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Lag0005667 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005667
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr6:25590365..25591718
RNA-Seq ExpressionLag0005667
SyntenyLag0005667
Gene Ontology termsGO:0005488 - binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH07150.1 TatD related DNase [Prunus dulcis]4.5e-2851.64Show/hide
Query:  ETTEDYRSRKKEGVIFKIDFEKAYDHVDWNFLDNILAKKGFGYQWR-----------YSILINGCPKGRIQASQGLRLGDPLSRFLFLLVVDVLSRMISE
        E  E+ R + ++G++FKIDFEKAYDHV+WNF+D++LA+KGFG +WR           +SI+ING P+G+ +AS+GLR GDPLS FLF LV DVLSR+I  
Subjt:  ETTEDYRSRKKEGVIFKIDFEKAYDHVDWNFLDNILAKKGFGYQWR-----------YSILINGCPKGRIQASQGLRLGDPLSRFLFLLVVDVLSRMISE

Query:  RVEVGIIEGFKAGVESVSLSHL
          +V ++ G  +G + V +SHL
Subjt:  RVEVGIIEGFKAGVESVSLSHL

BBN69274.1 TatD related DNase [Prunus dulcis]3.8e-2750Show/hide
Query:  ETTEDYRSRKKEGVIFKIDFEKAYDHVDWNFLDNILAKKGFGYQWR-----------YSILINGCPKGRIQASQGLRLGDPLSRFLFLLVVDVLSRMISE
        E  E+ R + ++G++FKIDFEKAYDHV+W F+D+++A+KGFG +WR           +SI+ING P+G+ +AS+GLR GDPLS FLF LV DVLSR+I  
Subjt:  ETTEDYRSRKKEGVIFKIDFEKAYDHVDWNFLDNILAKKGFGYQWR-----------YSILINGCPKGRIQASQGLRLGDPLSRFLFLLVVDVLSRMISE

Query:  RVEVGIIEGFKAGVESVSLSHL
          +V ++ G  +G + V +SHL
Subjt:  RVEVGIIEGFKAGVESVSLSHL

PRQ36601.1 putative RNA-directed DNA polymerase [Rosa chinensis]3.8e-2746.75Show/hide
Query:  REEIEDKVVWITGASRGIGPRRVYLKKTNFGYETTEDYRSRKKEGVIFKIDFEKAYDHVDWNFLDNILAKKGFGYQWR-----------YSILINGCPKG
        RE + D    I+GA       R  L       E  ++ R +KKEG++FKIDFEKAYDHV+WNFLD  +  KGFG +WR           +SI ING P+G
Subjt:  REEIEDKVVWITGASRGIGPRRVYLKKTNFGYETTEDYRSRKKEGVIFKIDFEKAYDHVDWNFLDNILAKKGFGYQWR-----------YSILINGCPKG

Query:  RIQASQGLRLGDPLSRFLFLLVVDVLSRMISERVEVGIIEGFKAGVESVSLSHL
        +  AS+GLR GDPLS FLF LVVDVL R++    +  +IEG   G E V ++HL
Subjt:  RIQASQGLRLGDPLSRFLFLLVVDVLSRMISERVEVGIIEGFKAGVESVSLSHL

VVA20479.1 Hypothetical predicted protein, partial [Prunus dulcis]6.5e-2750.82Show/hide
Query:  ETTEDYRSRKKEGVIFKIDFEKAYDHVDWNFLDNILAKKGFGYQWR-----------YSILINGCPKGRIQASQGLRLGDPLSRFLFLLVVDVLSRMISE
        E  E+ R + ++G++FKIDFEKAYDHV+WNF+D++LA+KGFG +WR           +SI+ING P+G+ +AS+GLR GDPLS FLF LV DVLSR+I  
Subjt:  ETTEDYRSRKKEGVIFKIDFEKAYDHVDWNFLDNILAKKGFGYQWR-----------YSILINGCPKGRIQASQGLRLGDPLSRFLFLLVVDVLSRMISE

