CuGenDBv2

Gene ID	Lag0005671
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	chr6:25812512..25813218
RNA-Seq Expression	Lag0005671
Synteny	Lag0005671
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0032549 - ribonucleoside binding (molecular function)
InterPro domains	IPR007120 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain IPR015712 - DNA-directed RNA polymerase, subunit 2 IPR037033 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

QJS52312.1 RNA polymerase beta subunit [Indofevillea khasiana]

2.9e-59

99.15

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Query:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM
        CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKN+LVAYM
Subjt:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM

Query:  PWEGYNSEDAVLISERLV
        PWEGYNSEDAVLISERLV
Subjt:  PWEGYNSEDAVLISERLV

YP_009738193.1 RNA polymerase beta subunit [Siraitia siamensis]

2.9e-59

99.15

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Query:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM
        CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKN+LVAYM
Subjt:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM

Query:  PWEGYNSEDAVLISERLV
        PWEGYNSEDAVLISERLV
Subjt:  PWEGYNSEDAVLISERLV

YP_009752827.1 RNA polymerase subunit beta [Baijiania yunnanensis]

2.9e-59

99.15

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Query:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM
        CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKN+LVAYM
Subjt:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM

Query:  PWEGYNSEDAVLISERLV
        PWEGYNSEDAVLISERLV
Subjt:  PWEGYNSEDAVLISERLV

YP_009753166.1 RNA polymerase subunit beta [Trichosanthes truncata]

2.9e-59

99.15

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Query:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM
        CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKN+LVAYM
Subjt:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM

Query:  PWEGYNSEDAVLISERLV
        PWEGYNSEDAVLISERLV
Subjt:  PWEGYNSEDAVLISERLV

YP_009753697.1 RNA polymerase subunit beta [Trichosanthes nervifolia]

2.9e-59

99.15

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Query:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM
        CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKN+LVAYM
Subjt:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM

Query:  PWEGYNSEDAVLISERLV
        PWEGYNSEDAVLISERLV
Subjt:  PWEGYNSEDAVLISERLV

TrEMBL top hits

e value

%identity

Alignment

A0A2Z2CGF9 DNA-directed RNA polymerase subunit beta

1.4e-59

99.15

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Query:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM
        CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKN+LVAYM
Subjt:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM

Query:  PWEGYNSEDAVLISERLV
        PWEGYNSEDAVLISERLV
Subjt:  PWEGYNSEDAVLISERLV

A0A6C0U919 DNA-directed RNA polymerase subunit beta

1.4e-59

99.15

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Query:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM
        CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKN+LVAYM
Subjt:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM

Query:  PWEGYNSEDAVLISERLV
        PWEGYNSEDAVLISERLV
Subjt:  PWEGYNSEDAVLISERLV

A0A6H0ENW9 DNA-directed RNA polymerase subunit beta

1.4e-59

99.15

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Query:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM
        CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKN+LVAYM
Subjt:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM

Query:  PWEGYNSEDAVLISERLV
        PWEGYNSEDAVLISERLV
Subjt:  PWEGYNSEDAVLISERLV

A0A6H0ERZ6 DNA-directed RNA polymerase subunit beta

1.4e-59

99.15

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Query:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM
        CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKN+LVAYM
Subjt:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM

Query:  PWEGYNSEDAVLISERLV
        PWEGYNSEDAVLISERLV
Subjt:  PWEGYNSEDAVLISERLV

A0A6H0EVG0 DNA-directed RNA polymerase subunit beta

1.4e-59

99.15

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Query:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM
        CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKN+LVAYM
Subjt:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM

Query:  PWEGYNSEDAVLISERLV
        PWEGYNSEDAVLISERLV
Subjt:  PWEGYNSEDAVLISERLV

SwissProt top hits

e value

%identity

Alignment

A4GYQ0 DNA-directed RNA polymerase subunit beta

1.9e-53

88.14

Show/hide

Query:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM
        CIVGTGLERQVA DSGV AIAEH GKIIYTD DKII SGNGYT  IPLVMYQRSNKNTCM QK+QV +GKCIK+GQ+LADGAATVGGELALGKNILVAYM
Subjt:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM

