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Lag0005647 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005647
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionProtein FAR1-RELATED SEQUENCE 4
Genome locationchr6:24944729..24947318
RNA-Seq ExpressionLag0005647
SyntenyLag0005647
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0032196 - transposition (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038035.1 uncharacterized protein E6C27_scaffold36G002340 [Cucumis melo var. makuwa]3.5e-2127.34Show/hide
Query:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVAD-
        + L  V  +F GRW E++RY  +    V VP   + QEF  CI+ ++FP+ E  ++RLT+Y    N +N+I+I +D+D +W+M  I     +D+ +V D 
Subjt:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVAD-

Query:  --------------------------------HFMTRYGG------------------------GGNLHFTAIR----------------------GSPE
                                         F + + G                          +     +R                      G+PE
Subjt:  --------------------------------HFMTRYGG------------------------GGNLHFTAIR----------------------GSPE

Query:  ASYALILVFSVALIEKNPGAYTAFDVDNEGKFRYFFMCVSASIHAWKYCFPVMSVE
          YA++  FS ALI  NPG YTA + D+EG+F+++FM ++ASI AW YC P++ V+
Subjt:  ASYALILVFSVALIEKNPGAYTAFDVDNEGKFRYFFMCVSASIHAWKYCFPVMSVE

KAA0042312.1 protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa]4.3e-1929.15Show/hide
Query:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVAD-
        + L  V  +  GRW E+ RY  +    V V    + QEF  CI+ ++FP+ +  ++RLT+Y  G N   +I+I DD+DV+W+M  +     +D+ +V D 
Subjt:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVAD-

Query:  -----------------------------------HFMTRYGG----------GGNLHFTAIRGSPEASYALILVFSVALIEKNPGAYTAFDVDNEGKFR
                                           ++M  + G          G      +IR + E SYA++  FS ALI  N       + D++G+F+
Subjt:  -----------------------------------HFMTRYGG----------GGNLHFTAIRGSPEASYALILVFSVALIEKNPGAYTAFDVDNEGKFR

Query:  YFFMCVSASIHAWKYCFPVMSVE
        ++FM ++ASI AW YC PV+SV+
Subjt:  YFFMCVSASIHAWKYCFPVMSVE

KAA0066503.1 uncharacterized protein E6C27_scaffold25G00500 [Cucumis melo var. makuwa]1.7e-2838.98Show/hide
Query:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVADH
        + L  V  +F GRW E+ RY  ++   V VP   + QEF  CI  ++FP+ E  ++RLT+Y    N   +IRI DD+DV+W+M  I     +D+ +V D 
Subjt:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVADH

Query:  FMTRYGGGGNLHFTAIRGSPEASYALILVFSVALIEKNPGAYTAFDVDNEGKFRYFFMCVSASIHAWKYCFPVMSVE
              G          G+ E SYA++  F  ALI  NPG YTA + ++EG+F+++ M ++ASI AW YC PV+SV+
Subjt:  FMTRYGGGGNLHFTAIRGSPEASYALILVFSVALIEKNPGAYTAFDVDNEGKFRYFFMCVSASIHAWKYCFPVMSVE

TYK21259.1 protein FAR1-RELATED SEQUENCE 4 [Cucumis melo var. makuwa]1.6e-1826.56Show/hide
Query:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVAD-
        + L  V  +F GRW E+ RY  ++                  I+ ++FP+ E  ++RLT+Y    N +  IRI DD++V+W+M  +     +D+ +V D 
Subjt:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVAD-

Query:  ----------------------------------------------------------------------HFMTRYGG---------GGNLHFTAIRGSP
                                                                              +    +GG         G  +   +IRG+P
Subjt:  ----------------------------------------------------------------------HFMTRYGG---------GGNLHFTAIRGSP

Query:  EASYALILVFSVALIEKNPGAYTAFDVDNEGKFRYFFMCVSASIHAWKYCFPVMSV
        E SYA++  FS ALI  NPG YTA + D+EG+F+++FM ++ASI AW YC PV+SV
Subjt:  EASYALILVFSVALIEKNPGAYTAFDVDNEGKFRYFFMCVSASIHAWKYCFPVMSV

XP_038887125.1 uncharacterized protein LOC120077310 [Benincasa hispida]2.4e-2225.91Show/hide
Query:  LLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVADHFM
        L  V +LF+GRWDEN++Y+ F+     +P   + Q+F E I+ K+FPS E  I+RL MY  G + +N+I I +D+ + W+M  + D    D+CVV DH  
Subjt:  LLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVADHFM

Query:  T----------------------RYGGGGN--------------------------------LHFTAI--------------------------------
        +                      ++  G N                                ++F A+                                
Subjt:  T----------------------RYGGGGN--------------------------------LHFTAI--------------------------------

