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Lag0005703 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005703
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr6:26523502..26523902
RNA-Seq ExpressionLag0005703
SyntenyLag0005703
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
VFQ70835.1 unnamed protein product [Cuscuta campestris]1.7e-0628.8Show/hide
Query:  MGNRFTWQN-NQPGTTFIHKRLDKCIDHRVIEAALQESEDTHYARNNKSH-----------------FKFKEAWTLHEDCVSTIQTGWEKGGGDDSPNNL
        +G+ FTW +    G T+  +RLD+ + H  + A  Q+ E  H A+ N  H                 F+F   WTLHE+ + T++  WE          L
Subjt:  MGNRFTWQN-NQPGTTFIHKRLDKCIDHRVIEAALQESEDTHYARNNKSH-----------------FKFKEAWTLHEDCVSTIQTGWEKGGGDDSPNNL

Query:  LTRIRSVTEELKRWGRNKTGKIQNK
        L ++++V + LK+W ++  G I +K
Subjt:  LTRIRSVTEELKRWGRNKTGKIQNK

VFQ91219.1 unnamed protein product [Cuscuta campestris]2.2e-0628.8Show/hide
Query:  MGNRFTWQN-NQPGTTFIHKRLDKCIDHRVIEAALQESEDTHYARNNKSH-----------------FKFKEAWTLHEDCVSTIQTGWEKGGGDDSPNNL
        +G+ FTW   +  G T+  +RLD+ + H  + A  Q+ E  H A+ N  H                 F+F   WTLHE+ + T++  WE          L
Subjt:  MGNRFTWQN-NQPGTTFIHKRLDKCIDHRVIEAALQESEDTHYARNNKSH-----------------FKFKEAWTLHEDCVSTIQTGWEKGGGDDSPNNL

Query:  LTRIRSVTEELKRWGRNKTGKIQNK
        L ++++V + LK+W ++  G I +K
Subjt:  LTRIRSVTEELKRWGRNKTGKIQNK

XP_023915655.1 uncharacterized protein LOC112027215 [Quercus suber]5.8e-0730.25Show/hide
Query:  RFTWQNNQPGTTFIHKRLDKCIDHRVIEAALQESEDTHYARNNKSH--------------------FKFKEAWTLHEDCVSTIQTGWEKGGGDDSP-NNL
        ++TW N +PG     +RLD+ + +       Q S  TH   +   H                    FKF+E+W L EDC  TI   W+  GGD++  N  
Subjt:  RFTWQNNQPGTTFIHKRLDKCIDHRVIEAALQESEDTHYARNNKSH--------------------FKFKEAWTLHEDCVSTIQTGWEKGGGDDSP-NNL

Query:  LTRIRSVTEELKRWGRNKT
          +I    E+L  WG  KT
Subjt:  LTRIRSVTEELKRWGRNKT

XP_027156573.1 uncharacterized protein LOC113757588 [Coffea eugenioides]4.9e-0627.5Show/hide
Query:  GNRFTWQNNQPGTTFIHKRLDKCIDHRVIEAALQESEDTHYARNNKSH-----------------FKFKEAWTLHEDCVSTIQTGWEKGGGDDSPNNLLT
        G+R+TW NN+PG   I KRLD+ + +        +    H  R+   H                 F+F   WT+HED +  ++  W +  G      L +
Subjt:  GNRFTWQNNQPGTTFIHKRLDKCIDHRVIEAALQESEDTHYARNNKSH-----------------FKFKEAWTLHEDCVSTIQTGWEKGGGDDSPNNLLT

Query:  RIRSVTEELKRWGRNKTGKI
        ++R+V + L++W + K G I
Subjt:  RIRSVTEELKRWGRNKTGKI

XP_027158296.1 uncharacterized protein LOC113759916 [Coffea eugenioides]4.9e-0627.5Show/hide
Query:  GNRFTWQNNQPGTTFIHKRLDKCIDHRVIEAALQESEDTHYARNNKSH-----------------FKFKEAWTLHEDCVSTIQTGWEKGGGDDSPNNLLT
        G+R+TW NN+PG   I KRLD+ + +        +    H  R+   H                 F+F   WT+HED +  ++  W +  G      L +
Subjt:  GNRFTWQNNQPGTTFIHKRLDKCIDHRVIEAALQESEDTHYARNNKSH-----------------FKFKEAWTLHEDCVSTIQTGWEKGGGDDSPNNLLT

Query:  RIRSVTEELKRWGRNKTGKI
        ++R+V + L++W + K G I
Subjt:  RIRSVTEELKRWGRNKTGKI

TrEMBL top hitse value%identityAlignment
A0A2N9F1J5 DUF4283 domain-containing protein2.1e-0729.37Show/hide
Query:  MGNRFTWQNNQPGTTFIHKRLDKCI----------------------DHRVIEAALQESEDTHYARNNKSHFKFKEAWTLHEDCVSTIQTGWEKGGGDDS
        +G+ FTW N Q G   + +RLD+C+                      DHR +   L  S +  + R  +  F+F+E WT H+ C  TI   WE       
Subjt:  MGNRFTWQNNQPGTTFIHKRLDKCI----------------------DHRVIEAALQESEDTHYARNNKSHFKFKEAWTLHEDCVSTIQTGWEKGGGDDS

