV+  LA IL V+ V++HGKYLG  S + RNKK  L+ I +KV   ++GWK  +FS  GKEVLIKV+ QA
Subjt:  QRILKVYEVATGQVFNFDKSEIAFGTGVTNEVKDFLANILKVKIVQDHGKYLGCSSSLSRNKKASLNYITSKVQKVLQGWKAKLFSTTGKEVLIKVVAQA

Query:  IPTYTLSCFKLPQGCCHDLNRLMANFWWGSSEQGRKIHWLKWETMTKLKDRGGMSFRDISLFNQALLAKHTWRLLHRPQSLMAQILKAIYYPQEDFLKAT
        IPTYT+SCFKLP+     L+R+ + FWWGS ++ +KIHW KW  + + KD+GG+ FRD+ +FNQALLAK  WR L  PQ L +++LKA Y+P++  L+A 
Subjt:  IPTYTLSCFKLPQGCCHDLNRLMANFWWGSSEQGRKIHWLKWETMTKLKDRGGMSFRDISLFNQALLAKHTWRLLHRPQSLMAQILKAIYYPQEDFLKAT

Query:  LGSRPSYVWRGIIWG
         G+  S+VWR ++WG
Subjt:  LGSRPSYVWRGIIWG

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657502.1e-1631.65Show/hide
Query:  RNKKASLNYITSKVQKVLQGWKAKLFSTTGKEVLIKVVAQAIPTYTLSCFKLPQGCCHDLNRLMANFWWGSSEQGRKIHWLKWETMTKLKDRGGMSFRDI
        R  K +   I  +V   + GW+ K  S  G+  L K V  ++P +++S   LPQ   + L++L   F WGS+ + +K H +KW  +   K  GG+  R  
Subjt:  RNKKASLNYITSKVQKVLQGWKAKLFSTTGKEVLIKVVAQAIPTYTLSCFKLPQGCCHDLNRLMANFWWGSSEQGRKIHWLKWETMTKLKDRGGMSFRDI

Query:  SLFNQALLAKHTWRLLHRPQSLMAQILKAIYYPQEDFLKATLGSRPSY--VWRGIIWG
           N+AL++K  WRLL    SL   +L+  Y+  E      L  + S+   WR I  G
Subjt:  SLFNQALLAKHTWRLLHRPQSLMAQILKAIYYPQEDFLKATLGSRPSY--VWRGIIWG

P93295 Uncharacterized mitochondrial protein AtMg003106.3e-2945.3Show/hide
Query:  AIPTYTLSCFKLPQGCCHDLNRLMANFWWGSSEQGRKIHWLKWETMTKLK-DRGGMSFRDISLFNQALLAKHTWRLLHRPQSLMAQILKAIYYPQEDFLK
        A+P Y +SCF+L +  C  L   M  FWW S E  RKI W+ W+ + K K D GG+ FRD+  FNQALLAK ++R++H+P +L++++L++ Y+P    ++
Subjt:  AIPTYTLSCFKLPQGCCHDLNRLMANFWWGSSEQGRKIHWLKWETMTKLK-DRGGMSFRDISLFNQALLAKHTWRLLHRPQSLMAQILKAIYYPQEDFLK

Query:  ATLGSRPSYVWRGIIWG
         ++G+RPSY WR II G
Subjt:  ATLGSRPSYVWRGIIWG

Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein4.5e-3046.02Show/hide
Query:  AIPTYTLSCFKLPQGCCHDLNRLMANFWWGSSEQGRKIHWLKWETMTKLKDRGGMSFRDISLFNQALLAKHTWRLLHRPQSLMAQILKAIYYPQEDFLKA
        A+PTYT++CF LP+  C  +  ++A+FWW + ++ + +HW  W+ ++  K  GG+ F+DI  FN ALL K  WR+L RP+SLMA++ K+ Y+ + D L A
Subjt:  AIPTYTLSCFKLPQGCCHDLNRLMANFWWGSSEQGRKIHWLKWETMTKLKDRGGMSFRDISLFNQALLAKHTWRLLHRPQSLMAQILKAIYYPQEDFLKA

