CuGenDBv2

Gene ID	Lag0005659
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	protein TORNADO 1
Genome location	chr6:25362738..25366980
RNA-Seq Expression	Lag0005659
Synteny	Lag0005659
Gene Ontology terms	GO:0000166 - nucleotide binding (molecular function) GO:0003723 - RNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6607767.1 Protein TORNADO 1, partial [Cucurbita argyrosperma subsp. sororia]

3.4e-45

85.47

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Query:  GSKEVEELSKMVEENSTLKLLSIFNSNSITVTPLIFVVLGMNRNMEVHIWSGENGGRSSKVVEFVPGNSTVRIYRLDINDACRVAYVLGLNSTVKRLDMT
        GSK  E+LSKMVEENSTLKLLSIF+SNSI VTPLI  VLGMNRNME+HIW GENGG+SSKVVEFVPGNST+RIYRLDIN ACRVA  LGLNSTVK LDMT
Subjt:  GSKEVEELSKMVEENSTLKLLSIFNSNSITVTPLIFVVLGMNRNMEVHIWSGENGGRSSKVVEFVPGNSTVRIYRLDINDACRVAYVLGLNSTVKRLDMT

Query:  GSRLKSRWAKEFRWALE
        G RLKSRWAKEFR ALE
Subjt:  GSRLKSRWAKEFRWALE

KAG7037345.1 Protein TORNADO 1, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.4e-45

85.47

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Query:  GSKEVEELSKMVEENSTLKLLSIFNSNSITVTPLIFVVLGMNRNMEVHIWSGENGGRSSKVVEFVPGNSTVRIYRLDINDACRVAYVLGLNSTVKRLDMT
        GSK  E+LSKMVEENSTLKLLSIF+SNSI VTPLI  VLGMNRNME+HIW GENGG+SSKVVEFVPGNST+RIYRLDIN ACRVA  LGLNSTVK LDMT
Subjt:  GSKEVEELSKMVEENSTLKLLSIFNSNSITVTPLIFVVLGMNRNMEVHIWSGENGGRSSKVVEFVPGNSTVRIYRLDINDACRVAYVLGLNSTVKRLDMT

Query:  GSRLKSRWAKEFRWALE
        G RLKSRWAKEFR ALE
Subjt:  GSRLKSRWAKEFRWALE

XP_022139429.1 protein TORNADO 1 [Momordica charantia]

1.2e-45

86.32

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Query:  GSKEVEELSKMVEENSTLKLLSIFNSNSITVTPLIFVVLGMNRNMEVHIWSGENGGRSSKVVEFVPGNSTVRIYRLDINDACRVAYVLGLNSTVKRLDMT
        G K  EELSKMVEENSTLKLLSIF+SNSIT+TPLI  VL MNRNMEVHIWSGENGG+SSKVVEFVPGNST+RIYRLDIN ACRVA  LGLNSTVK LDMT
Subjt:  GSKEVEELSKMVEENSTLKLLSIFNSNSITVTPLIFVVLGMNRNMEVHIWSGENGGRSSKVVEFVPGNSTVRIYRLDINDACRVAYVLGLNSTVKRLDMT

Query:  GSRLKSRWAKEFRWALE
        G RLKSRWAKEFR ALE
Subjt:  GSRLKSRWAKEFRWALE

XP_022981357.1 protein TORNADO 1-like [Cucurbita maxima]

1.2e-45

86.32

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Query:  GSKEVEELSKMVEENSTLKLLSIFNSNSITVTPLIFVVLGMNRNMEVHIWSGENGGRSSKVVEFVPGNSTVRIYRLDINDACRVAYVLGLNSTVKRLDMT
        GSK  EELSKMVEENSTLKLLSIF+SNSI VTPLI  VLGMNRNME+HIW GENGG+SSKVVEFVPGNST+RIYRLDIN ACRVA  LGLNSTVK LDMT
Subjt:  GSKEVEELSKMVEENSTLKLLSIFNSNSITVTPLIFVVLGMNRNMEVHIWSGENGGRSSKVVEFVPGNSTVRIYRLDINDACRVAYVLGLNSTVKRLDMT

