| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa] | 1.9e-31 | 92 | Show/hide |
Query: SYRQAMNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQRE
SY+QAMNDVDKD+W KAMDLEMESMYFN VWELVDL EGVKPIGCKWIYKRKRD+AGKVQTFKARLVAKGYTQRE
Subjt: SYRQAMNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQRE
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| KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa] | 1.8e-16 | 39.1 | Show/hide |
Query: MSSSIISLLKNEQFTGEIFPQWKSNLNTILVVEDLRFVLTEECPPVPPRTAAQAVKDAYERWTKANEKEMFGLSSYQLHHDALKNVLNAKMLEGQSYRQA
MSSSII+LLK +Q TGE + WKS LN ILV+ DL FVL EECPP P + A+Q+V+DAY+RWTKAN+K + + ++ ++L+ K + RQ
Subjt: MSSSIISLLKNEQFTGEIFPQWKSNLNTILVVEDLRFVLTEECPPVPPRTAAQAVKDAYERWTKANEKEMFGLSSYQLHHDALKNVLNAKMLEGQSYRQA
Query: MNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAAGKVQT
M+ + + ++ ++ E+ + V P G + I KRK + GK T
Subjt: MNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAAGKVQT
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| KAA0026242.1 gag/pol protein [Cucumis melo var. makuwa] | 7.8e-33 | 29.12 | Show/hide |
Query: MSSSIISLLKNEQFTGEIFPQWKSNLNTILVVEDLRFVLTEECPPVPPRTAAQAVKDAYERWTKANEK------------------------EMFGLSSY
MSSSII+LLK +Q TGE + WKS LN ILV+ DLRFVL EECPP + A+Q+V+DAY+RWTKAN+K EMFG S
Subjt: MSSSIISLLKNEQFTGEIFPQWKSNLNTILVVEDLRFVLTEECPPVPPRTAAQAVKDAYERWTKANEK------------------------EMFGLSSY
Query: QLHHDALKNVLNAKMLEGQ---------------------------------------------------------------------------------
Q+ +A+K V NA+M EG
Subjt: QLHHDALKNVLNAKMLEGQ---------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: --------------------------------------------SYRQAMNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAA
SY+Q MND+DKD+W KAMDLEMESMYFN VW+LVDL EGVKPI CKWIYKRKRD+A
Subjt: --------------------------------------------SYRQAMNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAA
Query: GKVQTFKARLVAKGYTQRE
KVQTFKARLVAKGYT+RE
Subjt: GKVQTFKARLVAKGYTQRE
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| KAA0054278.1 gag/pol protein [Cucumis melo var. makuwa] | 1.3e-43 | 40.33 | Show/hide |
Query: MSSSIISLLKNEQFTGEIFPQWKSNLNTILVVEDLRFVLTEECPPVPPRTAAQAVKDAYERWTKANEK-------------------------------E
MSSSII+LLK +Q T E + WKS LN ILV+ DLRFVL EECPP P + A Q+V+DAY+RWTKAN+K E
Subjt: MSSSIISLLKNEQFTGEIFPQWKSNLNTILVVEDLRFVLTEECPPVPPRTAAQAVKDAYERWTKANEK-------------------------------E
Query: MFGLSSYQLHHDALKNVLNAK-------------------------MLEGQ-------------------------------------------------
MFG S Q+ +A NV +++ +EG+
Subjt: MFGLSSYQLHHDALKNVLNAK-------------------------MLEGQ-------------------------------------------------
Query: -------------------------SYRQAMNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQRE
SY+QA+NDVDKD+W KAM+LEMESMYFN VWELVDL +GVKPIGCKWIYKRKRD+AGKVQTFKARLVAKGYTQR+
Subjt: -------------------------SYRQAMNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQRE
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| KAA0058278.1 gag/pol protein [Cucumis melo var. makuwa] | 3.0e-32 | 93.33 | Show/hide |
Query: SYRQAMNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQRE
SY+QAMNDVDKD+W KAMDLEMESMYFN VWELVDLLEGVKPIGCKWIYKRKRD+AGKVQTFKARLVAKGYTQRE
Subjt: SYRQAMNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQRE
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| KAA0058278.1 gag/pol protein [Cucumis melo var. makuwa] | 1.5e-15 | 64.71 | Show/hide |
Query: MSSSIISLLKNEQFTGEIFPQWKSNLNTILVVEDLRFVLTEECPPVPPRTAAQAVKDAYERWTKANEK