Query:  ----------------------------------------RGSPEASYALILVFSVALIEKNPGAYTAFDVDNEGKFRYFFMCVSASIHAWKYCFPVMSV
                                                +G+ E+SY  +  FS ALIE NPG YT  + D+EG+F+Y+F+ ++ASI AWK+CFP+MSV
Subjt:  ----------------------------------------RGSPEASYALILVFSVALIEKNPGAYTAFDVDNEGKFRYFFMCVSASIHAWKYCFPVMSV

Query:  E
        +
Subjt:  E

TrEMBL top hitse value%identityAlignment
A0A5A7TFW2 Protein FAR-RED ELONGATED HYPOCOTYL 3-like2.1e-1929.15Show/hide
Query:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVAD-
        + L  V  +  GRW E+ RY  +    V V    + QEF  CI+ ++FP+ +  ++RLT+Y  G N   +I+I DD+DV+W+M  +     +D+ +V D 
Subjt:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVAD-

Query:  -----------------------------------HFMTRYGG----------GGNLHFTAIRGSPEASYALILVFSVALIEKNPGAYTAFDVDNEGKFR
                                           ++M  + G          G      +IR + E SYA++  FS ALI  N       + D++G+F+
Subjt:  -----------------------------------HFMTRYGG----------GGNLHFTAIRGSPEASYALILVFSVALIEKNPGAYTAFDVDNEGKFR

Query:  YFFMCVSASIHAWKYCFPVMSVE
        ++FM ++ASI AW YC PV+SV+
Subjt:  YFFMCVSASIHAWKYCFPVMSVE

A0A5A7VEN5 Uncharacterized protein8.4e-2938.98Show/hide
Query:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVADH
        + L  V  +F GRW E+ RY  ++   V VP   + QEF  CI  ++FP+ E  ++RLT+Y    N   +IRI DD+DV+W+M  I     +D+ +V D 
Subjt:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVADH

Query:  FMTRYGGGGNLHFTAIRGSPEASYALILVFSVALIEKNPGAYTAFDVDNEGKFRYFFMCVSASIHAWKYCFPVMSVE
              G          G+ E SYA++  F  ALI  NPG YTA + ++EG+F+++ M ++ASI AW YC PV+SV+
Subjt:  FMTRYGGGGNLHFTAIRGSPEASYALILVFSVALIEKNPGAYTAFDVDNEGKFRYFFMCVSASIHAWKYCFPVMSVE

A0A5D3DAG3 ZnF_PMZ domain-containing protein1.7e-2127.34Show/hide
Query:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVAD-
        + L  V  +F GRW E++RY  +    V VP   + QEF  CI+ ++FP+ E  ++RLT+Y    N +N+I+I +D+D +W+M  I     +D+ +V D 
Subjt:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVAD-

Query:  --------------------------------HFMTRYGG------------------------GGNLHFTAIR----------------------GSPE
                                         F + + G                          +     +R                      G+PE
Subjt:  --------------------------------HFMTRYGG------------------------GGNLHFTAIR----------------------GSPE

Query:  ASYALILVFSVALIEKNPGAYTAFDVDNEGKFRYFFMCVSASIHAWKYCFPVMSVE
          YA++  FS ALI  NPG YTA + D+EG+F+++FM ++ASI AW YC P++ V+
Subjt:  ASYALILVFSVALIEKNPGAYTAFDVDNEGKFRYFFMCVSASIHAWKYCFPVMSVE

A0A5D3DDB9 Protein FAR1-RELATED SEQUENCE 47.9e-1926.56Show/hide
Query:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVAD-
        + L  V  +F GRW E+ RY  ++                  I+ ++FP+ E  ++RLT+Y    N +  IRI DD++V+W+M  +     +D+ +V D 
Subjt:  VGLLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVAD-

Query:  ----------------------------------------------------------------------HFMTRYGG---------GGNLHFTAIRGSP
                                                                              +    +GG         G  +   +IRG+P
Subjt:  ----------------------------------------------------------------------HFMTRYGG---------GGNLHFTAIRGSP

Query:  EASYALILVFSVALIEKNPGAYTAFDVDNEGKFRYFFMCVSASIHAWKYCFPVMSV
        E SYA++  FS ALI  NPG YTA + D+EG+F+++FM ++ASI AW YC PV+SV
Subjt:  EASYALILVFSVALIEKNPGAYTAFDVDNEGKFRYFFMCVSASIHAWKYCFPVMSV

A0A5D3DDR3 MuDRA-like transposase5.1e-1825Show/hide
Query:  LLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDDRDVTWVM-------------------
        L  V  +  GRW E++RY  ++  +V VP   + Q+   CI+ ++FP+ E  ++ LT+Y NG N +N+IRI DD+ V+W+M                   
Subjt:  LLNVVVLFSGRWDENNRYNGFKSDSVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDDRDVTWVM-------------------

Query:  -SNIGDG--MASDICVVAD-----------------------------------------------------------------------------HFMT
         SNIG+   ++S++ +  D                                                                             ++M 
Subjt:  -SNIGDG--MASDICVVAD-----------------------------------------------------------------------------HFMT