Query:  GSRLKSRWAKEFRWALE
        G RLKSRWAKEFR ALE
Subjt:  GSRLKSRWAKEFRWALE

XP_038897751.1 protein TORNADO 1 [Benincasa hispida]

2.6e-45

83.76

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Query:  GSKEVEELSKMVEENSTLKLLSIFNSNSITVTPLIFVVLGMNRNMEVHIWSGENGGRSSKVVEFVPGNSTVRIYRLDINDACRVAYVLGLNSTVKRLDMT
        GSK +EELS+MVEEN+TLKLLSIF+SN I VTPLI  VL +NRNMEVHIW+GENGG+SSKVVEFVPGNST+RIYRLDIN ACRVA  LGLNSTVK LDMT
Subjt:  GSKEVEELSKMVEENSTLKLLSIFNSNSITVTPLIFVVLGMNRNMEVHIWSGENGGRSSKVVEFVPGNSTVRIYRLDINDACRVAYVLGLNSTVKRLDMT

Query:  GSRLKSRWAKEFRWALE
        G RLKSRWAKEFRWALE
Subjt:  GSRLKSRWAKEFRWALE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LGK5 COR domain-containing protein

8.2e-45

81.2

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Query:  GSKEVEELSKMVEENSTLKLLSIFNSNSITVTPLIFVVLGMNRNMEVHIWSGENGGRSSKVVEFVPGNSTVRIYRLDINDACRVAYVLGLNSTVKRLDMT
        GSK +EELSKM EEN+TLKLLSIF+SNS+TVTPLI  VL MNR+MEVHIW+G+N  +SSKVVEFVPGNST+RIYRLDIN ACR+A V+GLNSTVK LDMT
Subjt:  GSKEVEELSKMVEENSTLKLLSIFNSNSITVTPLIFVVLGMNRNMEVHIWSGENGGRSSKVVEFVPGNSTVRIYRLDINDACRVAYVLGLNSTVKRLDMT

Query:  GSRLKSRWAKEFRWALE
        G RLKSRWAKEFRWALE
Subjt:  GSRLKSRWAKEFRWALE

A0A1S3CIK7 protein TORNADO 1

2.8e-45

84.62

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Query:  GSKEVEELSKMVEENSTLKLLSIFNSNSITVTPLIFVVLGMNRNMEVHIWSGENGGRSSKVVEFVPGNSTVRIYRLDINDACRVAYVLGLNSTVKRLDMT
        GSK +EELSKMVEEN+TLKLLSIF+SNS+TVTPLI  VL MNR+MEVHIW GENGG+SSKVVEFVPGNST+RIYRLDIN A RVA VLGLN TVK LDMT
Subjt:  GSKEVEELSKMVEENSTLKLLSIFNSNSITVTPLIFVVLGMNRNMEVHIWSGENGGRSSKVVEFVPGNSTVRIYRLDINDACRVAYVLGLNSTVKRLDMT

Query:  GSRLKSRWAKEFRWALE
        G RLKSRWAKEFRWALE
Subjt:  GSRLKSRWAKEFRWALE

A0A5D3CCL7 Protein TORNADO 1

2.8e-45

84.62

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Query:  GSKEVEELSKMVEENSTLKLLSIFNSNSITVTPLIFVVLGMNRNMEVHIWSGENGGRSSKVVEFVPGNSTVRIYRLDINDACRVAYVLGLNSTVKRLDMT
        GSK +EELSKMVEEN+TLKLLSIF+SNS+TVTPLI  VL MNR+MEVHIW GENGG+SSKVVEFVPGNST+RIYRLDIN A RVA VLGLN TVK LDMT
Subjt:  GSKEVEELSKMVEENSTLKLLSIFNSNSITVTPLIFVVLGMNRNMEVHIWSGENGGRSSKVVEFVPGNSTVRIYRLDINDACRVAYVLGLNSTVKRLDMT