Query:  PNNLLTRIRSVTEELKRWGRNKTGKI
           ++ +I++  EELK+W  N+ G I
Subjt:  PNNLLTRIRSVTEELKRWGRNKTGKI

A0A2N9GHW6 Reverse transcriptase domain-containing protein2.5e-0830.71Show/hide
Query:  MGNRFTWQNNQPGTTFIHKRLDKCI----------------------DHRVIEAALQESEDTHYARNNKSHFKFKEAWTLHEDCVSTIQTGWEKGGGDDS
        +G  FTW N Q GT  + +RLD+C+                      DHR +   L  S +    R  +  F F+E WT H+ C  TI+  WE      S
Subjt:  MGNRFTWQNNQPGTTFIHKRLDKCI----------------------DHRVIEAALQESEDTHYARNNKSHFKFKEAWTLHEDCVSTIQTGWEKGGGDDS

Query:  PNNLLTRIRSVTEELKRWGRNKTGKIQ
           ++ +I++  EELK+W  N+ G I+
Subjt:  PNNLLTRIRSVTEELKRWGRNKTGKIQ

A0A2N9H6V4 RNase H domain-containing protein6.2e-0727.56Show/hide
Query:  MGNRFTWQNNQPGTTFIHKRLDKCI----------------------DHRVIEAALQESEDTHYARNNKSHFKFKEAWTLHEDCVSTIQTGWEKGGGDDS
        +G+ +TW N Q G   + +RLD+C+                      DHR +   L  S     +R ++  F+F+E WTLH+ C  TI+  WE      +
Subjt:  MGNRFTWQNNQPGTTFIHKRLDKCI----------------------DHRVIEAALQESEDTHYARNNKSHFKFKEAWTLHEDCVSTIQTGWEKGGGDDS

Query:  PNNLLTRIRSVTEELKRWGRNKTGKIQ
           ++ +I+   E LK+W   + G I+
Subjt:  PNNLLTRIRSVTEELKRWGRNKTGKIQ

A0A2N9ISP9 Uncharacterized protein1.3e-0729.92Show/hide
Query:  MGNRFTWQNNQPGTTFIHKRLDKCI----------------------DHRVIEAALQESEDTHYARNNKSHFKFKEAWTLHEDCVSTIQTGWEKGGGDDS
        +G+ +TW N Q GT  + +RLD C+                      DHR +   LQ S      R  +  F+F+E WT+H+ C  TI+  WE       
Subjt:  MGNRFTWQNNQPGTTFIHKRLDKCI----------------------DHRVIEAALQESEDTHYARNNKSHFKFKEAWTLHEDCVSTIQTGWEKGGGDDS

Query:  PNNLLTRIRSVTEELKRWGRNKTGKIQ
           ++ +I++  E LK+W  N+ G IQ
Subjt:  PNNLLTRIRSVTEELKRWGRNKTGKIQ

A0A484L3D5 Reverse transcriptase domain-containing protein8.1e-0728.8Show/hide
Query:  MGNRFTWQN-NQPGTTFIHKRLDKCIDHRVIEAALQESEDTHYARNNKSH-----------------FKFKEAWTLHEDCVSTIQTGWEKGGGDDSPNNL
        +G+ FTW +    G T+  +RLD+ + H  + A  Q+ E  H A+ N  H                 F+F   WTLHE+ + T++  WE          L
Subjt:  MGNRFTWQN-NQPGTTFIHKRLDKCIDHRVIEAALQESEDTHYARNNKSH-----------------FKFKEAWTLHEDCVSTIQTGWEKGGGDDSPNNL

Query:  LTRIRSVTEELKRWGRNKTGKIQNK
        L ++++V + LK+W ++  G I +K
Subjt:  LTRIRSVTEELKRWGRNKTGKIQNK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCAATCGATTCACATGGCAAAATAACCAACCTGGAACAACTTTTATTCATAAAAGGCTGGACAAATGTATCGATCATAGAGTCATAGAAGCTGCCTTACAAGAATC
AGAAGATACTCACTACGCAAGGAACAACAAATCCCATTTCAAATTCAAAGAAGCTTGGACCCTCCATGAGGATTGTGTATCAACAATCCAGACAGGGTGGGAAAAAGGTG
GAGGAGACGATTCACCGAATAATTTACTCACCCGCATCCGAAGCGTAACAGAAGAGCTAAAGCGGTGGGGAAGGAACAAAACAGGAAAAATTCAAAACAAGGATCATAGA
GGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGCAATCGATTCACATGGCAAAATAACCAACCTGGAACAACTTTTATTCATAAAAGGCTGGACAAATGTATCGATCATAGAGTCATAGAAGCTGCCTTACAAGAATC
AGAAGATACTCACTACGCAAGGAACAACAAATCCCATTTCAAATTCAAAGAAGCTTGGACCCTCCATGAGGATTGTGTATCAACAATCCAGACAGGGTGGGAAAAAGGTG
GAGGAGACGATTCACCGAATAATTTACTCACCCGCATCCGAAGCGTAACAGAAGAGCTAAAGCGGTGGGGAAGGAACAAAACAGGAAAAATTCAAAACAAGGATCATAGA
GGCTAA
Protein sequenceShow/hide protein sequence
MGNRFTWQNNQPGTTFIHKRLDKCIDHRVIEAALQESEDTHYARNNKSHFKFKEAWTLHEDCVSTIQTGWEKGGGDDSPNNLLTRIRSVTEELKRWGRNKTGKIQNKDHR
G