Query:  RVEVGIIEGFKAGVESVSLSHL
          +V ++ G  +G + V +S L
Subjt:  RVEVGIIEGFKAGVESVSLSHL

XP_009335445.1 PREDICTED: uncharacterized protein LOC103928158 [Pyrus x bretschneideri]1.7e-2755.74Show/hide
Query:  ETTEDYRSRKKEGVIFKIDFEKAYDHVDWNFLDNILAKKGFGYQWR-----------YSILINGCPKGRIQASQGLRLGDPLSRFLFLLVVDVLSRMISE
        E  E+ R +K+EG++FKIDFEKAYDHV+W FLD IL +KGFG +WR           +SILING PKG+  AS+ LR GDPLS FLF LVVDVLSR++ +
Subjt:  ETTEDYRSRKKEGVIFKIDFEKAYDHVDWNFLDNILAKKGFGYQWR-----------YSILINGCPKGRIQASQGLRLGDPLSRFLFLLVVDVLSRMISE

Query:  RVEVGIIEGFKAGVESVSLSHL
          E  +I+G   G E V +SHL
Subjt:  RVEVGIIEGFKAGVESVSLSHL

TrEMBL top hitse value%identityAlignment
A0A803PZR9 Uncharacterized protein1.1e-2950.38Show/hide
Query:  RVYLKKTNFGYETTEDYRSRKKEGVIFKIDFEKAYDHVDWNFLDNILAKKGFGYQWR-----------YSILINGCPKGRIQASQGLRLGDPLSRFLFLL
        R  L       ET EDYRSR K G++FKIDFEKAYD V+W+FLD ++ KKGFG  WR           +SI +NG P+G+ +AS+GLR GDPLS FLF L
Subjt:  RVYLKKTNFGYETTEDYRSRKKEGVIFKIDFEKAYDHVDWNFLDNILAKKGFGYQWR-----------YSILINGCPKGRIQASQGLRLGDPLSRFLFLL

Query:  VVDVLSRMISERVEVGIIEGFKAGVESVSLSHL
        V D+L RM+ + V  G + GF+ G + + +SHL
Subjt:  VVDVLSRMISERVEVGIIEGFKAGVESVSLSHL

M5VS59 Reverse transcriptase domain-containing protein (Fragment)5.7e-2952.46Show/hide
Query:  ETTEDYRSRKKEGVIFKIDFEKAYDHVDWNFLDNILAKKGFGYQWR-----------YSILINGCPKGRIQASQGLRLGDPLSRFLFLLVVDVLSRMISE
        E  E+ R +K++G++FKIDFEKAYDHV+WNF+D++LA+KGFG +WR           +SI+ING P+G+ +AS+GLR GDPLS FLF LV DVLSR+I  
Subjt:  ETTEDYRSRKKEGVIFKIDFEKAYDHVDWNFLDNILAKKGFGYQWR-----------YSILINGCPKGRIQASQGLRLGDPLSRFLFLLVVDVLSRMISE

Query:  RVEVGIIEGFKAGVESVSLSHL
          +V ++ G  +G + V +SHL
Subjt:  RVEVGIIEGFKAGVESVSLSHL

M5WJ76 Reverse transcriptase domain-containing protein (Fragment)7.5e-2951.64Show/hide
Query:  ETTEDYRSRKKEGVIFKIDFEKAYDHVDWNFLDNILAKKGFGYQWR-----------YSILINGCPKGRIQASQGLRLGDPLSRFLFLLVVDVLSRMISE
        E  E+ R +K++G++FKIDFEKAYDHV+WNF+D+++A+KGFG +WR           +SI+ING P+G+ +AS+GLR GDPLS FLF LV DVLSR+I  
Subjt:  ETTEDYRSRKKEGVIFKIDFEKAYDHVDWNFLDNILAKKGFGYQWR-----------YSILINGCPKGRIQASQGLRLGDPLSRFLFLLVVDVLSRMISE

Query:  RVEVGIIEGFKAGVESVSLSHL
          +V ++ G  +G + V +SHL
Subjt:  RVEVGIIEGFKAGVESVSLSHL

M5WKV4 Reverse transcriptase domain-containing protein (Fragment)7.5e-2952.46Show/hide
Query:  ETTEDYRSRKKEGVIFKIDFEKAYDHVDWNFLDNILAKKGFGYQWR-----------YSILINGCPKGRIQASQGLRLGDPLSRFLFLLVVDVLSRMISE
        E  E+ R +K++G++FKIDFEKAYDHV+WNF+D++LA+KGFG +WR           +SI+ING P+G+ +AS+GLR GDPLS FLF LV DVLSR+I  
Subjt:  ETTEDYRSRKKEGVIFKIDFEKAYDHVDWNFLDNILAKKGFGYQWR-----------YSILINGCPKGRIQASQGLRLGDPLSRFLFLLVVDVLSRMISE