M SSII+LLK +Q TGE + WKS LN ILV+ DL FVL EECPP P + A+Q+V+DAY+RWTKAN+K
Subjt: MSSSIISLLKNEQFTGEIFPQWKSNLNTILVVEDLRFVLTEECPPVPPRTAAQAVKDAYERWTKANEK
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| KAA0058278.1 gag/pol protein [Cucumis melo var. makuwa] | 1.9e-31 | 92 | Show/hide |
Query: SYRQAMNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQRE
SY+QAMNDVDKD+W KAMDLEMESMYFN VWELVDL EGVKPIGCKWIYKRKRD+AGKVQTFKARLVAKGYTQRE
Subjt: SYRQAMNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQRE
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7SM77 Gag/pol protein | 3.8e-33 | 29.12 | Show/hide |
Query: MSSSIISLLKNEQFTGEIFPQWKSNLNTILVVEDLRFVLTEECPPVPPRTAAQAVKDAYERWTKANEK------------------------EMFGLSSY
MSSSII+LLK +Q TGE + WKS LN ILV+ DLRFVL EECPP + A+Q+V+DAY+RWTKAN+K EMFG S
Subjt: MSSSIISLLKNEQFTGEIFPQWKSNLNTILVVEDLRFVLTEECPPVPPRTAAQAVKDAYERWTKANEK------------------------EMFGLSSY
Query: QLHHDALKNVLNAKMLEGQ---------------------------------------------------------------------------------
Q+ +A+K V NA+M EG
Subjt: QLHHDALKNVLNAKMLEGQ---------------------------------------------------------------------------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: --------------------------------------------SYRQAMNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAA
SY+Q MND+DKD+W KAMDLEMESMYFN VW+LVDL EGVKPI CKWIYKRKRD+A
Subjt: --------------------------------------------SYRQAMNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAA
Query: GKVQTFKARLVAKGYTQRE
KVQTFKARLVAKGYT+RE
Subjt: GKVQTFKARLVAKGYTQRE
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| A0A5A7TZD0 Gag/pol protein | 8.5e-17 | 39.1 | Show/hide |
Query: MSSSIISLLKNEQFTGEIFPQWKSNLNTILVVEDLRFVLTEECPPVPPRTAAQAVKDAYERWTKANEKEMFGLSSYQLHHDALKNVLNAKMLEGQSYRQA
MSSSII+LLK +Q TGE + WKS LN ILV+ DL FVL EECPP P + A+Q+V+DAY+RWTKAN+K + + ++ ++L+ K + RQ
Subjt: MSSSIISLLKNEQFTGEIFPQWKSNLNTILVVEDLRFVLTEECPPVPPRTAAQAVKDAYERWTKANEKEMFGLSSYQLHHDALKNVLNAKMLEGQSYRQA
Query: MNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAAGKVQT
M+ + + ++ ++ E+ + V P G + I KRK + GK T
Subjt: MNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAAGKVQT
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| A0A5A7TZD0 Gag/pol protein | 9.3e-32 | 92 | Show/hide |
Query: SYRQAMNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQRE
SY+QAMNDVDKD+W KAMDLEMESMYFN VWELVDL EGVKPIGCKWIYKRKRD+AGKVQTFKARLVAKGYTQRE
Subjt: SYRQAMNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQRE
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| A0A5A7UH21 Gag/pol protein | 6.2e-44 | 40.33 | Show/hide |
Query: MSSSIISLLKNEQFTGEIFPQWKSNLNTILVVEDLRFVLTEECPPVPPRTAAQAVKDAYERWTKANEK-------------------------------E
MSSSII+LLK +Q T E + WKS LN ILV+ DLRFVL EECPP P + A Q+V+DAY+RWTKAN+K E
Subjt: MSSSIISLLKNEQFTGEIFPQWKSNLNTILVVEDLRFVLTEECPPVPPRTAAQAVKDAYERWTKANEK-------------------------------E
Query: MFGLSSYQLHHDALKNVLNAK-------------------------MLEGQ-------------------------------------------------
MFG S Q+ +A NV +++ +EG+
Subjt: MFGLSSYQLHHDALKNVLNAK-------------------------MLEGQ-------------------------------------------------
Query: -------------------------SYRQAMNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQRE
SY+QA+NDVDKD+W KAM+LEMESMYFN VWELVDL +GVKPIGCKWIYKRKRD+AGKVQTFKARLVAKGYTQR+
Subjt: -------------------------SYRQAMNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQRE
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| A0A5A7USZ2 Gag/pol protein | 1.4e-32 | 93.33 | Show/hide |