Query:  RYGGGG----------NLHFTAIRGSPEASYALILVFSVALIEKNPGAYTAFDVDNEGKFRYFFMCVSASIHAWKYCFPVMSVE
         + G             +   +I G+PE SY ++  FS A I  NPG Y A   D+EG+F+++FM ++ASI AW YC PV+ V+
Subjt:  RYGGGG----------NLHFTAIRGSPEASYALILVFSVALIEKNPGAYTAFDVDNEGKFRYFFMCVSASIHAWKYCFPVMSVE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCTTGATTCTCACCCTTCTCCTCCATAGTCAAGACGTTGGAATGGAAGTTGCAGGCGCTTGGGTCGGAGCTACAGATTCGCGACTTTCCTCTCCCCTTTACTTCCT
TCATGGAGCTTCAATTTATAGTGTTGTCACTCCTCCAAATAGTACAGTGTTGCATCTTCGGTTTACAGAGGCTGCACACTGTATGCTCAATATACAGCAGGTATTTTTGG
GGTTTCAGATGCAGATGCACTCCATGCCGCCAGTTGGTTTGCTGAATGTTGTGGTTCTATTCAGTGGGAGGTGGGATGAAAACAATCGGTACAATGGGTTTAAGTCCGAC
AGTGTGCCAGTACCGGAGGGATGCACAATACAAGAGTTCAATGAATGTATCCGAAGCAAGGTATTTCCATCGGACGAGCACATGATCACTCGGTTAACCATGTACAGGAA
TGGTATCAACAAGGCTAATATAATCCGGATCACTGACGACAGGGATGTTACTTGGGTCATGTCCAACATTGGCGATGGGATGGCTAGTGACATATGCGTTGTGGCTGACC
ACTTTATGACAAGGTATGGAGGGGGCGGAAACTTGCACTTTACTGCCATCAGAGGGTCACCCGAAGCGTCGTATGCACTAATCCTTGTTTTCTCTGTTGCCCTGATCGAG
AAAAACCCAGGTGCATACACTGCTTTTGATGTGGACAATGAGGGCAAGTTCAGGTACTTTTTCATGTGTGTCTCTGCGTCCATACATGCATGGAAATACTGTTTTCCTGT
TATGTCGGTTGAAGAGGTAGATTTGGTTTTCAGAGATACACCCCCACAACAATATGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCTTGATTCTCACCCTTCTCCTCCATAGTCAAGACGTTGGAATGGAAGTTGCAGGCGCTTGGGTCGGAGCTACAGATTCGCGACTTTCCTCTCCCCTTTACTTCCT
TCATGGAGCTTCAATTTATAGTGTTGTCACTCCTCCAAATAGTACAGTGTTGCATCTTCGGTTTACAGAGGCTGCACACTGTATGCTCAATATACAGCAGGTATTTTTGG
GGTTTCAGATGCAGATGCACTCCATGCCGCCAGTTGGTTTGCTGAATGTTGTGGTTCTATTCAGTGGGAGGTGGGATGAAAACAATCGGTACAATGGGTTTAAGTCCGAC
AGTGTGCCAGTACCGGAGGGATGCACAATACAAGAGTTCAATGAATGTATCCGAAGCAAGGTATTTCCATCGGACGAGCACATGATCACTCGGTTAACCATGTACAGGAA
TGGTATCAACAAGGCTAATATAATCCGGATCACTGACGACAGGGATGTTACTTGGGTCATGTCCAACATTGGCGATGGGATGGCTAGTGACATATGCGTTGTGGCTGACC
ACTTTATGACAAGGTATGGAGGGGGCGGAAACTTGCACTTTACTGCCATCAGAGGGTCACCCGAAGCGTCGTATGCACTAATCCTTGTTTTCTCTGTTGCCCTGATCGAG
AAAAACCCAGGTGCATACACTGCTTTTGATGTGGACAATGAGGGCAAGTTCAGGTACTTTTTCATGTGTGTCTCTGCGTCCATACATGCATGGAAATACTGTTTTCCTGT
TATGTCGGTTGAAGAGGTAGATTTGGTTTTCAGAGATACACCCCCACAACAATATGCTTGA
Protein sequenceShow/hide protein sequence
MSLILTLLLHSQDVGMEVAGAWVGATDSRLSSPLYFLHGASIYSVVTPPNSTVLHLRFTEAAHCMLNIQQVFLGFQMQMHSMPPVGLLNVVVLFSGRWDENNRYNGFKSD
SVPVPEGCTIQEFNECIRSKVFPSDEHMITRLTMYRNGINKANIIRITDDRDVTWVMSNIGDGMASDICVVADHFMTRYGGGGNLHFTAIRGSPEASYALILVFSVALIE
KNPGAYTAFDVDNEGKFRYFFMCVSASIHAWKYCFPVMSVEEVDLVFRDTPPQQYA