Query:  GSRLKSRWAKEFRWALE
        G RLKSRWAKEFRWALE
Subjt:  GSRLKSRWAKEFRWALE

A0A6J1CD03 protein TORNADO 1

5.6e-46

86.32

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Query:  GSKEVEELSKMVEENSTLKLLSIFNSNSITVTPLIFVVLGMNRNMEVHIWSGENGGRSSKVVEFVPGNSTVRIYRLDINDACRVAYVLGLNSTVKRLDMT
        G K  EELSKMVEENSTLKLLSIF+SNSIT+TPLI  VL MNRNMEVHIWSGENGG+SSKVVEFVPGNST+RIYRLDIN ACRVA  LGLNSTVK LDMT
Subjt:  GSKEVEELSKMVEENSTLKLLSIFNSNSITVTPLIFVVLGMNRNMEVHIWSGENGGRSSKVVEFVPGNSTVRIYRLDINDACRVAYVLGLNSTVKRLDMT

Query:  GSRLKSRWAKEFRWALE
        G RLKSRWAKEFR ALE
Subjt:  GSRLKSRWAKEFRWALE

A0A6J1ITR3 protein TORNADO 1-like

5.6e-46

86.32

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Query:  GSKEVEELSKMVEENSTLKLLSIFNSNSITVTPLIFVVLGMNRNMEVHIWSGENGGRSSKVVEFVPGNSTVRIYRLDINDACRVAYVLGLNSTVKRLDMT
        GSK  EELSKMVEENSTLKLLSIF+SNSI VTPLI  VLGMNRNME+HIW GENGG+SSKVVEFVPGNST+RIYRLDIN ACRVA  LGLNSTVK LDMT
Subjt:  GSKEVEELSKMVEENSTLKLLSIFNSNSITVTPLIFVVLGMNRNMEVHIWSGENGGRSSKVVEFVPGNSTVRIYRLDINDACRVAYVLGLNSTVKRLDMT

Query:  GSRLKSRWAKEFRWALE
        G RLKSRWAKEFR ALE
Subjt:  GSRLKSRWAKEFRWALE

SwissProt top hits

e value

%identity

Alignment

Q9FJ57 Protein TORNADO 1

1.1e-35

63.56

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Query:  GSKEVEELSKMVEENSTLKLLSIFNSNSITVTPLIFVVLGMNRNMEVHIWSGEN-GGRSSKVVEFVPGNSTVRIYRLDINDACRVAYVLGLNSTVKRLDM
        GSK  EELS+M+E NS+LKL SIF+S+  T TPLI  VLGMNR MEVH+WSG++   RS K+VEF+P + T+RIY++DI+ +CRVA  LG+N+TV+ LDM
Subjt:  GSKEVEELSKMVEENSTLKLLSIFNSNSITVTPLIFVVLGMNRNMEVHIWSGEN-GGRSSKVVEFVPGNSTVRIYRLDINDACRVAYVLGLNSTVKRLDM

Query:  TGSRLKSRWAKEFRWALE
        TG++L SRWAKEFRW LE
Subjt:  TGSRLKSRWAKEFRWALE

Arabidopsis top hits

e value

%identity

Alignment

AT5G55540.1 tornado 1

8.1e-37

63.56

Show/hide

Query:  GSKEVEELSKMVEENSTLKLLSIFNSNSITVTPLIFVVLGMNRNMEVHIWSGEN-GGRSSKVVEFVPGNSTVRIYRLDINDACRVAYVLGLNSTVKRLDM
        GSK  EELS+M+E NS+LKL SIF+S+  T TPLI  VLGMNR MEVH+WSG++   RS K+VEF+P + T+RIY++DI+ +CRVA  LG+N+TV+ LDM
Subjt:  GSKEVEELSKMVEENSTLKLLSIFNSNSITVTPLIFVVLGMNRNMEVHIWSGEN-GGRSSKVVEFVPGNSTVRIYRLDINDACRVAYVLGLNSTVKRLDM