Query:  TLGSRPSYVWRGI
         LGSRPS+VW+ I
Subjt:  TLGSRPSYVWRGI

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein4.5e-3045.3Show/hide
Query:  AIPTYTLSCFKLPQGCCHDLNRLMANFWWGSSEQGRKIHWLKWETMTKLK-DRGGMSFRDISLFNQALLAKHTWRLLHRPQSLMAQILKAIYYPQEDFLK
        A+P Y +SCF+L +  C  L   M  FWW S E  RKI W+ W+ + K K D GG+ FRD+  FNQALLAK ++R++H+P +L++++L++ Y+P    ++
Subjt:  AIPTYTLSCFKLPQGCCHDLNRLMANFWWGSSEQGRKIHWLKWETMTKLK-DRGGMSFRDISLFNQALLAKHTWRLLHRPQSLMAQILKAIYYPQEDFLK

Query:  ATLGSRPSYVWRGIIWG
         ++G+RPSY WR II G
Subjt:  ATLGSRPSYVWRGIIWG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAACGAATCCTGAAAGTATATGAAGTAGCCACTGGGCAAGTCTTTAATTTTGATAAATCGGAGATAGCTTTTGGGACAGGAGTGACAAATGAAGTAAAAGACTTTTT
AGCCAACATTTTAAAAGTCAAGATAGTCCAAGACCATGGAAAGTATCTTGGATGTTCGTCTTCCCTATCTAGAAACAAGAAAGCTTCTTTGAATTACATAACATCTAAAG
TTCAGAAGGTGCTGCAGGGTTGGAAAGCAAAATTATTTTCAACGACTGGAAAGGAAGTGTTGATAAAGGTTGTAGCTCAGGCAATCCCCACTTATACTCTCTCATGTTTC
AAACTTCCTCAGGGGTGCTGCCATGACCTGAACAGGCTGATGGCTAATTTTTGGTGGGGTAGTTCTGAACAGGGGAGGAAAATTCATTGGCTGAAATGGGAAACAATGAC
AAAACTAAAGGATAGAGGAGGGATGAGTTTTAGAGATATTAGTCTGTTCAACCAGGCCTTGTTGGCCAAACATACCTGGAGACTATTACATAGACCACAATCTCTAATGG
CCCAAATCCTGAAAGCCATATATTATCCTCAGGAAGATTTCCTAAAAGCAACTTTGGGAAGCAGACCATCTTATGTTTGGAGGGGGATCATTTGGGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCAACGAATCCTGAAAGTATATGAAGTAGCCACTGGGCAAGTCTTTAATTTTGATAAATCGGAGATAGCTTTTGGGACAGGAGTGACAAATGAAGTAAAAGACTTTTT
AGCCAACATTTTAAAAGTCAAGATAGTCCAAGACCATGGAAAGTATCTTGGATGTTCGTCTTCCCTATCTAGAAACAAGAAAGCTTCTTTGAATTACATAACATCTAAAG
TTCAGAAGGTGCTGCAGGGTTGGAAAGCAAAATTATTTTCAACGACTGGAAAGGAAGTGTTGATAAAGGTTGTAGCTCAGGCAATCCCCACTTATACTCTCTCATGTTTC
AAACTTCCTCAGGGGTGCTGCCATGACCTGAACAGGCTGATGGCTAATTTTTGGTGGGGTAGTTCTGAACAGGGGAGGAAAATTCATTGGCTGAAATGGGAAACAATGAC
AAAACTAAAGGATAGAGGAGGGATGAGTTTTAGAGATATTAGTCTGTTCAACCAGGCCTTGTTGGCCAAACATACCTGGAGACTATTACATAGACCACAATCTCTAATGG
CCCAAATCCTGAAAGCCATATATTATCCTCAGGAAGATTTCCTAAAAGCAACTTTGGGAAGCAGACCATCTTATGTTTGGAGGGGGATCATTTGGGGATGA
Protein sequenceShow/hide protein sequence
MQRILKVYEVATGQVFNFDKSEIAFGTGVTNEVKDFLANILKVKIVQDHGKYLGCSSSLSRNKKASLNYITSKVQKVLQGWKAKLFSTTGKEVLIKVVAQAIPTYTLSCF
KLPQGCCHDLNRLMANFWWGSSEQGRKIHWLKWETMTKLKDRGGMSFRDISLFNQALLAKHTWRLLHRPQSLMAQILKAIYYPQEDFLKATLGSRPSYVWRGIIWG