Query:  RVEVGIIEGFKAGVESVSLSHL
          +V ++ G  +G + V +SHL
Subjt:  RVEVGIIEGFKAGVESVSLSHL

M5X4S0 Reverse transcriptase domain-containing protein (Fragment)7.5e-2951.64Show/hide
Query:  ETTEDYRSRKKEGVIFKIDFEKAYDHVDWNFLDNILAKKGFGYQWR-----------YSILINGCPKGRIQASQGLRLGDPLSRFLFLLVVDVLSRMISE
        E  E+ R +K++G++FKIDFEKAYDHV+WNF+D+++A+KGFG +WR           +SI+ING P+G+ +AS+GLR GDPLS FLF LV DVLSR+I  
Subjt:  ETTEDYRSRKKEGVIFKIDFEKAYDHVDWNFLDNILAKKGFGYQWR-----------YSILINGCPKGRIQASQGLRLGDPLSRFLFLLVVDVLSRMISE

Query:  RVEVGIIEGFKAGVESVSLSHL
          +V ++ G  +G + V +SHL
Subjt:  RVEVGIIEGFKAGVESVSLSHL

SwissProt top hitse value%identityAlignment
O00370 LINE-1 retrotransposable element ORF2 protein5.0e-0633.33Show/hide
Query:  RSRKKEGVIFKIDFEKAYDHVDWNFLDNILAKKGFGYQW-----------RYSILINGCPKGRIQASQGLRLGDPLSRFLFLLVVDVLSRMISERVEVGI
        R++ K  VI  ID EKA+D +   F+   L K G    +             +I++NG          G R G PLS  LF +V++VL+R I +  E   
Subjt:  RSRKKEGVIFKIDFEKAYDHVDWNFLDNILAKKGFGYQW-----------RYSILINGCPKGRIQASQGLRLGDPLSRFLFLLVVDVLSRMISERVEVGI

Query:  IEGFKAGVESVSLS
        I+G + G E V LS
Subjt:  IEGFKAGVESVSLS

P08548 LINE-1 reverse transcriptase homolog2.1e-0427.39Show/hide
Query:  KKHVKREEIEDKVVWITGASRGIGPRRVYLKKTNFGYETTEDYRSRKKEGVIFKIDFEKAYDHVDWNFLDNILAKKGFGYQW-----------RYSILIN
        ++H+K+    D+V +I G+      R    K  N         + + K+ +I  ID EKA+D++   F+   L K G    +             +I++N
Subjt:  KKHVKREEIEDKVVWITGASRGIGPRRVYLKKTNFGYETTEDYRSRKKEGVIFKIDFEKAYDHVDWNFLDNILAKKGFGYQW-----------RYSILIN

Query:  GCPKGRIQASQGLRLGDPLSRFLFLLVVDVLSRMISERVEVGIIEGFKAGVESVSLS
        G          G R G PLS  LF +V++VL+  I E      I+G   G E + LS
Subjt:  GCPKGRIQASQGLRLGDPLSRFLFLLVVDVLSRMISERVEVGIIEGFKAGVESVSLS

P11369 LINE-1 retrotransposable element ORF2 protein1.9e-0531.15Show/hide
Query:  RKKEGVIFKIDFEKAYDHVDWNFLDNILAKKGFGYQWRY-------------SILINGCPKGRIQASQGLRLGDPLSRFLFLLVVDVLSRMISERVEVGI
        + K  +I  +D EKA+D +   F+  +L + G   Q  Y             +I +NG     I    G R G PLS +LF +V++VL+R I ++ E   
Subjt:  RKKEGVIFKIDFEKAYDHVDWNFLDNILAKKGFGYQWRY-------------SILINGCPKGRIQASQGLRLGDPLSRFLFLLVVDVLSRMISERVEVGI

Query:  IEGFKAGVESVSLSHLLISSLV
        I+G + G E V +S L    +V
Subjt:  IEGFKAGVESVSLSHLLISSLV

P92555 Uncharacterized mitochondrial protein AtMg012503.5e-0739.47Show/hide
Query:  GFGYQWRYSI-LINGCPKGRIQASQGLRLGDPLSRFLFLLVVDVLSRMISERVEVGIIEGFKAGVESVSLSHLLIS
        G+G    Y + +ING P+G +  S+GLR GDPLS +LF+L  +VLS +     E G + G +    S  ++HLL +
Subjt:  GFGYQWRYSI-LINGCPKGRIQASQGLRLGDPLSRFLFLLVVDVLSRMISERVEVGIIEGFKAGVESVSLSHLLIS