Query:  TGSRLKSRWAKEFRWALE
        TG++L SRWAKEFRW LE
Subjt:  TGSRLKSRWAKEFRWALE

Sequences

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CDS sequence

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ATGAAAAAGCCATTAAATCTAGCTAAAGATAAGGAAAAAGAAAGGAAACACTTTATATCGTCGAACCCGACACGTCCCCATCTCGATCTTCGCGCCACCAACGTCTCGAC
GCTATGTCCTGCCGCTTGTTTTGATTATGGAAAAACCGAGAGCGTCGAGACGCTCTTGTTACAACGTCTCGACGCTGTGACTGTTGCCGCCCAATTTAAACAAGGAAAGG
CAGCATCGAGACGCTCCAAGAGTGGCGTCTCGACGCTGACCTCCGTCTCGCGAAATCGCGACGACGTCGCAACGCTTCTGCGTCTAGAAGCAAAATCTGGGCATTCCAGC
GGCTGTTTCTCGCATTTGGCCTCGTTTTTGGACGTGAATTTCAACGGTCTTCATCATCGAACACCCTATTCTAGACCCGAACTTACAGAGGATAATAGATTTACAAAATA
TGCCCAAAAATGCAGGGGCCTTTACATTGAGCCATTCAAGAAAACGATCGAAAACGCAGAAACCTTCTTGTGCGAACACCACCAATCGGCTACACCGTGGAAGAATAAAG
GGAAGGGTGAAAGAGAAGAAGAAGAAAAAGGGGATGGAGGGAAGAAGAAGAAGAAAAAGGGGATGGAGGGAAGAAGAAGAAAAGAAAAGAAAAAGAGAAAAAAAAGGAAT
GACGGTGACGGTTGCGGGCGGCTGTCAACGATGGACTATGGTGGTGGTGATGGTGGTCGACTGTCGAAGAAGGAAGAAGAGAAGGGAAAAAGAAGAGAAAGAGAAGAGAA
GATAAAAAAAATAAAAAATTATCGTCGTTGGTCTCCGGCACCAGCGACGGGCGGCGGCCGGCTGTCTCCGACGACCGATCTGGAAGAATCCCAGATCAGGAACAATCCTA
GACTGTCGGCGAAAAGAGATGGCAAGAGGGAAGGAGATGGTGAGGGAGAGAGAAAGAAAGAGGAAAAAAAAGAGAAAAAATTGGGGAAAGGAGAGGGGTCGAAAGAAGTG
GAAGAACTCTCGAAGATGGTTGAAGAAAACTCAACTCTGAAGTTGTTGTCAATTTTTAACTCAAATTCAATCACAGTAACCCCATTGATATTTGTAGTTTTGGGAATGAA
TAGGAATATGGAAGTGCACATTTGGAGCGGAGAAAATGGAGGAAGAAGTTCAAAGGTGGTTGAGTTTGTGCCTGGGAATAGTACAGTCAGAATCTATAGGCTAGACATAA
ACGATGCTTGCAGGGTTGCCTATGTGCTCGGGTTAAACTCGACGGTTAAGAGGCTCGACATGACTGGAAGCCGACTGAAATCTCGGTGGGCAAAGGAGTTCCGTTGGGCA
TTGGAGCCCTTTGTTTTGCGCCGGCGACGCCTCCTCCCTCTCCTTCTTTTTTATTAA

mRNA sequence

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Protein sequence

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MKKPLNLAKDKEKERKHFISSNPTRPHLDLRATNVSTLCPAACFDYGKTESVETLLLQRLDAVTVAAQFKQGKAASRRSKSGVSTLTSVSRNRDDVATLLRLEAKSGHSS
GCFSHLASFLDVNFNGLHHRTPYSRPELTEDNRFTKYAQKCRGLYIEPFKKTIENAETFLCEHHQSATPWKNKGKGEREEEEKGDGGKKKKKKGMEGRRRKEKKKRKKRN
DGDGCGRLSTMDYGGGDGGRLSKKEEEKGKRREREEKIKKIKNYRRWSPAPATGGGRLSPTTDLEESQIRNNPRLSAKRDGKREGDGEGERKKEEKKEKKLGKGEGSKEV
EELSKMVEENSTLKLLSIFNSNSITVTPLIFVVLGMNRNMEVHIWSGENGGRSSKVVEFVPGNSTVRIYRLDINDACRVAYVLGLNSTVKRLDMTGSRLKSRWAKEFRWA
LEPFVLRRRRLLPLLLFY

Lag0005659 (gene) of Sponge gourd (AG-4) v1 genome