Query:  PWEGYNSEDAVLISERLV
        PWEGYN EDAVLISERLV
Subjt:  PWEGYNSEDAVLISERLV

Q09FW9 DNA-directed RNA polymerase subunit beta

3.2e-53

85.6

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Query:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM
        CIVGTGLERQ A DSGV+AIAEH GKIIYTDTDKII SGNG T  IPLVMYQRSNKNTCM QK QV +GKCIKKGQILADGAATVGGELALGKN+LVAYM
Subjt:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM

Query:  PWEGYNSEDAVLISERLVGVHYGRI
        PWEGYN EDAVLISERLV   YG I
Subjt:  PWEGYNSEDAVLISERLVGVHYGRI

Q0ZJ28 DNA-directed RNA polymerase subunit beta

2.4e-53

84.8

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Query:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM
        CIVGTGLERQ A DSGV  IAEH GKI+YTDTDKII SGNG T  IPLVMYQRSNKNTCM QK+QV +GKCIKKGQILADGAATVGGELALGKN+LVAYM
Subjt:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM

Query:  PWEGYNSEDAVLISERLVGVHYGRI
        PWEGYNSEDAVLISERLV   YG I
Subjt:  PWEGYNSEDAVLISERLVGVHYGRI

Q14FG5 DNA-directed RNA polymerase subunit beta

1.9e-53

88.14

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Query:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM
        CIVGTGLERQVA DSGV AIAEH GKIIYTD DKII SGNGYT  IPLVMYQRSNKNTCM QK+QV +GKCIK+GQ+LADGAATVGGELALGKNILVAYM
Subjt:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM

Query:  PWEGYNSEDAVLISERLV
        PWEGYN EDAVLISERLV
Subjt:  PWEGYNSEDAVLISERLV

Q4VZP1 DNA-directed RNA polymerase subunit beta

2.4e-61

97.46

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Query:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM
        CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKN+LVAYM
Subjt:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM

Query:  PWEGYNSEDAVLISERLV
        PWEGYN EDAVLISERL+
Subjt:  PWEGYNSEDAVLISERLV

Arabidopsis top hits

e value

%identity

Alignment

ATCG00190.1 RNA polymerase subunit beta

1.5e-53

Show/hide

Query:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM
        CIVGTGLERQVA DSGV AIAEH GKI+YTDT+KI+FSGNG T  IPL+MYQRSNKNTCM QK QV +GKCIKKGQILADGAATVGGELALGKNILVAYM
Subjt:  CIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYM

Query:  PWEGYNSEDAVLISERLVGVHYGRI
        PWEGYN EDAVLISE LV   YG I
Subjt:  PWEGYNSEDAVLISERLVGVHYGRI

Sequences

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CDS sequence

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ATGTGCATTGTTGGAACTGGGTTGGAACGCCAAGTGGCTCGAGATTCAGGGGTTGCCGCTATAGCCGAACACGGGGGAAAGATCATTTATACTGATACTGACAAGATCAT
TTTTTCGGGCAATGGGTATACTCGAAGAATTCCATTAGTTATGTATCAACGTTCTAACAAAAATACTTGTATGCAGCAAAAATCCCAGGTTCATCAGGGTAAATGCATTA
AAAAAGGGCAAATTTTAGCGGACGGTGCTGCTACAGTTGGTGGCGAACTTGCTTTGGGAAAAAACATATTAGTAGCTTATATGCCATGGGAAGGTTACAATTCTGAAGAT
GCGGTACTAATTAGCGAGCGTCTGGTAGGAGTACATTATGGCAGGATCAGTCACCCGGGCAAACCAACCCTCCTCCAAGAAGAATTGTGCTATGCGCCCCCGATCCCTAT
AGAGCGAAAGAGCTGCCTGGTGATCCCTAGGTTGCAGCACGTCCGAACGTTAACTCCTCGCGCCGCTGCCGCCGTTTCTAGGACCGACCGACGCCTCACCTGCACAGGTA
CCTACGTAGTGTAG

mRNA sequence

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Protein sequence

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MCIVGTGLERQVARDSGVAAIAEHGGKIIYTDTDKIIFSGNGYTRRIPLVMYQRSNKNTCMQQKSQVHQGKCIKKGQILADGAATVGGELALGKNILVAYMPWEGYNSED
AVLISERLVGVHYGRISHPGKPTLLQEELCYAPPIPIERKSCLVIPRLQHVRTLTPRAAAAVSRTDRRLTCTGTYVV

Lag0005671 (gene) of Sponge gourd (AG-4) v1 genome