Arabidopsis top hitse value%identityAlignment
AT3G03330.1 NAD(P)-binding Rossmann-fold superfamily protein5.1e-1471.43Show/hide
Query:  MLVLVFSSVSLFLLLLLLFRFATAHGDFTLMSKKHVKREEIEDKVVWITGASRGIG
        ML L+F S+   LL++LLF+FA A GDFTL+SKKHVKRE I+ KVVWITGASRGIG
Subjt:  MLVLVFSSVSLFLLLLLLFRFATAHGDFTLMSKKHVKREEIEDKVVWITGASRGIG

ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)2.5e-0839.47Show/hide
Query:  GFGYQWRYSI-LINGCPKGRIQASQGLRLGDPLSRFLFLLVVDVLSRMISERVEVGIIEGFKAGVESVSLSHLLIS
        G+G    Y + +ING P+G +  S+GLR GDPLS +LF+L  +VLS +     E G + G +    S  ++HLL +
Subjt:  GFGYQWRYSI-LINGCPKGRIQASQGLRLGDPLSRFLFLLVVDVLSRMISERVEVGIIEGFKAGVESVSLSHLLIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGGTTCTCGTCTTTTCCTCTGTTTCTCTGTTTCTTCTTCTCCTTCTTCTGTTCAGATTCGCCACCGCTCATGGCGACTTCACTTTAATGTCCAAAAAGCATGTCAA
GCGAGAGGAAATTGAAGATAAGGTCGTCTGGATTACTGGTGCTAGCCGAGGAATTGGCCCAAGGCGCGTTTATCTCAAGAAGACAAATTTTGGATATGAGACTACTGAGG
ATTATAGAAGTAGAAAGAAAGAGGGAGTCATCTTTAAGATTGATTTTGAGAAGGCGTATGATCATGTGGATTGGAATTTTCTAGATAACATCCTGGCTAAAAAGGGTTTT
GGATACCAATGGAGGTATTCGATTCTCATTAATGGGTGTCCTAAGGGTAGGATCCAAGCTTCTCAAGGTCTTAGGCTAGGTGATCCTTTATCGCGCTTCCTTTTTCTTTT
GGTGGTGGATGTTCTGAGTAGGATGATTTCAGAAAGGGTCGAGGTAGGTATCATTGAAGGTTTTAAGGCTGGTGTGGAGAGCGTCTCTTTATCTCATCTCCTTATCTCAT
CTCTTGTTTGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTGGTTCTCGTCTTTTCCTCTGTTTCTCTGTTTCTTCTTCTCCTTCTTCTGTTCAGATTCGCCACCGCTCATGGCGACTTCACTTTAATGTCCAAAAAGCATGTCAA
GCGAGAGGAAATTGAAGATAAGGTCGTCTGGATTACTGGTGCTAGCCGAGGAATTGGCCCAAGGCGCGTTTATCTCAAGAAGACAAATTTTGGATATGAGACTACTGAGG
ATTATAGAAGTAGAAAGAAAGAGGGAGTCATCTTTAAGATTGATTTTGAGAAGGCGTATGATCATGTGGATTGGAATTTTCTAGATAACATCCTGGCTAAAAAGGGTTTT
GGATACCAATGGAGGTATTCGATTCTCATTAATGGGTGTCCTAAGGGTAGGATCCAAGCTTCTCAAGGTCTTAGGCTAGGTGATCCTTTATCGCGCTTCCTTTTTCTTTT
GGTGGTGGATGTTCTGAGTAGGATGATTTCAGAAAGGGTCGAGGTAGGTATCATTGAAGGTTTTAAGGCTGGTGTGGAGAGCGTCTCTTTATCTCATCTCCTTATCTCAT
CTCTTGTTTGCTGA
Protein sequenceShow/hide protein sequence
MLVLVFSSVSLFLLLLLLFRFATAHGDFTLMSKKHVKREEIEDKVVWITGASRGIGPRRVYLKKTNFGYETTEDYRSRKKEGVIFKIDFEKAYDHVDWNFLDNILAKKGF
GYQWRYSILINGCPKGRIQASQGLRLGDPLSRFLFLLVVDVLSRMISERVEVGIIEGFKAGVESVSLSHLLISSLVC