Query: SYRQAMNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQRE
SY+QAMNDVDKD+W KAMDLEMESMYFN VWELVDLLEGVKPIGCKWIYKRKRD+AGKVQTFKARLVAKGYTQRE
Subjt: SYRQAMNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQRE
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| A0A5A7USZ2 Gag/pol protein | 7.2e-16 | 64.71 | Show/hide |
Query: MSSSIISLLKNEQFTGEIFPQWKSNLNTILVVEDLRFVLTEECPPVPPRTAAQAVKDAYERWTKANEK
M SSII+LLK +Q TGE + WKS LN ILV+ DL FVL EECPP P + A+Q+V+DAY+RWTKAN+K
Subjt: MSSSIISLLKNEQFTGEIFPQWKSNLNTILVVEDLRFVLTEECPPVPPRTAAQAVKDAYERWTKANEK
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| A0A5A7USZ2 Gag/pol protein | 9.3e-32 | 92 | Show/hide |
Query: SYRQAMNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQRE
SY+QAMNDVDKD+W KAMDLEMESMYFN VWELVDL EGVKPIGCKWIYKRKRD+AGKVQTFKARLVAKGYTQRE
Subjt: SYRQAMNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQRE
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| A0A5D3BUN8 Gag/pol protein | 8.5e-17 | 39.1 | Show/hide |
Query: MSSSIISLLKNEQFTGEIFPQWKSNLNTILVVEDLRFVLTEECPPVPPRTAAQAVKDAYERWTKANEKEMFGLSSYQLHHDALKNVLNAKMLEGQSYRQA
MSSSII+LLK +Q TGE + WKS LN ILV+ DL FVL EECPP P + A+Q+V+DAY+RWTKAN+K + + ++ ++L+ K + RQ
Subjt: MSSSIISLLKNEQFTGEIFPQWKSNLNTILVVEDLRFVLTEECPPVPPRTAAQAVKDAYERWTKANEKEMFGLSSYQLHHDALKNVLNAKMLEGQSYRQA
Query: MNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAAGKVQT
M+ + + ++ ++ E+ + V P G + I KRK + GK T
Subjt: MNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAAGKVQT
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 1.6e-04 | 29.29 | Show/hide |
Query: SYQLHHDAL-KNVLNAKMLEG---QSYRQAMNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQR
SY ++L K VLNA + S+ + DK W +A++ E+ + N W + E + +W++ K + G +KARLVA+G+TQ+
Subjt: SYQLHHDAL-KNVLNAKMLEG---QSYRQAMNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQR
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.1e-10 | 39.74 | Show/hide |
Query: EGQSYRQAMNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQRE
E +S ++ ++ +K++ KAM EMES+ N ++LV+L +G +P+ CKW++K K+D K+ +KARLV KG+ Q++
Subjt: EGQSYRQAMNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQRE
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| P92520 Uncharacterized mitochondrial protein AtMg00820 | 2.9e-06 | 40.32 | Show/hide |
Query: WAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQRE
W +AM E++++ N+ W LV +GCKW++K K + G + KARLVAKG+ Q E
Subjt: WAKAMDLEMESMYFNQVWELVDLLEGVKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQRE
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 4.5e-07 | 38.36 | Show/hide |
Query: RQAMNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEG-VKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQR
R A+ + + W AM E+ + N W+LV V +GC+WI+ +K ++ G + +KARLVAKGY QR
Subjt: RQAMNDVDKDEWAKAMDLEMESMYFNQVWELVDLLEG-VKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQR
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 1.2e-07 | 31.85 | Show/hide |
Query: PPVPP--------RTAAQAVKDAYERWTKANEKEMFGLSSYQLHHDALKNVLNAKMLEGQSYRQAMNDVDKDEWAKAMDLEMESMYFNQVWELV-DLLEG
PP+PP + AQA + + T+A + G+ + ++ A E ++ QAM D D W +AM E+ + N W+LV
Subjt: PPVPP--------RTAAQAVKDAYERWTKANEKEMFGLSSYQLHHDALKNVLNAKMLEGQSYRQAMNDVDKDEWAKAMDLEMESMYFNQVWELV-DLLEG
Query: VKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQR
V +GC+WI+ +K ++ G + +KARLVAKGY QR
Subjt: VKPIGCKWIYKRKRDAAGKVQTFKARLVAKGYTQR
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