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Lag0005716 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0005716
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr6:27102163..27102657
RNA-Seq ExpressionLag0005716
SyntenyLag0005716
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034095.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.3e-1851.33Show/hide
Query:  KYNPLFELDSD------VVTVMMTETRTMEERMAEMQKHINTLMKTIEEKDSQIAQLKSQIENQHIAESSQTQVIKNHDKGKTIVQDDQPQCSTSIASLS
        +YN L E  ++      +++VM+T+  T E+RMAE++K +N LMK +EE+D +IA LK+ IE++  AESS T  +KN +KGK I+Q+ QPQ STSIASLS
Subjt:  KYNPLFELDSD------VVTVMMTETRTMEERMAEMQKHINTLMKTIEEKDSQIAQLKSQIENQHIAESSQTQVIKNHDKGKTIVQDDQPQCSTSIASLS

Query:  IQQLQDMITNCIR
        +QQLQ+MI N I+
Subjt:  IQQLQDMITNCIR
KAA0042128.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.7e-1852.21Show/hide
Query:  KYNPLFELDSD------VVTVMMTETRTMEERMAEMQKHINTLMKTIEEKDSQIAQLKSQIENQHIAESSQTQVIKNHDKGKTIVQDDQPQCSTSIASLS
        ++N L+E  ++      +++VM+T+  T E+RMAE++K +N LMK +EE+D  IA  K+ IE++  AESS TQ IKN +KGK I+Q+ QPQ STSIASLS
Subjt:  KYNPLFELDSD------VVTVMMTETRTMEERMAEMQKHINTLMKTIEEKDSQIAQLKSQIENQHIAESSQTQVIKNHDKGKTIVQDDQPQCSTSIASLS

Query:  IQQLQDMITNCIR
        IQQLQ+MI N I+
Subjt:  IQQLQDMITNCIR
KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]2.2e-1856.7Show/hide
Query:  DVVTVMMTETRTMEERMAEMQKHINTLMKTIEEKDSQIAQLKSQIENQHIAESSQTQVIKNHDKGKTIVQDDQPQCSTSIASLSIQQLQDMITNCIR
        ++++VM+T+  T E+RMAE++K +N LMK +EE+D +IA LK+ IE++  AESS T  IKN +KGK I+Q+ QPQ STSIASLS+QQLQ+MI N I+
Subjt:  DVVTVMMTETRTMEERMAEMQKHINTLMKTIEEKDSQIAQLKSQIENQHIAESSQTQVIKNHDKGKTIVQDDQPQCSTSIASLSIQQLQDMITNCIR
KAA0050518.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.7e-1957.73Show/hide
Query:  DVVTVMMTETRTMEERMAEMQKHINTLMKTIEEKDSQIAQLKSQIENQHIAESSQTQVIKNHDKGKTIVQDDQPQCSTSIASLSIQQLQDMITNCIR
        ++++VM+T+  T E+RMAE++K +N LMK +EEKD +IA LK+ IE++  AESS T  IKN +KGK I+Q+ QPQ STSIASLS+QQLQ+MI N I+
Subjt:  DVVTVMMTETRTMEERMAEMQKHINTLMKTIEEKDSQIAQLKSQIENQHIAESSQTQVIKNHDKGKTIVQDDQPQCSTSIASLSIQQLQDMITNCIR
TYK18071.1 uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa]1.7e-1852.21Show/hide
Query:  KYNPLFELDSD------VVTVMMTETRTMEERMAEMQKHINTLMKTIEEKDSQIAQLKSQIENQHIAESSQTQVIKNHDKGKTIVQDDQPQCSTSIASLS
        ++N L+E  ++      +++VM+T+  T E+RMAE++K +N LMK +EE+D  IA  K+ IE++  AESS TQ IKN +KGK I+Q+ QPQ STSIASLS
Subjt:  KYNPLFELDSD------VVTVMMTETRTMEERMAEMQKHINTLMKTIEEKDSQIAQLKSQIENQHIAESSQTQVIKNHDKGKTIVQDDQPQCSTSIASLS

Query:  IQQLQDMITNCIR
        IQQLQ+MI N I+
Subjt:  IQQLQDMITNCIR
TrEMBL top hitse value%identityAlignment
A0A5A7SY17 Ty3-gypsy retrotransposon protein6.1e-1951.33Show/hide
Query:  KYNPLFELDSD------VVTVMMTETRTMEERMAEMQKHINTLMKTIEEKDSQIAQLKSQIENQHIAESSQTQVIKNHDKGKTIVQDDQPQCSTSIASLS
        +YN L E  ++      +++VM+T+  T E+RMAE++K +N LMK +EE+D +IA LK+ IE++  AESS T  +KN +KGK I+Q+ QPQ STSIASLS
Subjt:  KYNPLFELDSD------VVTVMMTETRTMEERMAEMQKHINTLMKTIEEKDSQIAQLKSQIENQHIAESSQTQVIKNHDKGKTIVQDDQPQCSTSIASLS

Query:  IQQLQDMITNCIR
        +QQLQ+MI N I+
Subjt:  IQQLQDMITNCIR
A0A5A7TH26 Ty3-gypsy retrotransposon protein8.0e-1952.21Show/hide
Query:  KYNPLFELDSD------VVTVMMTETRTMEERMAEMQKHINTLMKTIEEKDSQIAQLKSQIENQHIAESSQTQVIKNHDKGKTIVQDDQPQCSTSIASLS
        ++N L+E  ++      +++VM+T+  T E+RMAE++K +N LMK +EE+D  IA  K+ IE++  AESS TQ IKN +KGK I+Q+ QPQ STSIASLS
Subjt:  KYNPLFELDSD------VVTVMMTETRTMEERMAEMQKHINTLMKTIEEKDSQIAQLKSQIENQHIAESSQTQVIKNHDKGKTIVQDDQPQCSTSIASLS

Query:  IQQLQDMITNCIR
        IQQLQ+MI N I+
Subjt:  IQQLQDMITNCIR
A0A5A7TZU9 Ribonuclease H1.0e-1856.7Show/hide
Query:  DVVTVMMTETRTMEERMAEMQKHINTLMKTIEEKDSQIAQLKSQIENQHIAESSQTQVIKNHDKGKTIVQDDQPQCSTSIASLSIQQLQDMITNCIR
        ++++VM+T+  T E+RMAE++K +N LMK +EE+D +IA LK+ IE++  AESS T  IKN +KGK I+Q+ QPQ STSIASLS+QQLQ+MI N I+
Subjt:  DVVTVMMTETRTMEERMAEMQKHINTLMKTIEEKDSQIAQLKSQIENQHIAESSQTQVIKNHDKGKTIVQDDQPQCSTSIASLSIQQLQDMITNCIR
A0A5A7U5H1 Ty3-gypsy retrotransposon protein4.7e-1957.73Show/hide
Query:  DVVTVMMTETRTMEERMAEMQKHINTLMKTIEEKDSQIAQLKSQIENQHIAESSQTQVIKNHDKGKTIVQDDQPQCSTSIASLSIQQLQDMITNCIR
        ++++VM+T+  T E+RMAE++K +N LMK +EEKD +IA LK+ IE++  AESS T  IKN +KGK I+Q+ QPQ STSIASLS+QQLQ+MI N I+
Subjt:  DVVTVMMTETRTMEERMAEMQKHINTLMKTIEEKDSQIAQLKSQIENQHIAESSQTQVIKNHDKGKTIVQDDQPQCSTSIASLSIQQLQDMITNCIR
A0A5D3D1E5 Ribonuclease H8.0e-1952.21Show/hide
Query:  KYNPLFELDSD------VVTVMMTETRTMEERMAEMQKHINTLMKTIEEKDSQIAQLKSQIENQHIAESSQTQVIKNHDKGKTIVQDDQPQCSTSIASLS
        ++N L+E  ++      +++VM+T+  T E+RMAE++K +N LMK +EE+D  IA  K+ IE++  AESS TQ IKN +KGK I+Q+ QPQ STSIASLS
Subjt:  KYNPLFELDSD------VVTVMMTETRTMEERMAEMQKHINTLMKTIEEKDSQIAQLKSQIENQHIAESSQTQVIKNHDKGKTIVQDDQPQCSTSIASLS

Query:  IQQLQDMITNCIR
        IQQLQ+MI N I+
Subjt:  IQQLQDMITNCIR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTTCAAGACTTCCTCAATGGCTGCAGTCATTAACAAGTCTTACATCGGTTCTAATGCCCATTGTTGCTTCAATGAACTGACGTTGCAAGAAGATACAACATCTAT
CGTTGCAGGCCAAGAAACAACCTTGCAGGGGGCATGTACTAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACTTGATTCTGACGTAGTGACTGTCATGATGA
CTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGAAACACATCAACACCTTAATGAAGACGATTGAAGAAAAAGATTCTCAAATCGCACAACTAAAGAGCCAA
ATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCATAAAAAATCATGACAAAGGAAAGACTATAGTGCAAGATGATCAGCCACAGTGTTCTACTTCGATCGC
TTCACTATCCATTCAACAGCTCCAAGATATGATCACAAACTGTATCAGAGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGTTCAAGACTTCCTCAATGGCTGCAGTCATTAACAAGTCTTACATCGGTTCTAATGCCCATTGTTGCTTCAATGAACTGACGTTGCAAGAAGATACAACATCTAT
CGTTGCAGGCCAAGAAACAACCTTGCAGGGGGCATGTACTAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACTTGATTCTGACGTAGTGACTGTCATGATGA
CTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGAAACACATCAACACCTTAATGAAGACGATTGAAGAAAAAGATTCTCAAATCGCACAACTAAAGAGCCAA
ATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCATAAAAAATCATGACAAAGGAAAGACTATAGTGCAAGATGATCAGCCACAGTGTTCTACTTCGATCGC
TTCACTATCCATTCAACAGCTCCAAGATATGATCACAAACTGTATCAGAGCTTAG
Protein sequenceShow/hide protein sequence
MSFKTSSMAAVINKSYIGSNAHCCFNELTLQEDTTSIVAGQETTLQGACTNDKFLVKYNPLFELDSDVVTVMMTETRTMEERMAEMQKHINTLMKTIEEKDSQIAQLKSQ
IENQHIAESSQTQVIKNHDKGKTIVQDDQPQCSTSIASLSIQQLQDMITNCIRA